G50915


Basic Information

Item Value
gene id G50915
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 9144344 ~ 9149938 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU63686
GTCAGACCCACATACAGCCACACACAGCGTCAGCACCGCCCCTACTGGAGACCTGATCTTTCCTAGTCCATTGACAACTTCTGCTTGCGAGTGAAACTAAATGTCTCACCAGGCCCGGTACCGTTACTGATCTTCCAGTCTCGTCTCCCGTATCGGCACATCCTGCTTGTTAATTTATTGTCTCCCGTTGCCTTCGGCCGCATCAATGCAGGGCGGGCTGGACCAAAGACTTGGAGGAGACGGTCTTTCACAGCCAGGTCCGCAGGTGTTGGCTTTTCTTCCGATCAGGAGGACGAAAGCACAAAAAAGGGCTGTTTTTAATGCATGCCTTTCTGCCCCACTTCAttacccccaaaaaaacaacttaaatgaCTGCCACTTAATCCAGAATTACATCCCAACCAAGTACTGCGAAGCACTTTAGATGGCTCAGCGCACCTATCAAAAGGCAACTGCTGAAATGTACTGCCAATCTCACTGTGCCATACAGTGCCAGTAGCAAATTCACACCCTGTGGTGATCTCCCAAAATGgattcaaatacaatacaatgcactataaaaaaacaacaacaaaaaccccAATACAGGGAAGATCACTTTCGTAATTCTGTATCGAAATTTGAACATTTGGTCATGTGATCAAGGTCTTCCCTTCACCTCTCGCAAGCAAAGCAACTGTCTAGGAAAATATCTGGTTTCTCCAGGACTCGGCCTCAAAAGTACCTTCTAGTTCTGCAAAACCATCGTTCTCCTGTATCTCATAGTAGGTGGCCAGTTAGCTAGTTAGAGGCCGATGTTAAACTGTCAGGCGGGAAAGGATCATTTACACCTGGTCAGAAACTTCTGCACACATCATTGTACATCTGGACTCTTCCAGAGAGCACAGCTGGTCCACAGAAACGGCTGGCTGTGGTGCCCTTCTCCTGGAAATAAGTGTTCCTGCTACCTCCCAGGTACTACACAGACAATAGCATTACAATGTAGAGCAACACGGTGGGCAGCTTTTGATGGCCCCTTATTGGGTGAGCTATGGAGAACAGTAGCTCAGAGAGCATTAGTAGTGGCTGGTAGTTATGGGTTTGACTGTACACCAAagggagggtggggtggggttagGAGtgtgcagaaaaacacacaaaagcttCCCAGTTCTCTAGACTGCAAGAACAATACTGATCACAGTGAAAGCACGGGTTCTGTACGGGTTTTatgtagtgtggtgtagtgaCTGgggtagttttttgtttttgtgatattttttaattttaaaattcatatttcatatgagtttttatttgtattatcttaCTCGGAGCACTCCAGTTCTAAAGGGACATCCATTAGAcacctgaaaaataataatagtgaaccAATTTGCCCATTTTGTGCACCTACTGAATTCGAGCAACAGACCATAGCCAGCCAGTCCGAAGAGATTGACTGACTGTACAGACTGTTCACTTTCCACTGCAAGCTATAAGGtttgagacacacacacacacacacacacattgcccGACCCCCCCCCCTTCGAGCTTTCTACATTACACCAATTTCAAATGCCTTAAAACAGAAGTGGATTGAGCCGTAGTAAGagtattcaatttatttttttttctgcacactCCTTAACAGAATGAGGGTTGGGGTTTGGTGGAGAAGAAAGGGGTGCTTACTGTTCTTTACTGAAGAAGTTTTCAGTCAAGTGCGTCGCAGATATATAcgtaaatttaaaaaatgatgggATAACCTAAATCGCAGTGTCCCCCTTCCTCCACTTTTCGCGGCGTGCCAAAATCTCAAATCCTCTGTAAGCGATCACCCCATTCTTCcattccccccctccctctttctttttttttttttttgattgatgATCGTTAACTTTTTAAAAGAGAACAATGCtagtaattttgtttattttaaatgtgcaacaTGAACTTGAAATACTAAATCCAATTAAAACCACACAGACGCAGGCGTGCGCGCGCACACACAATGCAGGACCCTGACATTTCCAGAATTTAATAGACATTTGCAAAGCCCGGCAAAGAAATgtccttttaatatatttatattctatatatatttatgctgTTCTTATTTTCATTCTCCAATTTGTGGTTTCTTTTGGGCCACTTGTATTGAACATGAATGGTTATTAAAGGtctatttaaaagaaatgggGACAAAACAAATTAGAATGTGACTTAGACTCCATTAGACCATGGTTATGTGAAGTTATGGACAGAATTTGCACAAAGAAATATTGGGAATACAGGTTTTTCATGTCTGAAAGAAGAATCAGACATTTTCCTGCAGCTACTAAAGACATTTGATGCCTTTATTCAGATTCTATAATCACTTGAGCTGATGCCATtatggtttagttttttctttatatttagtttttctgcaaCTTATTCCACAATTGTCGAGAGCAATAGACAGAGCTAGCCTTCGAATTCTTAAGTGTTACTTTTTCTGTTAcggtaccttttttttttttttttttcttcaaaattaatttgcactttgttttaatttttaatttttttaggaCAGGGCGGGTGTCAGTTGTAGTCGaataatttaaatcttaaaagtATTGTCTGACGTGtagtaaatgtttattaaactgGAATATGctgtttactgtttttaaaatgaccaaaggttatttgttattattactgctattattatgattgactgctattttattttatttaattagtagtaGCCTACTTTACTTTAATCTGAACTTGTTTTAGAAATACCAGACAGCCATACTGGACGTTTATTATGATCATTGGCCTTAGTTAAATTATCAAGTGGTACAAATACAGCGCAAATTAAAATTGAGTCTGGGGTACTTACAGTACTTTTGTATATCTTCCGTTTCACTTTATAGTgataaaacactttttcttaTCCGTACCTCTGAATATAGTTTGCATTGGGCACGTGTCTGTAGAATCAAGAGAAACCACCGATTTCAAAACGGATGTACGTTTCCTATGTCTGTTTTAAGGATGGTACTTGAGACCGACTGtttgcagaaaagaaaatggtcaTTGTAAAGCTTAGAAAATTGTACACTTAACAGTTTTTCATTACTTAGGATACAACACACAATAGTAAAGGTGCTGTGTTGAGAGAATCATGGTCCAGTCACTTCctctactgtatttttattattattttgcttaataTCATGATAGGACAGGGAAGAAATCTTGTATGTCTTTCCTCATGGCCGAGAGGTGGTGTTTGTGGTTATGCACTGCGTTTATGTCCAACTGGACCATGGTCTGACTGCGGACTGAACTGATTTCGCTGGGATTGTGTGCTTGATtggggtgtgtttgtgtttaatattatgtttcagTGTTAGGgtatcagtgtttttttttttttttttcttctttgtgtgtgtgttttaatgcgATGCTATTGAAGTGCGGGTTCTTCTTGAAGACATGGTTTTGTAATTGGAAATTCCGGCAAGCTTTCCTATAGTGTGACTCGCAGCCTATGCAATCTAGCAACTGTCGATCTGGAGCACAGGGTCCAccaagcagttttttttttttttttttttttttgctatgtCGGATTCCCATCCAGCCATTttgttacattcaaataaaaaaattccaAACCTTTGTGACCTCACACGGCTGAACAGCAGTGTGGCGTAAGCTACAACACTCCATTaaagttctttttttatttctttgaaatGTCTCGTCTTGTTCTGCCTCCCTAAGCGAGGTCAGTATACGTCAGTCAATCGTACGACAAACACGGATGTTTACAATGCGAACTCAGGATCATGTGTATTTCAACTTCCTCCATTTCCTTCCCCCTTTTTCTGCCGAATAGCAAGGATTTTGAAGCGATACAAAttgaaagaatatatatatatatattattttttttgcttacaGTATTTGCTTACAGACTTCTATGTGTTTCGTTCGTATACGACGTCTTGACTCGACCTCTTGGTTAAGCTGGAGTTCTCTATATGTATCCTTATCTATTCTCTTGATCGCCTTATTTTAGCCTTACTTCTCTAATGGAGAGcaaactcacacacagaaaaatatttttgtatatgtggCGTGCCTAGAACAAGGGGTTTCATTACCCATTGCAAATAGTTTCTCAACGCTCCGGATCATTATAAAACCCACAACACACTCGAGTCCAAGGCAGCTTGGACGATTTCATGATTTCAATGAACCTACACTTTTTTTCCTACATATGtttaagctttaaaaaatgaaaacggcGACCTTACTTTATGCAACTGTAGCTAAGCTGTCTACTTAAAAGTTGCTAAACCGCGTCGCTGTAGAGCAATATAAAAAGTGCCGATCAGCGGGCAACCCAAAGTTTCCACAAGATCTTCTTTATTGTTCTCCCCTTTCCTGACTCTTCCTAAATAATGGACTCTTCTGTTTAATCGTCTGCGTGTCTTTAACCTTTGGACTAGTCTTCCAGTCTCCTCTTTGGTTTTGATTGACACCTCTCTTAACAGTCGTGGTAGTACTGCGGCCTAAGACCCTGCCTGGCTGAAAATAATTGCCCTGTGTTTAGAAAGCTCCAAGGAACAATAGTCAGACAGCTTTGCTTTACCTCACTGAAATCCGTGCAAAAAGCTACAAACCAATCTCTTCCTTTTGAAGCTCAATACCAAGAGATTGCCCGAATGAAAACCCATCTCTTGATGTAGGTTGCTCGCCAAACTTGAAAATTGATCGTAGGTGGCAACAAATATCCgaacattaaaacagaaaaaataaaattcatagAGAGATGTATTTGACATGTTTTTGGTGCTatgaaatttgttttattaactatATTGCTATGGCACCTCACATTAAgtagtttttatatttaaattaattgtaagcTTGACTTGGACATCTCTCcagaggagaaaataaagaactgAAAATTGACATGGTGAAggattttatttggtttttacttgaaatatttaatttgtcatctTTTTACTGTCTGTGCTTGTCTGAGTGGGTGAGTGTGTCTTGCTTGTTTGTGAAGGCCAGTATCAGCTAACGGGGAATTGCAAAACGGCAGTCTAAAATAGTCCAGGAGTTTATCAAAGGActatcttttttaattttattttattttggtccGTTGTATATTTTAGGAATGATCTATATCTGTACAGAATTTCCCTGACTCTAGAACGGGTACATTGTAATTACAAATTAAGTATTAAGGGAGTGTTTGCAGACAATGTGAAACTCCCAAAACTTTCTTAGTGGTTGTAAATCAGTGGCACTTACTGAAGTAAATCTGGTCAATACAGACTTGTTAACATGCCGCTATAACTCAGCAATACACCTGCAAAGGATGCTTGATTTATTACTACTGGATTTTTCTTTGCCTTCCTGTTTCAGGATTgcattttaatctgaaaatgtgtggtggtttgttttgtttttataatactaCAAATGTTCATGTATCTGAAGGTCACACTAATAACTAAAAGTAGGCTACTGTTGGTTTTGATGAAAACCAAACCAGGATCCCTGTCTCGTCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU63686 True 5595 lncRNA 0.39 1 9144344 9149938

Neighbor

gene id symbol gene type direction distance location
AMCG00008697 rnf41,LOC107723732 coding downstream 41464 9081827 ~ 9102880 (-)
AMCG00008699 NA coding downstream 76914 9036933 ~ 9067430 (-)
AMCG00008694 NA coding downstream 108401 9019960 ~ 9035943 (-)
AMCG00008692 NA coding downstream 176460 8958278 ~ 8967884 (-)
AMCG00008690 NA coding downstream 202521 8941500 ~ 8941823 (-)
AMCG00008698 LOC105017093,LOC106583345,LOC106565408 coding upstream 122 9150060 ~ 9170282 (-)
AMCG00008705 cs,LOC107707042,LOC107715034,LOC107671863 coding upstream 47495 9197433 ~ 9205392 (-)
AMCG00008702 NA coding upstream 73176 9223114 ~ 9229459 (-)
AMCG00008704 NA coding upstream 82188 9232126 ~ 9255654 (-)
AMCG00008703 NA coding upstream 133612 9283550 ~ 9287687 (-)
G50836 NA non-coding downstream 303689 8837359 ~ 8840655 (-)
G50784 NA non-coding downstream 570006 8574014 ~ 8574338 (-)
G50740 NA non-coding downstream 760337 8372506 ~ 8384007 (-)
G50736 cdk2,LOC107683630,LOC107570445,LOC107737371,LOC107696023 non-coding downstream 783382 8357450 ~ 8360962 (-)
G50711 NA non-coding downstream 819569 8278752 ~ 8324775 (-)
G50999 NA non-coding upstream 226634 9376572 ~ 9379452 (-)
G51002 NA non-coding upstream 230813 9380751 ~ 9381754 (-)
G51004 NA non-coding upstream 238320 9388258 ~ 9388608 (-)
G51005 NA non-coding upstream 238886 9388824 ~ 9389048 (-)
G51006 NA non-coding upstream 239273 9389211 ~ 9389570 (-)
G50788 NA other downstream 484327 8656728 ~ 8660017 (-)
G50739 NA other downstream 773014 8367916 ~ 8371330 (-)
G50712 tuba1c,LOC108255233,LOC108433351,LOC103467923,LOC106456382,LOC102313992,LOC107707018,LOC107557552,LOC105930792,LOC107697948,LOC102193505 other downstream 849990 8270324 ~ 8294354 (-)
AMCG00008668 LOC106456382,LOC108433351,LOC107714908,LOC103467923,LOC108433416,LOC103367934,LOC102193505,LOC108255233 other downstream 850858 8281215 ~ 8293486 (-)
G50710 NA other downstream 875018 8269023 ~ 8269326 (-)
G51008 NA other upstream 240905 9390843 ~ 9393227 (-)
AMCG00008741 hdac7,LOC107704627,LOC107752451 other upstream 1188387 10338325 ~ 10370316 (-)
AMCG00008744 NA other upstream 1410928 10560866 ~ 10603373 (-)
AMCG00008748 LOC107666380,LOC108429286,LOC107705699,LOC107681386,LOC107559866 other upstream 1521011 10670949 ~ 10718201 (-)
G51241 NA other upstream 1525818 10675756 ~ 10712485 (-)

Expression


Co-expression Network