AMCG00008692


Basic Information

Item Value
gene id AMCG00008692
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 8958278 ~ 8967884 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008692
AGACAGCTGAGAGACGCCGAGCGGCGGGGAGTGTGTCACAGAGGTACAGAGGTACAGTACGGACAGTTTACATACTGGGGTATCACTTGGAATACGGACCTATTGCTTGAATTGCCGACAAAAAGAGGAATATATAAAGCAGAGATGCCCTGTGTTCAAACCCAGTATGCAACTCTGTCCTACGAGAACTATAACCCCGAGTTCCTGAACACCGACTTTAGTGGCAAGTTGGCCATGGACCTGAGCAGCCAGCGGGACCAGCTGTCTGCCCCCTCACTGCCCAGCTTCAGCACCTTTGTGGATAGCTACACGGGCGAGTTCGACGCCTACCTGTGCCAGATTGCCGCAGCCTCCACCTCCCCCCCTGCCGGCGCTGGCCAGCCAATGGCCTTTAAACTGGATGACTTCCAGGTGTATGGCTGCTACCCTGGGAGCTTCCTGGACGAGACCCTGTCCTCCTGTGGCTCAGACTACTATGGCAGCCCCGCCtcggctccctccccctccactcCTGGCTTCCAAACCCAGCCTGTGTCGGCCTGGGAATCCCCTTTCAGCCCCTACTCTCCCTCCCCGGCCTGCTGGGGCACTGACAAAACCTCCCTCCCCCAGGCACCTTCCTTCTTCACCTTCAACCCCCCCACCGAGCAGCTCTCCCCCCTCGGTCAGCAGCAGCATCCAGCCCCGCTGCTGGAGCAGGACCCCTTCTCACAGCCCCAGCACTCCTCCCCCCTCTCCTTTACCCCCCTGGCCCTGGACCAGGCCTCGGTGGATGGCGCAATGCTGATGGAGGGGCCCCTGTCGTCGCCCAAGGCCCGCAGTCCCGGCTCCAGCGAGGGCCGCTGTGCGGTGTGCGGGGATAGCGCCTCCTGCCAGCACTATGGTGTGCGAACCTGTGAGGGCTGCAAGGGCTTCTTCAAGCGTACTGTACAGAAAAACGCAAAATATGTGTGCCTAGCCAACAAAGACTGCCCGGTGGACAAGCGGCGGAGGAATCGCTGCCAGTTCTGCCGTTTCCAGAAGTGCCTTGCTGTGGGGATGGTCAAAGAAGtGGTAAGAACTGACAGCCTCAAAGGTCGCAGGGGTCGGCTGCCATCCAAGCCAAAGAATGTCCAAGACCACCTGTCCACCGCCCCCCCCATCAACATCATTGCCTCCCTAGTCCGGGCGCACATCGACTCCAACCCCGCCATCGGCAAGCTGGACTACTCCAAGTACCAGGAGACGGTGGCCAGCCTGTCAGATAAGGAGGACGCCAGCGACATCCAGCAGTTCTACGACCTGCTGACTGGCTCCATGGACGTGATCCGCAAGTGGGCCGAGACCATCCCGGGCTTCACAGCCTTCTGTCCTGAGGaccaggagctgctgctggagtcGGCCTTCGTGGAGCTCTTCATACTCCGGCTCGCCTACAGGTCGAGCCCAGAGAAGGAGCAGCTGGTGTTCTGCAACGGGGTGGTGCTGCACCGCATGCAGTGTGTGCGTGGGTTCGGGGACTGGATCGACTCCATCATGGACTTCTCAAACAGCCTGCAGCGCATGAGCATCGACCTGTCCTCCTTCTCCTGCCTGGCTGCCCTCGTCATCATCACAGATCGCCACGGCCTGAAGGAGCCCAAGCGCGTGGAGGAGTTCCAGAACCGGCTGATCACCTGCCTTAAAGATCACGTGAGCAGCAGCGTGAGTGACCCTGGCCGGCCCAACTACCTGTCCAAGCTGCTGAGCAAGCTTCCCGAGCTGAGGACGCTGTGCACACAGGGGCTGCAGCGCATCTTCTACCTGAAGCTGGAGGACCTGGTCCCACCACCCCCCATTGTGGACAAAATCTTCATGGACACCTTGCCTTTCTGAGAGAGAAGGAATCCGCCATGCTTAATTGGAAAGCACTTACAGTTACAAAGGCAGGgccctgcctctctctgcccctctgcGGAATGCACATGCTTACCTGGCTCCGCCTGTTCGGAATGCACTGACTGATTGGCCGAATGAATGACAGGTACCTTGCCCCGCCTCCTTGGGAGAAACCACTTTTACAATGAAAAGAGGGGAGGCAGGACGTTTGTTTTGACCTCTCATTTGTCACCTGGGAATTATAgtgaaacattaatttcaattttttttgtctccTTGCTGTAAAACTACAGAAgtgacctttttttattttttctcttggaGGATTACTTGAGGAATCCTGTTTGACAGTGACAGGAGGAACATTTTTGAGCATCTGTCTAAGGGTCAGCCATTGCTGGGCTTGAAAATGGCTACACACACTGCCGGGAGATGGGGGGGTAGGGGACTTTACAATATTGTACGCACAGCCTGCTGTACTCTGTGTGAGCGGACCATTAATTCAGACATAAGCAGTATTAGAGCTGGTACTAGTACAAATGGTATGGGCCTCCCCTCCCCAAGAAATCTGTACCAATCCTCTCGCTGCATTGGTACAGCCTGAGCTGTCGCACAGGGGACGGGGCCATAAAGATTTGGTGACGGGGTTCAGCCTTAGTAGTGGCAGAGTGGGTCAGTCCTGTATTTTCAAAGCTAGCCTTGTGTTTGTAGCTCGCTGTGTTTCAGGCGTCTTGTCTTTCAACACTAGAGAGTGAGTGACAGGGGTCACAGGACCAGAGGGGGCCTTTGTGCTGTGCATGAAAGATCTGTGGGCTGTCAGAGTTTGGCCTGGGGGTGAAAATCCAGACCAGATACTCAGCCCAGACCCTGCGCCTGTTTCTCAGGGCTGTTCACCTGTAACCAGGCAAAACTCACCTGCTGGACGGACCTGTCTCTTAAAGCTTGCAAACTGCCACTTCCAAGCATGCTGAAACATTGTCACAGCTGCCATTCGTATTGGAGGAACACTGCTCTTACCTGCTTATCTCGTTGTGCGGCTGTTTACAGGAGCGGGAGCTGCCGAGCACACACCCTGACATAGGCCTTGGCCCAGCCtgtggatacagagtcagtacAGTGGTGGGGAACCCAAATTGCTGGAGGGCCACAGCGGTTTTGCAGTATTTCCAGGTGGTTGGCTGAACGAGGTGAAAAGAGACCTAAGAAAACCTGCAGCACTGATTTGTGCCCCCCAGCACCAGGGCTCCCCAGCACCTGTGCTTGTGAATCAGAGCCCTCCTCACTTTGAGAGATGCTCTCCAGGCTCTTTCCGCACACGCCGAGCACAAAGCAAaggcagaaatgtttttttttttttttttttaatcaaaatgttgtttctttttgtcttttatgttttgaaaagtCTTTGGGACTCAAATCCCAGCCTCCTAAAACGTGAAGCAGAACCTTCCACCCTTTGGCCACCAAAACGAGCAACgtcactgcttttttttttatgatatctTAACAGTGCCTTACTGAAATCCATTCAATACATTCTCACAGTCACAGCCAGTCTTTATATCTTGTGTTCGTTGTCAACTGTGCAGACCCCCCGATCTCACGCTGCCTGATTCCTCTGATCTTAGCCTGGTTCAAAACCCATTACTTAGTACTTAGCCACTGCTAACCCTAacttaatgatttttttttatacatacgAGAAGATAATGGGGAGGGGGCGGAGGTACTGTATATTTCAAGTGTTGCCTTAACAATATTCTCAGCAGGAAGAATATGTacaattttacttttcaaaGGACCTTCTCAGACATCTGAGGTTGCACGTGACAAAAATGTGACAGACAAAGAAAAACGATGAGCAGCTATGATCACTTAGTACAGCATTTTGTAACGGCTTGTACCTTTGTTAAGACTAATATaacttccttttttaatgtatgtttatcatataatatataaagtatttgtttgaatatatttgtgaaagttttttcagttttatggttgtgatatgtttttttttttttttttcatgagtatatatttaatattcaattaaaaagtttttaaaaga

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0004879 nuclear receptor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K04465 NR4A1, HMR; nuclear receptor subfamily 4 group A member 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008692 True 3937 mRNA 0.52 7 8958278 8967884

Neighbor

gene id symbol gene type direction distance location
AMCG00008690 NA coding downstream 16455 8941500 ~ 8941823 (-)
AMCG00008691 NA coding downstream 42182 8913938 ~ 8916096 (-)
AMCG00008693 NA coding downstream 56527 8896737 ~ 8901751 (-)
AMCG00008689 NA coding downstream 65755 8882494 ~ 8892523 (-)
AMCG00008687 NA coding downstream 138832 8805776 ~ 8819446 (-)
AMCG00008694 NA coding upstream 52076 9019960 ~ 9035943 (-)
AMCG00008699 NA coding upstream 69049 9036933 ~ 9067430 (-)
AMCG00008697 rnf41,LOC107723732 coding upstream 113943 9081827 ~ 9102880 (-)
AMCG00008698 LOC105017093,LOC106583345,LOC106565408 coding upstream 182176 9150060 ~ 9170282 (-)
AMCG00008705 cs,LOC107707042,LOC107715034,LOC107671863 coding upstream 229549 9197433 ~ 9205392 (-)
G50836 NA non-coding downstream 117623 8837359 ~ 8840655 (-)
G50784 NA non-coding downstream 383940 8574014 ~ 8574338 (-)
G50740 NA non-coding downstream 574271 8372506 ~ 8384007 (-)
G50736 cdk2,LOC107683630,LOC107570445,LOC107737371,LOC107696023 non-coding downstream 597316 8357450 ~ 8360962 (-)
G50711 NA non-coding downstream 633503 8278752 ~ 8324775 (-)
G50915 NA non-coding upstream 176460 9144344 ~ 9149938 (-)
G50999 NA non-coding upstream 408688 9376572 ~ 9379452 (-)
G51002 NA non-coding upstream 412867 9380751 ~ 9381754 (-)
G51004 NA non-coding upstream 420374 9388258 ~ 9388608 (-)
G51005 NA non-coding upstream 420940 9388824 ~ 9389048 (-)
G50788 NA other downstream 298261 8656728 ~ 8660017 (-)
G50739 NA other downstream 586948 8367916 ~ 8371330 (-)
G50712 tuba1c,LOC108255233,LOC108433351,LOC103467923,LOC106456382,LOC102313992,LOC107707018,LOC107557552,LOC105930792,LOC107697948,LOC102193505 other downstream 663924 8270324 ~ 8294354 (-)
AMCG00008668 LOC106456382,LOC108433351,LOC107714908,LOC103467923,LOC108433416,LOC103367934,LOC102193505,LOC108255233 other downstream 664792 8281215 ~ 8293486 (-)
G50710 NA other downstream 688952 8269023 ~ 8269326 (-)
G51008 NA other upstream 422959 9390843 ~ 9393227 (-)
AMCG00008741 hdac7,LOC107704627,LOC107752451 other upstream 1370441 10338325 ~ 10370316 (-)
AMCG00008744 NA other upstream 1592982 10560866 ~ 10603373 (-)
AMCG00008748 LOC107666380,LOC108429286,LOC107705699,LOC107681386,LOC107559866 other upstream 1703065 10670949 ~ 10718201 (-)
G51241 NA other upstream 1707872 10675756 ~ 10712485 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location