AMCG00008697 (rnf41,LOC107723732)


Basic Information

Item Value
gene id AMCG00008697
gene name rnf41,LOC107723732
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 9081827 ~ 9102880 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008697
CCCAGCTCTCCTTCATTGGGACGGCCAGCAACAGGGGAAATCCATGTGACTGAGGGGCATTACAGCGCAGAGGGAACATGCAATCTGCTTCTGTGTGAGGGTTGATGGTCCCCAGTGATGCGCCATGGGCTATGACGTCACCAGGTTCCAAGGGGAAGTGGACGAGGACCTCCTGTGTCCCATTTGCAGTGGAGTCCTAGAAGAGCCAGTGCAGGCCCCTCACTGTGAGCATGCCTTCTGCAACGCCTGCATCACGCAGTGGTTCTCGCAGCAGCAGATCTGCCCAGTGGACCGCACAGTGGTCACGCTGGCCCACCTGCGCCCCGTGCCCCGCATCATGCGCAACATGCTGTCCAAGCTGCAGATAACCTGTGACAACTCCGTGTTCGGCTGCAAGGCCGTCCTGCGCCTGGACCAGCTGCAATCGCATCTGAAGGACTGTGAGCACAACCCCAAGAGGCCCGTCATGTGTGAGGAGGGCTGTGGGCTGGAAATGCCCAAAGACGAGCTCCCGAATCACAACTGCATCAAGCACCTGCGCAGCGTGGTTCAGCAGCAGCAGACCAAGATCGCCGAGCTGGAGAAGACCACCGCCGAACACAAACACCAGCTGGCAGAACAGAAGCGTGATATCCAGCTGTTGAAAGCATACATGAGGGCCATCCGCAGCGCCAACCCCAACCTGCAGAACCTGGAGGAGACCATCGAGTACAACGAGATCCTCGAGTGGGTGAACTCCCTTCAGCCAGCAAGGGTGACCCGCTGGGGAGGCATGATCTCGACACCGGACGCCGTGCTGCAGGCTGTCATCAAGCGCTCCCTCATCGACAGCGGCTGCCCCCTGTCCATCGTCAACGACCTCATCGAGAATGCCCACGAGCgcaactggccccaggggctGGCCACCCTGGAGACGCGGCAGATGAACCGGCGCTACTACGAGAACTACGTGGCCAAGCGCATCCCGGGCAAGCAGGCCGTGGTGGTGATGGCCTGCGAGAACCAACACATGGGCGAGGACATGATCCTGGAGCCCGGCCTGGTCATGATCTTCGCACATGGAGTGGAGGAGATCCTATAATGGGtggagggggtgtgtgtgtgtgtgtgtgtgtgctggggtgtgtgtgtgtggggagtcACCTTAAAGAGCGATAAAGGACgaagaaaataacacacacacacccctggaCAGTCAGAACGTCATCACGCATAACCCATCCTCATGCCCCCCTCGCCTTCTCCACTTCCCTTGCAGAGCTGTGAAAGACAAGGAGGCTGGGGGTGGCACGACAAAACTCTCAAATTCTTGGACCGTTTTGAAAACCGTGTGGACAggagcaattaaaaaaatataaaagcaaagtGGACAATTCTCAACACCcaattttagtaaaaaaaaaaaaaaaaaaacggaaaaaatgaaccaaaaaaaaaagtaatgtatgaAAATTATagagaaaatcaaacaaacaataaaacactaaatgTAACCGGCCTTCTCTCTCCGCAGCTGCAGCCAAGTGTGCCCACAATAAGCCTTTACTTCtttcaaataacaataatttattaagtataaaaaaatcaatttctaCGCTACCGAAAAGATTCCCGTTACTTGGATGTCTTCAGAAGCTCCGTGTGTATATTGCCATCAAATGATATCATATCATGCAGTagagttttgttttacagagaaCTCACCTTTCCCTGTCACGCTAGTCCCCTGTACTCAGAAGGACTCTTCCCCTCCTGTTGGggtaattattttgttctttttcacagAACAAGGCCTTTTAATTGCAAATGTAGGAGTTTGGCATTTTGCTGGATGGCTCTGTGTTTGTGGGGATTGAAGGATCAGAATCGTTCAATCACGAGGAACCCACCTTCCTCTGATCAGATCCGCTTCACTGTGTGCAGCGTGAAACGATTAAGCATTAAAATCTGGAAGTGTGAAAGTGGCCGAATGATAAAGCTGCTTCCTTTTTTCCAGCGTGGTTTCGACAAGGCCTGCATTCCTCCTGTGTGAGCTGACTGGAGTGCACCCCCATTCCTTTCgcacacattttttattcagGTCAATATGCTTCTAGCAAACCAAAATGAGCAAGGTTTTGTTAGCAGCCTGTTCTGACATTAACTTACCGGTGGCATCAACCAAATGTCACATCGAGCCTAACTGAAGATTGTTTTGAACTCCACTCCAATGGCCAACGCCTACTTTGGAACATATGGAGTCTGTAACGTCAAATCTCACCACAATCGTAGTAGTCCTATTTTCGAAGGAATGTGTATGTCTCGGTGGAGAACTGTGATAAGTAGGGAGTGTGTATTTCTGCAGAAAGTTTATTAACTCTTGAGGTCTCGGCAACATTTCCAAACTTCATCTGCAATCTTACCGTAGCTCCTAGAAGTATCTGAGTTGTCATTCTGTACTGTTCAGCTTTTCCATTCTACTCTTGATAACTTGTTCAGCCCATCTGCTGTATATAACTGAGCCTCTGTGTCCATGTCAATGTCCATGTACAGAACCACCCTCCTAAAACATGTGCACTGCCTTAAACTGAGTTCCCTCCTTTAATCTTACTGGGATTCCTCAGCAGCCATCGACAAAGTGTGCAGCGAAACTGCTTCCCCTCCAATGACACAATCCAGTGTCCGCCCATAACTCGTGCACTGTGGTTCCCAATGGAATCAGTGTTAAATACCCTGGCTTTCTAAACGGGCATGAACTGAAGCCACTAATGACTGGTTGAGTTGGCTAACTTTATGATCGGTAGCTTCAGTACCTCATGAAAAGCTATCGCCTTGTCTTATTGCTTTATTTACTCTTGCTTAAGGGAACAAAAGAGGCACCAGCTATATAATCTGGATCATTGTGTCTCCTGAAAAATGCCATCTTATAAATTCATGCATAGGACAATGATTTAGTTTTAGGTGgggttttgtgtgttgttttttattccaacACCATAAGATATTGGCATTAAGAGTCTGAATGTTAAACCTGGGGAAGCAGGGAATAAAATGAAGTCTAGAACCTGCTGTGAATTGTAGATTTTGCTAAGTCCATGTGCACAGAATCACAGTGTGTTACCATTTTTAGCACGCGGTATTAAACGCATGTCTGCACTGGTTATTTATATAGTGTAGTCGCTGTCCTAAATGCCTCCATTATGGACTGACTGAACAAAGATTCACGGAGCATTCTGGAGCTTCTCCACCCCCAGATGTGGAGTTTTTTCCCTAGTTAGTACTGGAAGGCCACAAAGTCTTTTGTAGatgatagaaaataataatcaaccTGCTTAAAACCTGGAAAAGACATTCAAATTAGCAAGTTCAGTGGAGAATTGGGTGGACTGGTAGCTTTATCCAGCGTCAACCCagctttgaaataaatgctAGTTGGGGTTGGGTTCTACCTGGGTTGCGACCTTCTGTTTAAGATGGGGTCACAGTGACGCATGGAAAGCTAGTTTCTGCACTTCCATCTTTAGCCAGCGATACAACAGTCTCTAGCAGtgtaaggggggggggggaacccTCTaaattcatctttaatttctccagtttttttttttttttttttatgatggaATGCTTGAAGCTGCCGCTTGAAGTTCCCCTCCCCACCACGCTCTCATGTCATACAACAAACCAAGGACCTCTCAGATTTTGCCTCAAAAGTGGGCCTGGGGATTTGTACCAGATCCAGATGAAAACGCTCACTGTGTAGTGGGGGACCTAGGCTGTggaatggagagagacagaggtggATCCTGATGCGCAACAGAATCGCTGGACATCGACTTCTTTTATCTTCTCTTTCTACCATTTAACTTGTGGACttgatatgttattttatttttatccaaatATATGTACAGGCTTGGGAAACTGTTAAGTCTGCATGCAAGTCGCTTTAATTCTGTGCAATCGATTACCTTGATTAGAAAAGCAAAGAAGGGGATggactttttttcctttcctgatCGCAGTGGTGTATATGCAGACGTGGGTCCAATGTTTGTgtaatttctatttatttcttatccaAGGCTACCAAAGTATTAatggcaacaaaaaaacacaccctaaaaacatttcaatcacATTGTTTGTTGTGAGGATTCCAGCTCTTGGTTACCAGAGATTTTCACTAAAATGAtagcctgatttttttttttttttttttagaattgtgTGTTCTTTGCTTTCTGTTCACTTTGATTTCAAACCTTCGCCTCAATCTGTATTTCAGCTGGGTTGGAGTTGAGTTGGATTACTATGCGATCCCTAACCTGTATACACCAGTGGGCTTTGAACATCCTATTGGTATTCGTTCTAGATCTGTTTGTGTGTCGAAGCCAACCAAGTGACTGCGATGAATCAGATGTTTTAAGGGGAAACGCTGAAGTAATCCATTTGGTCCTagctgaatatataaataaaaaatctggcCAATCCATATGGGTAGACAGCTAGCTTCTTGCAGTCTAGGCATCAATGTTGTGATGTTTATAGAtctatacgtgtgtgtgtatgtatgtgtatatatatgacagAAAGTTAAGGAACTTGATTTGTTCTTTACTTTCCTGACAGGCAGATTCTGTTTTATAGGGGAGAGTGAATGCTTATGTGCACACAAAAGGAGGGGTACAGCTTTAGGGAAGTCGAGAGTCAGAGTTCAGGATTGCCAGCGTAGAAGAGGAAGCAATAAATGGACTACAGATCTTGTAAAGGCACAGCTTGAATGCAGTTGGGGTGGCATCTTGCTACTGTATATCATCTACTCCATCAGGTACCAGCTGATGCAGTCAGGGCGGGAAACCAAACAACTTTATTATAGATATTAGAAAGCGCACACTGACAGGACAACAGTGTGTTTTAGGAATTCGTGAAGTTTTCCCCTGTGGAGCCGAAAGCAGCTAAACTatcctgtctgtttttgtttgtttttccaatttgCTGCAGATTTGATTGAACCCTCTATCCATTTTCTTCTGGGTGTGTCCCGGTCCCAGGTCTGCTATTCAGGTTCACTAGCTAGAAGTCAGGGAATAGAGACGAGAAATCAGACTTTATTtggagtttatttttctatgattTTCTGGATGCAGTGCACTGTGGTCGATTTTGTTTTGAGGAATACGGCGAGGAGGATCGCAAAAGAGGGGTTCGGTTTGAGAATCGACACAATGACTCCTTTTCAGTGTGGCCCACTAACTGGTTACCCCCCCCTATCCCAACACTTTGATTTTCCAATGAAAGTATTGGGACTGGTAGTGTGatgatctgatctgatctggGCCAAATACCACACTGTGGAGTGTGTTGCTCATGGCAGTTTGTATTACCAGTCCTATACTGTCACTGACCTCTTCAGCAAAACCAAACAGAGTATGGGTGAAATTATctgggattattatttttattattattattttcttatgttatttGATGTAAATACAATGGATATTATATTCAAAAGAGCACTTACAagcaacatttttgtattatgacGATGATTTGTTTGAGTTCTCTGTTGCAACCGGAAGACATtgctttgtctgtttgtttttacttttttgttgttgattttgtatttttttattttttttgtcccccCTAAATCATATAGACATGATGGATAGCTCTGTTCCTGTTGTGAGTTTTTACCCTGTTCTTGTGCAGTGAAGTAGTCTGTATCTGGTCTGACCGCATTTGGCTTGTTCAGCAGGTgaattatttgttgtatttttcattttatgttttgtttgtgtgtttttgttttgtttttttttttgttttttttgggggggggagtggTATGTTGTGAAgttggggggagatggggaaaaAGCTATTTTGTGTGAGTGCTAGAGCTGCATAAACGTGTTTATCCCCACAGAGTGGTCCCAAAGGGAGGTGAAATAGTGCAAGTTGGTGCATTTGAACACTTTGGACTATAAAAAAGTAGTCTACACAAGTTTTCCCTTCGTTTAAGGGAGTAGCGGTATTCACAGATATCCGCTGAATtttccttttatacattttttatataaatctcATTTGATTAAAATCTTACTCCTGCTACTTATTTGACGTGTTTGCTCGGTATTCCCATTCCCCTTACCCCCAGGGCGAATGACAGAATACAACAGGGCGTGTATAGGAGTGCACCCCCAAATTCTTCCCCTTTGCGGCACATCCTCTGGTGTTACACCCTTTTGCTTCCCCCTGGCTTGATTTaataagtttttgtttgttttttttaatggagagaGGGGCCAAATGTAAACAATCGCCCCCCCAAAACAACACTAGCGAAAGCAAAGAGGAAGATGCACTTGGCTACAGTGTGATATGCTCTACTCCTTTTAGACTACCTTTATCTCAACACACTTTTGagttctttcttttaattggAGATCCTAATCCGCTGCAGTATTGAAGTGGCCCTCCTTTCGTGTGACTCCCTCGTAGGTATTGATGTTAAATCCCGATTCCTCTGTTGAAACCAGGATTACAGCACCTACAAGCACCTACAGTGCGAGCAACTACTCCCGCTCCTCGACAGGTTCGCGCAGCTCTGGCAGCCATGCACGAGCCCCCTTCTTCTCCTGTACACTGTCAATCTGTTGTACTCATAAttggaaaaggaagaaaaaaaaaaagtgactgtTTACATAAAGATTTTGTACTGCACCATCCCGGTATGTGTCCCTTATGTACGTGCTTCATTACAAACAAATGAGGGAAACAAATACTCTACAATTGTACaggataaaaaaatgtataaaaacaa

Function

symbol description
rnf41 Predicted to enable ubiquitin protein ligase activity. Acts upstream of or within melanocyte differentiation. Predicted to be active in endoplasmic reticulum tubular network. Is expressed in several structures, including germ ring; muscle; nervous system; neural crest; and optic cup. Orthologous to human RNF41 (ring finger protein 41).

NR:

description
PREDICTED: E3 ubiquitin-protein ligase NRDP1

GO:

id name namespace
GO:0097191 extrinsic apoptotic signaling pathway biological_process
GO:0000209 protein polyubiquitination biological_process
GO:0030318 melanocyte differentiation biological_process
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0031386 protein tag molecular_function

KEGG:

id description
K11981 RNF41, NRDP1; E3 ubiquitin-protein ligase NRDP1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008697 True 6817 mRNA 0.44 6 9081827 9102880

Neighbor

gene id symbol gene type direction distance location
AMCG00008699 NA coding downstream 14397 9036933 ~ 9067430 (-)
AMCG00008694 NA coding downstream 45884 9019960 ~ 9035943 (-)
AMCG00008692 NA coding downstream 113943 8958278 ~ 8967884 (-)
AMCG00008690 NA coding downstream 140004 8941500 ~ 8941823 (-)
AMCG00008691 NA coding downstream 165731 8913938 ~ 8916096 (-)
AMCG00008698 LOC105017093,LOC106583345,LOC106565408 coding upstream 47180 9150060 ~ 9170282 (-)
AMCG00008705 cs,LOC107707042,LOC107715034,LOC107671863 coding upstream 94553 9197433 ~ 9205392 (-)
AMCG00008702 NA coding upstream 120234 9223114 ~ 9229459 (-)
AMCG00008704 NA coding upstream 129246 9232126 ~ 9255654 (-)
AMCG00008703 NA coding upstream 180670 9283550 ~ 9287687 (-)
G50836 NA non-coding downstream 241172 8837359 ~ 8840655 (-)
G50784 NA non-coding downstream 507489 8574014 ~ 8574338 (-)
G50740 NA non-coding downstream 697820 8372506 ~ 8384007 (-)
G50736 cdk2,LOC107683630,LOC107570445,LOC107737371,LOC107696023 non-coding downstream 720865 8357450 ~ 8360962 (-)
G50711 NA non-coding downstream 757052 8278752 ~ 8324775 (-)
G50915 NA non-coding upstream 41464 9144344 ~ 9149938 (-)
G50999 NA non-coding upstream 273692 9376572 ~ 9379452 (-)
G51002 NA non-coding upstream 277871 9380751 ~ 9381754 (-)
G51004 NA non-coding upstream 285378 9388258 ~ 9388608 (-)
G51005 NA non-coding upstream 285944 9388824 ~ 9389048 (-)
G50788 NA other downstream 421810 8656728 ~ 8660017 (-)
G50739 NA other downstream 710497 8367916 ~ 8371330 (-)
G50712 tuba1c,LOC108255233,LOC108433351,LOC103467923,LOC106456382,LOC102313992,LOC107707018,LOC107557552,LOC105930792,LOC107697948,LOC102193505 other downstream 787473 8270324 ~ 8294354 (-)
AMCG00008668 LOC106456382,LOC108433351,LOC107714908,LOC103467923,LOC108433416,LOC103367934,LOC102193505,LOC108255233 other downstream 788341 8281215 ~ 8293486 (-)
G50710 NA other downstream 812501 8269023 ~ 8269326 (-)
G51008 NA other upstream 287963 9390843 ~ 9393227 (-)
AMCG00008741 hdac7,LOC107704627,LOC107752451 other upstream 1235445 10338325 ~ 10370316 (-)
AMCG00008744 NA other upstream 1457986 10560866 ~ 10603373 (-)
AMCG00008748 LOC107666380,LOC108429286,LOC107705699,LOC107681386,LOC107559866 other upstream 1568069 10670949 ~ 10718201 (-)
G51241 NA other upstream 1572876 10675756 ~ 10712485 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000001_13458908_13462457 RNF41.S, RNF41 coding CI01000001 null 13457777 ~ 13462596 (-)