AMCG00008802


Basic Information

Item Value
gene id AMCG00008802
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 12248300 ~ 12259331 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008802
gCTAGTGGAACagctgacacagagagagaggtcgAGAGGAAAGCAGTTCAGTgcatcttcaaaaaaaaaatcccgAAACAGCAGCGGCACGACAGGACAACGCACACAGCTGCCATGGAGACGCCCCCGTGGAGGGTGGAATTCCGGAATGTGGGGCGGAGCTACTTCCCGCAGAGCCGCGTGGACTGTCACTACAGCCTGGGGCCCCAGCACCACTGGGCCAGCAGTGACTGGATTGGACTGTTCAAGGTGGGCTGGGCGTCAGTGAGAGACTATCACACCTTTGTGTGGTCTGTGTCTCCAGAGGGTTACACTGAGGGCAGCGTGGCCAACTGCTGTGTCCATTTCCAAGAGTATCCCGCCCCCCACTCCCCTCAGCTCTACTGCACACTATCCCCTCAGGAATGGAGCTTGGGACCCCAGTTTAAAATAgggcgGCTGGAGGATTGCCTGCGGGAGAGAGCAGAACTGCTGAAGGCCAGAGAGGCggcggagagggggagggagagagagagggggcggaGGGAGCAAGAGACGGAGGagtgggagaaagagagggcaGAGCTGCAGGGGGCCACTGCTCAGCTGAATGCCAAACTCGAACGGGCCAGAGAGGAGATGACACTGACACAGCAGGAGGCGATGAAAGCGGAGAAAGACGCCCTATTGGACGAGAGGGACAGAAACCAGCAGCGAATCAGAGAGCTGGAAGATGACATCAAGGCCATCAGCCAGAgagggctggagagagagattgagttTGACAgGATGAAGGAGCGAGTGAAGAAAATGACCCTGCAGCAAGAACAGCTGCTCCAGcagaagagagaggaggaggaagagagagagagactgcagGCGGAGAGCGAGGCGGTGTGCACAGAGGTGGGCCGGCTGCGGGAGCAGCTGAGCGCCAGCAAGCGGCGGGTGGAGGGGCTGGAGGGGCAGCTGTCCACCACGGTGGGGCAGAGGGACCGCGGGCAGGCCGAGTTGCACCAGGCCCGGCTTGAGGCGGCCCAGCTCACCCTGCAGCTGACTGATGCCCGCCTGGCGCTGAGGGAAGAGCGGGGGCGTTggcaggaggagagggaggccctGCAGCAGATCGCACAGGCGGACAGGGAGAAGCTGAGCAGGCAGCGGGAGGAGCTGGGCCGGCTGGAGGAGCGGCTGCAGGAGGAgcggacagagagggagaaggcaGCAGTGGAGCTGGGCCGAGAGAGGGACTGCAACCGGGTGCAAcgtggagaggcagggagggagctGCAGGAGCTGAGGTCAGGGCTGAAGCtggcacagagggagagggagcagctGcgcACTGTCCCACTGACACAGGAGCTGCTGCGGTACGTGCGTCAGCTGGAACAAAGGCTCGAGGCCGTGGCCGACGCCAAGTGGGGAGACGCCGCCTCCGACTCCAACAGTCGCCCCTGCAGCCCCGTGTCCGAGTCCGAGGAAGACAGTCCTGAGGCCCTGcgccccccccagcccctggGCTCCTACGGCCTGTGCGACCCCCCTGCCATCGGCGCCACAGAAACCCTGCTCCTCACCACGCCCCCCCCGTCCCCACGAGAACCAGGCCGAGGAGGCGTGGTGATCAGCCAGCCTGCCCCCCTCTCCTCACCACGGCAGCAGGAGACggacacactgccacacagctCCGAGTCGgaggacgaggacgaggaagaggaagaggagtccACACAGTCCGCAGGCCACAGCTCAGGAGACGAGACGTTAATGCTGCTGCCCGAGCATAGACACTCAGAGCTGGGTGAGCTCTCTGACGCCCCCCTCTGGCAGTGAAGTTCAGGAAGCGCCACTGCTGCCCCCCTCCTCGGTGGCCACGAGAGGGCGATAGAGAAGCACAACCATTCATCCAGctaatacactcacacacacactgacacaaacaccGGGACTGCAgaacacacactcagacacagtCTTACACACATTGCTCCACCCCCCACAACCACTGACTAACTGACGCACGCACGCAAATGTTCGCTACACACAGCAAATGAACCgatacactgacacacccaGCACACACTGCTGCAAATACGCTCTTAGTTATGGATCGAAAAaccaacagacagacaaattGTGACATTAACGAtctcttattttttgtataaaatattttttgtattgtgggTGGGGCAACGTAGGGGGCGGGGCAACCATCAGTCcctcacctcacctcacctTAGAAACCGAAGATCGTTTTTCAACTACCTATTAAATAATATCCCATCAACTTGGCAAAATACGATAGCGCCCACAGACATCAGATTCCAGCCCTGACTGTAAGCAATGGTGCTATGATACTTTGCAGCGATACGGTTACGGCTCCGAAGGGGAAGCACGCAGGAATGCACACATGTGTTCTGAAGCATGGGCCTGGTCTGTTACAAGCAAGGGCAAAAGCTCCGGCTCAAAGGGGTGTCCGACAGAGAAGGGAGCCTTGAGCACGGAGATTTTAAAAACTGTCGTAGGTGTAAATCAATAGAAACTCAAAGGGTTTGGGGGCTTGCGTACAACTTACTTTGCTCATTTAAGGCCTCCATATCAGTTGCTCAAATACTACACACATCCTCCTACACTGACATAtgctaatgtgtttttaaaaagctgttgtaTACATGGAAGCAAAGGGCTGTGCTCTAGTGTCtagttttgacattttgaagaAATTTCCATATAAGTGCACATTTTGTGGTCTGTTTTTATCAGTAATctagctgtgtttttttttcttttcttttcttttattctatTGCAGTTAGCTGAGATGCTTGTTTTACATTCTATAGTTACTGGATGTTTTTTAGACTTTTACCAAATAAGGGAGCTAGCcatggggtggaggagggatattttgacaaaagcaaagaaaaatgaaaagaagaggGGGAAATGGGAGGGGTGGAACAGAGGGAGGggtgaaggagggagagagttgTGAAAGCAGTTTTGACTATccggtttaaaaaaaatccccatctatatatttttccatttggaGTTGCTTGCTGACTTGCTACCTGCCTCATTGTATGACTGTACTTTGCACAATTTGTACTCTTTGAATATTTACTGTACTTGTAGAATCTAGGTGAGTTCATACATTAAGGAATTCtttgcagttattattattattattattattattattattattattattattttgggcgTTATTTCTGCTCTGTCACATCtatgtctgtatttaatttctgtggGGTCTCGGCTCCTGTCCACACTGTATCCGATCCCGTTTGGTCCGTTATCTTGTTCCTCTCTTAACGAGCTGGGGTCTCCTTCGTTACTGGCTGACCCCTCTCACTGCAGGTGAACTGctgcaataataaaaactgtctctctga

Function

GO:

id name namespace
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process

KEGG:

id description
ko00680 Methane metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008802 True 3401 mRNA 0.54 15 12248300 12259331

Neighbor

gene id symbol gene type direction distance location
AMCG00008801 NA coding downstream 8241 12237425 ~ 12240059 (-)
AMCG00008796 NA coding downstream 86778 12150161 ~ 12161522 (-)
AMCG00008797 NA coding downstream 101960 12107882 ~ 12146340 (-)
AMCG00008794 NA coding downstream 182184 12035166 ~ 12066116 (-)
AMCG00008793 NA coding downstream 214534 12024160 ~ 12033766 (-)
AMCG00008817 cbx5,LOC107664188,LOC107714996 coding upstream 382656 12641987 ~ 12651818 (-)
AMCG00008818 NA coding upstream 394282 12653613 ~ 12653945 (-)
AMCG00008816 NA coding upstream 406504 12665835 ~ 12668432 (-)
AMCG00008822 NA coding upstream 457786 12717117 ~ 12721189 (-)
AMCG00008823 NA coding upstream 466193 12725524 ~ 12735479 (-)
G51588 NA non-coding downstream 154515 12081212 ~ 12093785 (-)
G51574 NA non-coding downstream 237906 12002925 ~ 12010394 (-)
G51403 NA non-coding downstream 990082 11226487 ~ 11258218 (-)
G51354 LOC100846954 non-coding downstream 1083926 11163346 ~ 11164374 (-)
G51344 NA non-coding downstream 1108027 11057677 ~ 11140273 (-)
G51634 NA non-coding upstream 83809 12343140 ~ 12343342 (-)
G51674 NA non-coding upstream 179420 12438751 ~ 12439523 (-)
G51693 NA non-coding upstream 195588 12454919 ~ 12476199 (-)
G51700 NA non-coding upstream 244131 12503462 ~ 12503679 (-)
G51706 NA non-coding upstream 280276 12539607 ~ 12540344 (-)
AMCG00008777 dctn2,LOC102785932 other downstream 921941 11235642 ~ 11326359 (-)
G51250 NA other downstream 1449146 10797632 ~ 10799154 (-)
AMCG00008748 LOC107666380,LOC108429286,LOC107705699,LOC107681386,LOC107559866 other downstream 1530099 10670949 ~ 10718201 (-)
G51241 NA other downstream 1535815 10675756 ~ 10712485 (-)
AMCG00008744 NA other downstream 1644927 10560866 ~ 10603373 (-)
AMCG00008815 NA other upstream 341960 12601291 ~ 12605260 (-)
G51797 NA other upstream 631480 12890811 ~ 12891597 (-)
G51799 NA other upstream 636004 12895335 ~ 12897134 (-)
G51867 NA other upstream 741495 13000826 ~ 13001888 (-)
AMCG00008845 NA other upstream 831206 13090537 ~ 13097934 (-)

Expression


Co-expression Network