AMCG00008660 (timeless)


Basic Information

Item Value
gene id AMCG00008660
gene name timeless
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 8192252 ~ 8207177 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008660
ATGGACTTATACATGATGAACTGTGAACTTTTGGCAACATGCAGTGCCTTAGGGTACCTGGAAGGAGAAACTTACCACCGCGAGCCAGACTGTCTGgAGAGTGTGAAGGATCTGATCCGCTACCTGCGCCATGAGGATGACACGCGGGACATCCGGCAGCAGTTGGTTCCCGATGACTCTGCCTTCAGACATCACTTCCTGCAGATTGTGTCCTACCTGCAGGCTTATAAGCAGGCCTTTGCCAACGAGAAGGTCTTTGGAGTCCTGAGTGAGAAACTGTACAACCTGCTGCAAATGGAGTgggagcagagagaggaggaggacaaCCTGCTGATCGAGAGGATCCTCCTGCTGGTGAGGAACGTGCTGCACATCCCCGCTGACCCCTACGAGGAGAAGACTGTAGACGATGATGCCAGTATCCACGACAAGCTGCTGTGGGCCATGCACATGAGTGGCATGGACGACCTGCTGAAGTTTCTGGCCAGCGCCCCCAGTGAGCAGCAGTGGAGTCTGCACGTGCTGGAGGTCATCTCCCTGATGTTCAGAGACCAGACCCCTGAGCAGCTGGTGAGTGCAGGCCAGTCTCGCTCAGTGCAGGAGAAGCAGAAGGATGCCCAGGAGCTGGAGGTGCTGCGGCAGAAAGAGATCGCAGAGAAGAGGAGTCGGGTGCTGCAGAGAGGAAGCAGGCACTCCCGATTTGGAGGCTCCTATGTTGTCCAAGGATTGAAGTCACTGGGGGACAAAGACGTCATCTATCACAAGGGGCTGCACAATTTCAAGAACTACAGCCACGACATGGGCAAGGCAGTGCGCAGGGTGCCCAAGCGGCGACAGCGGGCGAGGGACCCAGAGAACTGCCGGAGGTCGGCGCTGAACGTGCGGCTGTTCCTCAGGGAGTTCTGCATCGACTTCCTGGAGAACTGCTACAACCGCCTCATGTACCTGGTCAAGGACGGGCTGTTGCGGGAGAAAGCGCAGCAGCATGACGAGACGTACTACCTGTGGGCGTTGGCCTTCTTCATGGGCTTCAACCGCAGCCATAACTTCCGCATGGACCTGGTGTCCGAGACTATGTCCATCCGGACCTTCCACTACATCGAGCGCAACCTCACCAACTACTACGAGATGATGCTGACTGACCGCAAGGAGGCTACTTCTTGGGCACGCAGGATGCACCTGGCCCTGAAGGCATACCGGGAGCTGCTGATGACCGTGAATGAGATGGACCACTCACGAGATGACAATATCCGCCAGAGTGCATCTGTCATCAAAAGCAACATCTTCTACCTCATGGAGTACAGGGAGATCTTCCTGACGCTACTGCGGAAATTTGACGAGACCAAGCAGCCCCGCTCCTTCCTGAAGGACCTGGTGGAGGCTGCCCACCTGTTCCTGCGCATGCTGGAGCGCTTCTGCAAGGGCCGCAACAACCTGGTGGTGCAGAGGAAGAGGGTAAAGAAGAAGAGGTCCAAAGGCAAAAGGAGAAGTGGCCCTGCTGTGGACAGCTCACCTGAAGCCCTGGAGCAGTGCTGGCAGGTGGTGTCAGAGGAGCTCAAGGCCACAGGCTTCCAGTTGTCAGAGTCGGTGACAGAGGGCACTGTGCTGTTCGACGCTGCCTCCGAGGTGCCCCTGGAGGAGCAGCGGGCAGAGGCTATGGTGCGGATCCAAGATGCCCTACTGGCTAAACAGGGGCCAGAGGCGTTGGCGCTGATCAGGGCTGCCAGGGAGGTGTGGCCAGAAGGGGATGTCTTTGGAGCAGCTGATGTAGTAGCTGAGGAAGAGCTTGAGCTCCTGAAACAGATCCTATTTGCCAACCTGCCCAGACCAGCCACCACTGAGcctgtggaggaggaggaggaggtgggagagggggaggaagaggaggagattGAATCTGTGCGTGTTTCTGAGGCAGAATTCAACTTCCTGGACTACATTAAGAGGTTCGCCAGCCCCAATATCTTGCAGCCCtacctgctgctgctgaagaGTTACAATCAGAACAGCACCCACACCAACCATTGCATCGTCCGTATGCTGCACCGCGTGGCCGTCGACCTCAAGATGGATGCCCTGCTCTTCCAACTCTCTGTCTTCTGCCTCTTCAACAAGATCCTGTGCGACCCTGCTGCCACAGCATACAAGGAGCTGGTGACCTTCGCTAAGTTCGTGCTGAACCGCTTCTTCGCCCTCGCAGCGAGGAACAACAAGGCCTACGTGGAGCTACTGTTCTGGAAGAACGTGGGTGCCGTGCGGGAAATGACTGAGGGCTACAGCAAAGAGGAGGACAAGTGA

Function

symbol description
timeless Predicted to enable DNA binding activity. Predicted to be involved in DNA metabolic process and DNA replication checkpoint signaling. Predicted to act upstream of or within rhythmic process. Predicted to be located in nucleus. Predicted to be part of replication fork protection complex. Orthologous to human TIMELESS (timeless circadian regulator).

NR:

description
PREDICTED: protein timeless homolog, partial

GO: NA

KEGG:

id description
K03155 TIMELESS; timeless

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008660 True 2298 mRNA 0.57 18 8192252 8207177

Neighbor

gene id symbol gene type direction distance location
AMCG00008658 LOC103376555,LOC104932002 coding downstream 46018 8140051 ~ 8146234 (-)
AMCG00008654 NA coding downstream 117228 8037032 ~ 8075024 (-)
AMCG00008655 NA coding downstream 330716 7819151 ~ 7861536 (-)
AMCG00008650 tmbim6 coding downstream 445948 7728099 ~ 7746304 (-)
AMCG00008646 NA coding downstream 649365 7527549 ~ 7542887 (-)
AMCG00008659 NA coding upstream 24502 8231679 ~ 8244280 (-)
AMCG00008661 si:ch211-114n24.6,LOC108275942,LOC107659949,LOC106456382,LOC108433351,LOC103467923 coding upstream 44677 8251854 ~ 8273688 (-)
AMCG00008669 LOC106456382,LOC108433351,LOC103385219,LOC103467923,LOC101079871 coding upstream 109450 8316627 ~ 8320297 (-)
AMCG00008667 NA coding upstream 122722 8329899 ~ 8332822 (-)
AMCG00008666 NA coding upstream 125664 8332841 ~ 8356553 (-)
G50657 NA non-coding downstream 54191 8137475 ~ 8138061 (-)
G50647 NA non-coding downstream 86650 8105372 ~ 8105602 (-)
G50632 NA non-coding downstream 87449 8005638 ~ 8104803 (-)
G50646 NA non-coding downstream 92807 8098772 ~ 8099445 (-)
G50615 NA non-coding downstream 207301 7984740 ~ 7984951 (-)
G50711 NA non-coding upstream 71575 8278752 ~ 8324775 (-)
G50736 cdk2,LOC107683630,LOC107570445,LOC107737371,LOC107696023 non-coding upstream 150273 8357450 ~ 8360962 (-)
G50740 NA non-coding upstream 165329 8372506 ~ 8384007 (-)
G50784 NA non-coding upstream 366837 8574014 ~ 8574338 (-)
G50836 NA non-coding upstream 630182 8837359 ~ 8840655 (-)
AMCG00008662 NA other downstream 2075 8182929 ~ 8190177 (-)
G50656 NA other downstream 56838 8134581 ~ 8135414 (-)
G50602 NA other downstream 289646 7901335 ~ 7902606 (-)
G50476 NA other downstream 1040780 6947889 ~ 7151472 (-)
AMCG00008634 NA other downstream 1259163 6920707 ~ 6933089 (-)
G50710 NA other upstream 61846 8269023 ~ 8269326 (-)
G50712 tuba1c,LOC108255233,LOC108433351,LOC103467923,LOC106456382,LOC102313992,LOC107707018,LOC107557552,LOC105930792,LOC107697948,LOC102193505 other upstream 63147 8270324 ~ 8294354 (-)
AMCG00008668 LOC106456382,LOC108433351,LOC107714908,LOC103467923,LOC108433416,LOC103367934,LOC102193505,LOC108255233 other upstream 74038 8281215 ~ 8293486 (-)
G50739 NA other upstream 160739 8367916 ~ 8371330 (-)
G50788 NA other upstream 449551 8656728 ~ 8660017 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location