AMCG00008666


Basic Information

Item Value
gene id AMCG00008666
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 8332841 ~ 8356553 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008666
ATGATAGGGCCAAGAGGCTCCCGCGGGTTCTCTCGTTACCGCTCATGGAATACCAGGATGTACCCCATGTGGAAAGAGGGCGACCGCCGCAACAGAGACTGCTGGAGAGGGGGCGAAGTGACCTTTGACATCAGTAACGATGCCCCCACTCTCATCGGTGCCAAGGCCACCTTCACCATCGAGCTGCGCTTCCCGCACAACCAGACCGTGCTGCCCAACGGCCAGGTGGTGTGGTCCGAAAACTGTACCATTAACGggaCCCACTATCGGAGAGGGGAACAAGTTTACCCCGGGCGCAACTCCTCAGAAGAATGGTCTGGGGTCTTTCCAGATGGGACCCCTTTCACCAGAACCTCAGACAAGAAGCCCAGCTATGTGTTTGTTTGGAAGACATGGGGACGGTACTGGCAGGTAGCAGACggcccctcttcctccctcacCATCGGCACTGACAATGTACCCCTTGGCTCGTACAACATGGAGGTGGTCATCTACCACTGCAGGGGCAAGGAAAAGAGAAAGAAAGATTTGGATCAGATTCCCTTTGCCGTGGACCTGTCACAAGTCAATGACCTTAACGTGGCTGACCAGAACTTCATCCAAAACCGGGCCATCGCCTTCTCCATCCATCTGCATGATCCCAGCCAGTACCTGAGCGACTCTGATATCACCTTCAACTGGGACTTTGGGGACAATAGTGGCACCCTGATCTCTCGTGACCTCACAGTGACCCACACCTACCTCTCCCCTGGCACTTTCCGCCCACAGGTGGTCCTGCAGGCAGCCATCCCCAACGCAGGTTGCACCACCTCCGGAGACATCCCCACCGCTGCCAACCCCACCGCTGGACTGCTCACCTCCCAGCCCCCACAACAGGGCACCACTGCCTCAGGTGATCCTTCTGCTGCCCCGGTGGCAGTGTCCACCCCTGCTGCTGCCCCCACGGTTAACCCCTCTGCTCCTACCCTGCCTCAAGACGCAGCCAGCATCGACCTGGCAGTACCCGTGGACAACACCGTGGTACctgcagagggagagacggaCCCGGCTGCAGCAGTCGAAGGGGAAGCCGCAGCTGTTCCGGCTGTGTCTGCTGTTCCCACTGCCGAGGCTGCAGAGGACATTGCTGTAGATGAGACGGCTGCAGAGGAACCCATTGTGCCCGCTGTCTCTGCTGCTCCAGCTGAAGAAATCGAAGGGGACGCCGTGGTGGCTGCCTCTGCTGCCCCAGCAGACATCGTTGTCTCGGAGGCAGCCGTTGATGAGACAGCCATCCCCGTTGATGAGACAGCCGTCCCTGTTGATGAGACAGCCGTCCCCTTTGATGAGACAGCCGTCCCTGTTGAGGAGGTTGAAAATGAGGCCATCCCAGCAGACACCGCAGCCCCAGTCAACCCCATCACACTGGCTGCCTCCGTCCTCCCAGCTGAGACAgacctctctgtgtctcttgtgGCAACAGCTCAGGCCGAGGAGGCTACTTTTAATTTACCTTTCACCCTTCACGTCTGCGATGACTTCTCAGAACCTGCAGCAAAGAAAGAACAAGGAATAACACAAAACCGCTAA

Function

GO:

id name namespace
GO:0048069 eye pigmentation biological_process
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K17304 PMEL, SILV; melanocyte protein PMEL

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008666 True 1569 mRNA 0.58 10 8332841 8356553

Neighbor

gene id symbol gene type direction distance location
AMCG00008667 NA coding downstream 19 8329899 ~ 8332822 (-)
AMCG00008669 LOC106456382,LOC108433351,LOC103385219,LOC103467923,LOC101079871 coding downstream 12544 8316627 ~ 8320297 (-)
AMCG00008661 si:ch211-114n24.6,LOC108275942,LOC107659949,LOC106456382,LOC108433351,LOC103467923 coding downstream 59153 8251854 ~ 8273688 (-)
AMCG00008659 NA coding downstream 88561 8231679 ~ 8244280 (-)
AMCG00008660 timeless coding downstream 125664 8192252 ~ 8207177 (-)
AMCG00008673 NA coding upstream 99964 8456517 ~ 8457954 (-)
AMCG00008672 NA coding upstream 146147 8502700 ~ 8504696 (-)
AMCG00008674 NA coding upstream 194016 8550569 ~ 8565844 (-)
AMCG00008681 NA coding upstream 279247 8635800 ~ 8658560 (-)
AMCG00008682 NA coding upstream 345225 8701778 ~ 8717326 (-)
G50711 NA non-coding downstream 8066 8278752 ~ 8324775 (-)
G50657 NA non-coding downstream 194780 8137475 ~ 8138061 (-)
G50647 NA non-coding downstream 227239 8105372 ~ 8105602 (-)
G50632 NA non-coding downstream 228038 8005638 ~ 8104803 (-)
G50736 cdk2,LOC107683630,LOC107570445,LOC107737371,LOC107696023 non-coding upstream 897 8357450 ~ 8360962 (-)
G50740 NA non-coding upstream 15953 8372506 ~ 8384007 (-)
G50784 NA non-coding upstream 217461 8574014 ~ 8574338 (-)
G50836 NA non-coding upstream 480806 8837359 ~ 8840655 (-)
G50915 NA non-coding upstream 787791 9144344 ~ 9149938 (-)
G50712 tuba1c,LOC108255233,LOC108433351,LOC103467923,LOC106456382,LOC102313992,LOC107707018,LOC107557552,LOC105930792,LOC107697948,LOC102193505 other downstream 38487 8270324 ~ 8294354 (-)
AMCG00008668 LOC106456382,LOC108433351,LOC107714908,LOC103467923,LOC108433416,LOC103367934,LOC102193505,LOC108255233 other downstream 39355 8281215 ~ 8293486 (-)
G50710 NA other downstream 63515 8269023 ~ 8269326 (-)
AMCG00008662 NA other downstream 142664 8182929 ~ 8190177 (-)
G50656 NA other downstream 197427 8134581 ~ 8135414 (-)
G50739 NA other upstream 11363 8367916 ~ 8371330 (-)
G50788 NA other upstream 300175 8656728 ~ 8660017 (-)
G51008 NA other upstream 1034290 9390843 ~ 9393227 (-)
AMCG00008741 hdac7,LOC107704627,LOC107752451 other upstream 1981772 10338325 ~ 10370316 (-)
AMCG00008744 NA other upstream 2204313 10560866 ~ 10603373 (-)

Expression


Co-expression Network