AMCG00009313 (LOC107702994)


Basic Information

Item Value
gene id AMCG00009313
gene name LOC107702994
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 32907934 ~ 32923438 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009313
ATGCCCTCCAAAACGACCAAAAGCTCCACTGCTGCGAAGCCGAAGGGACGAGGGGCGCAGCCGCAGGATGATTCCGCGGACGGGATGGAAATACCCCCCGCAGAAATCCACTTCAATGGGGATGTAGCGCCGGACAATCAGAATGCTGCTCCCGGAGTGACACTAGAAGAAGTTGATAATCGGAGTTTAGAGGAGATTTTGAATAGCAtccctcctcccccacccccagcaaTGACCAATGAACCGGGAGCTCCTCGGCTGATGATCTCTCATATTGTAAACCAGAACTTTAAATCATATGCTGGTGAACAGATACTGGGGCCTTTTCACAAGCGCTTTTCCTGCATTATTGGCCCAAATGGCAGTGGAAAATCCAATGTGATCGATTCCATGCTTTTTGTATTTGGATATAGAGCTCAAAAGATCAGATCCAAAAAACTCTCTGTGCTCATTCACAATTCAGATAAACACAAGGACGTACAGAGCTGTACTGTTGAAATCCACTTTCAAAAAATAACCGATaagGAAGGAGATGATTATGAAGTCATCCCTAACAGCAAGTTCTGTGTTTCAAGAACTGCCTGTAAAGATAATTCTTCAGTGTACCACATCAATGGAAAGAAAGCGACCTTCAAAGATGTTGGAATTTTGCTTCGTAGCCATGGAATTGACTTAGACCACAACAGATTTTTGATTTTACAGGGTGAAGTGGAGCAGATTTCTATGATGAAACCCAAAGGCCAAACTGAACACGATGAAGGGATGTTGGAATATCTTGAGGATATCATCGGATCCTGGAGACTTAAAGAGCCCATTCATTTACTTTGCCGCAGAGTTGAGTTGTTAAATGAGCAGAGGGGAGAAAAGCTTAACAGGGTGAAAATAgtggaaaaagagaaagatgCTCTAGAGGGAGAGAAGAATTGTGCCATTGAGTTTCTTAAACTGGAGAATGAAATTTTCAAGAAAAGGAATCATGTTTGTCAGTATTacatCCATGACCTGCAGAAGAGACTTGCTGATAAAGAAGCTCAGAAGCAAAATATCCTTGAAGacacaaaggaaataaatgaaaaaaacggCAAACTTGCCGAAGAGATGAAAGTGAAGAACAAGAATTTAAAAGATTTTGAAAAGAAAATTGGAAAAATCACAAAATTCATtgaagaaaggaaagagaaattCACTCAGTTAGATTTGCAAGATGTGCAAGTCAGAGAAAAACTGAAGCATTCAAAAAGCAAAGTGAAGAAGCTGCAGAAACAGCTTCAGAAGGACAAAGAAAAGGTTGAAGAGCTTAAAAATGTACCTGCTAACAGtgaaaaaagcattttagaGGCAACTGCAAAGAAAGAGGAGCAGGAGAAACAAAAAGTTATTGAGGAAGAAAAATTAAAGCGAGTCATGGAAAGCCTGCATCAGGAAACTCAGGGAAtacaggaagagaaagaggaaaaggagaaaaagcTGATGGAGTTGAGCACAGCAGTGAATGAAACTCGGTCCAAGATGGACGTCGCCCAGTCAGAAATTGATATTTACCTCAGTCGTCACAACACGGCCTTGACCCAGCTGAACAAAGCAAAGGAGGCTTTGCACACTGCCACCGAAACTCTGAAGGAAAGAAAGTCGGCAATTAAGGATCTTGAGATTAAAATACCAAAGTGTGAGGAAGAACTAAAAAAGgatGAACAAGAGCTTGAGAAACTCATGAAAACTGATGTGCAAGTAAGAGAGGGGGTTAAAGAATTACGCCAGAAGGTGGAAGAGGCAAAGAGTTCCCTGTCTTCAAACCGCAGTCGAGGAAAGGTGCTGGATGCCCTCATGCAACAAAAGAAGACTGGACAAATCCCCGGAATACTGGGGAGACTGgGAGATCTTGGGGCTATAGATGAAAAGTATGATGTAGCCATTTCTTCAAGTTGTGGGTCACTGGACAACATCCTCGTTGACACTATTGATACAGCTCAAGAGTGTGTCAATTTccttaaaagacaaaatattggTGTTGCAACCTTTATTGGGCTAGATAAGATGAAAGTGTGGGAGAGAAGTATGGGAAAGATTCAGACTCCTGAGAACATCCCCCGACTCTTTGACATGGTCAAAGTTAAGGATGAGGCTGTCCGTCCAGCTTTCTACTTTGCCCTGCGTGACACACTGGTGGCTGACAATTTGGAGCAAGCCACCCGACTGGCCTTCCAGAAAGACAAGCGATGGAGAGTGGTCACTCTGCAGGGCCAGATCATCGAACAGTCTGGTACAATGACCGGTGGTGGGGGTCGGGTAATGAAGGGAAGAATGGGAACATCTTTGGGGACTGATATTTCTCAGGAGGAGTTGGACAAAATGGAGTTTAGACTGACCAAAGAAACTGAAGTGGCACAAAGCAACCAGGAGCGAAAGGGGCAGCTTGAGGAGCGCGTTCAGAAACTGCGACAGAGCCTCCGTGAGATGAGGAACACTTTGGAGAAGTACACTGCCAGTATCAAGAGCTTGTCCGAGCAAGAAGTTCACCTCAAGTTACAGATGAAAGACCTTGAGGCAAATGTTGCAGCGGCTGCCCCTGATAAGAGCAAGCAGAAACAACTGGAGAAGACCCTGGAGGCTTTCAAAAAAGATTATGAAGCTGCTGCGAGTAAAGCAGGTAAAGTGGAAGCAGAAGTTAAAAGGCTGCACGACCTGATTGTTGACATCAACAGCCACAAACTTAAAGCTCACCAGGATAAACTAGACAAGATCAACAAGGAAATAGACGACTGCTCCTCTGCTATAACGAAGGCTCAAGTTGCAATCAAGACTGCTGGGAGGAACCTTAAAAAATCTGAAGATGCGGTCACTCGCACAGAGCAGGAGACCGTCGAGAACGACAAGGCAATGGAGGACCTAACGGAGGAGCTGAAGAAACTGGAGGAGGCGGCGACGGTGGTCATGAAGGAGTGCAAGGAAGCCGAGGAAGCCCTGCCTGAAATGCAGGAGCAGCGAAAGGCTGTGCTCCAGGAGATCAAAGCGATTCAGGAAGAAGAATACGCCCTTCAGAAAGACTCCCTCAACATCAGGCTGAAGATTGAGCAGATTGACAGTCATATCACAGAACATCAGTCCAAGATAAAACACTGGCAGAAAGAGATTTCCAAGATTTCCCTCCATGCCATTGAGGATGAAGCTGCCACAGAGCTGTCCACCCTCACACCAGAGGAGCTGGAGGCTGTTCACAACCCAGACGTCATCAACAACCAGATCGCCCTTATGGAAGCAAAATGCCTAGAAATGAAACCAAACCTGGGGGCCATTGCAGAGTACAAAAAGAAGGAAGAGTTATACTTGCAGCGTGTGGCTGAACTGGATGAAATCACCAATCTACGAGACAATTTCAGGAGAGGATACGAGGACCTTCGGAAGCAGAGGCTGAATGAATTCATGGCTGGGTTTAACGTCATCACAAATAAGCTGAAGGAAAACTACCAGATGCTTACACTAGGTGGTGATGCCGAGCTGGAACTGGTAGACAGCCTGGACCCATTCTCCGAGGGGATTATGTTTAGTGTCAGACCTCCCAAGAAAAGCTGGAAGAAAATCTTTAATCTCTCTGGTGGGGAGAAAACGCTGAGTTCTCTGGCTCTGGTGTTCGCCTTGCATCATTTCAAACCAACCCCTTTGTATTTCATGGATGAGATTGATGCTGCCCTGGATTTCAAGAATGTTTCAATCgttgcattttacatttatgaacaaaccaaaaatgcCCAGTTCATCATCATTTCATTACGGAACAACATGTTCGAGATTGCGGACAGACTCATTGGGATCTACAAAACTCACAACACCACCAAGAGCGTCGGAATAAATCCCAAGATTATTGCTTCAAAAGAGCTTGTGGAAACCTCATCTGCGTGA

Function

NR:

description
PREDICTED: structural maintenance of chromosomes protein 4-like

GO: NA

KEGG:

id description
K06675 SMC4; structural maintenance of chromosome 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009313 True 3897 mRNA 0.45 23 32907934 32923438

Neighbor

gene id symbol gene type direction distance location
AMCG00009312 NA coding upstream 60061 32847550 ~ 32847873 (+)
AMCG00009309 LOC106612913,LOC106580942,LOC103369651,LOC102193686 coding upstream 107493 32783131 ~ 32800441 (+)
AMCG00009311 NA coding upstream 147805 32759533 ~ 32760129 (+)
AMCG00009308 NA coding upstream 155469 32572939 ~ 32752465 (+)
AMCG00009306 NA coding upstream 342997 32553662 ~ 32564937 (+)
AMCG00009318 nmd3 coding downstream 82537 33005975 ~ 33016571 (+)
AMCG00009317 NA coding downstream 126566 33050004 ~ 33055488 (+)
AMCG00009319 NA coding downstream 333031 33256469 ~ 33257811 (+)
AMCG00009320 NA coding downstream 514248 33437686 ~ 33451270 (+)
AMCG00009323 slitrk3,LOC107570382,LOC107705787,LOC107600237 coding downstream 592499 33515937 ~ 33520985 (+)
G56120 NA non-coding upstream 354030 32548007 ~ 32553904 (+)
G56064 cul3,LOC100710156,LOC107384027 non-coding upstream 728675 32174307 ~ 32179259 (+)
G56062 NA non-coding upstream 739886 32166865 ~ 32168048 (+)
G56021 NA non-coding upstream 850452 32053787 ~ 32057482 (+)
G55929 NA non-coding upstream 1355772 31548531 ~ 31552162 (+)
G56211 ppm1l,LOC108430727,LOC105935930 non-coding downstream 24699 32948137 ~ 32950966 (+)
G56261 NA non-coding downstream 182932 33106370 ~ 33106621 (+)
G56262 NA non-coding downstream 186301 33109739 ~ 33110019 (+)
G56268 NA non-coding downstream 358099 33281537 ~ 33281764 (+)
G56282 NA non-coding downstream 533453 33456891 ~ 33457172 (+)
G56060 NA other upstream 742569 32161760 ~ 32165365 (+)
G55591 NA other upstream 2912496 29995126 ~ 29995438 (+)
G55573 NA other upstream 2996370 29907911 ~ 29911564 (+)
AMCG00009220 lsm2,LSM2,smx5 other upstream 3733203 29171323 ~ 29174731 (+)
AMCG00009208 NA other upstream 3799707 29103608 ~ 29108227 (+)
G56368 NA other downstream 1077358 34000796 ~ 34031445 (+)
G56369 NA other downstream 1092232 34015670 ~ 34018815 (+)
AMCG00009345 NA other downstream 1439981 34363419 ~ 34369257 (+)
G56536 LOC100846954 other downstream 2465476 35388914 ~ 35389327 (+)
AMCG00009404 NA other downstream 4370465 37293903 ~ 37297009 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) LOC110503326 LOC106580963 coding NC_048588.1 CM023242.2 13559526 ~ 13584428 (+)