AMCG00009564


Basic Information

Item Value
gene id AMCG00009564
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 41678552 ~ 41683695 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009564
TAAAGGTACAATGGTAAATATGTCTGGTTGGCTTGCTCAGTGAACGGCGTATTGTGTTCAACTTCAGCCACCGGAAGTGGCCGTGGGGGACTGATTTGAGGTGACACCCGCGACTCTACGCGCAGACATGGCAGGAGCTGGGAGGAAGAAGCCTGCTGGTCCGCCGTCCCGGCTGTGGGGGACACTAAGCACAATATGGCAGGAGAAACACTGGATCCTGTTCAGGGCCGAGTACACGTACCTGGTCACGGCGCTGCTGTggctggcggagatcggcatCAACGTGTGGGTGATACACAGAGTGGCATAGATTGACTGGAAAGCCTACATGGACGAGGTGGAGGGAGTCATTAATGGCACCTACGACTATACTGAGCTCAAGGGAGACACGGGACCTCTGGTGTATCCGGCTGGGTTCGTGTACATCTTCACAGTGCTGTACTATGTCACTGGTCATGGGGTGAATATCCGTCTTGCACAGTACATATTTGCGGCCTTTTACCTCGTGACGCTGCTGCTGGTGTTTCGGATCTACCACCGCACCCAGAAGGTCCCGCcgtatgtgtttttcttcatgtgCTGTGCCTCCTATCGCATCCACTCGATCTTCGTCCTGCGTCTGTTCAACGACCCCGTGGCAATGCTGCTGCTCTTCGGGGCCCTCAACCTCTTCCTGGACGGCCACTGGACCCTGGGTTGTGGGATCTACAGGCAAGTCTGCCGACTCAAAACACAGGGCAGTTTAGCAGTATCTGTGAAGATGAATGTACTCCTCTTTGCTCCTGGTCTTCTCTTCCTGCTGCTGTGGGAGTTTGGTCTGCTAAAGACCCTGCCCAAGCTCGTTCTCTGTGCAGCTATACAGGTGTTGCTCGGCCTGCCCTTCCTGCTGGAGAACCCCCTGGGCTATCTGAGCCACTCTTTTGACCTGGGCCGCCAGTTTCTCTTCCAGTGGACGGTCAACTGGCGCTTTCTGCCCGAGGACATCTTCCTGAGCCGGTACTTCCACCTGGCCCTGCTGGGGGCCCATCTCCTCACCCTGCTGCTGTTTGCGGTGCGCCACTGGAACAGGTCCGGAGACAGTGTTGTCGCCCTGCTGAAGGACCCAGCCCAGCGCAAGGAGCCACCACAGAAACTCACTGCTGCTCATATCCTTTATGCCGGTCCTTCCCCCCGCAGCCCAGTCCCTGCTGGTCCCTCTGTGCATATAGTCTTCACCCTCTTTACCTCGAACTTCATCGGGATATGTTTCAGCCGCTCACTGCACTACCAGTTCTACGTCTGGTACTTCCACACCCTGCCCTTCCTGCTCTGGAGCGGCGGAGTGAGGAAGCTGGCTCACCTGCTCAGGGTGCTGATCCTGGGATTGATCGAACTGTCCTGGAACACCTACCCCTCGACCGTCTACAGCTCGGCTGCGTTGCATGTGTGCCACCTCATCATCCTGCTGTCCCTGTGGCACGCCCCGCCGCCCAGCGACACCGAGACCACCCCCCAACGCAAGCGCATGTGACCGGACTCTGGCTGTCCTGCCGGGACACTCACGGTGTTGGCTGCACAGACCAGGATGCGCTCTCGCCTGGGTGGGGGGTCGCAGCACAGCGCAGGCGGAGGAGAAGTCAGTCTTAAATCCAAAGAGGCCCCATTCTTTCAGTCTCTCGATACAGCAATGGGGGGGTTTCCTTTTCGATTCGGAGGCGGAAAGCAGTGCCGTCCGGAggctaaggaaagaaaaatggtcAGCTTGTCCGTCAGATTTCCGGTCTCTGTTCAGATCCCCTGCTGCGAGCACTCGATTGCTGTCTGTGTACGAAACTGAGAcgtaaaattaaaaatactcaggtatgaatacaaatatttgtactatagttttttttgcattattctaaatttaaatgtgatttttgtagCATGTTGTCtccatgtttttgtgttgaGTGAAGCTTGTAACCTGCAGAATGAAACGTGTATCGCTTTTtggaaaaactgtaaatgaatgcaaatgttCGTAGGCCTCCTGTATTTCACTTCCCTCCTGACTGTTCATGATCATTTCAGGAACTGTTTTCTCAAAATCCATTTACGTCCTCGCGGTGCTCAGTTGTTAAACACCAGTTTATACCATGGTACCATTTCATAAACACGCTCTGTGTCTCCATCTGTGTTTTCTTGATCTTCTCATTTGTGTGCCAGGGTTTTTTCATGTTgtcaaaatagaaaaacaatacaagtctgTTACCTGGGGAATCAAAAAGGCTGTTCATGtagtattattttcttacagtgggagtaagaaatacatataaGTATAATTAGATCATTTTTCACCTTTTATATAATCTtgattctgtaaaaaaaaaaaaaccacaggTGCTCTG

Function

GO: NA

KEGG:

id description
K03845 ALG3; alpha-1,3-mannosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009564 True 2375 mRNA 0.52 9 41678552 41683695

Neighbor

gene id symbol gene type direction distance location
AMCG00009556 NA coding upstream 89798 41586666 ~ 41588754 (+)
AMCG00009562 NA coding upstream 109720 41560388 ~ 41568832 (+)
AMCG00009554 NA coding upstream 168705 41504994 ~ 41509847 (+)
AMCG00009555 NA coding upstream 179747 41485230 ~ 41498805 (+)
AMCG00009552 NA coding upstream 198556 41476537 ~ 41479996 (+)
AMCG00009568 NA coding downstream 91514 41775209 ~ 41784537 (+)
AMCG00009569 NA coding downstream 149176 41832871 ~ 41844457 (+)
AMCG00009575 NA coding downstream 218138 41901833 ~ 41910118 (+)
AMCG00009577 NA coding downstream 267972 41951667 ~ 41960909 (+)
AMCG00009579 LOC107712727,LOC103384719 coding downstream 295842 41979537 ~ 42029964 (+)
G57690 NA non-coding upstream 178334 41499964 ~ 41500218 (+)
G57599 NA non-coding upstream 745342 40932967 ~ 40933210 (+)
G57597 NA non-coding upstream 848875 40829072 ~ 40829677 (+)
G57544 NA non-coding upstream 1335171 40339382 ~ 40343381 (+)
G57523 NA non-coding upstream 1518926 40159409 ~ 40159626 (+)
G57770 NA non-coding downstream 65860 41749555 ~ 41750144 (+)
G57775 NA non-coding downstream 132226 41815921 ~ 41817795 (+)
G57792 NA non-coding downstream 155470 41839165 ~ 41839466 (+)
G57843 NA non-coding downstream 401584 42085279 ~ 42088145 (+)
G57940 NA non-coding downstream 718540 42402235 ~ 42402452 (+)
AMCG00009563 camk2n1a,camk2n2,LOC107659987,LOC108443638,LOC107557885,LOC103024774 other upstream 79428 41596229 ~ 41599124 (+)
G57604 NA other upstream 683893 40990802 ~ 40994659 (+)
AMCG00009516 NA other upstream 1573500 40086474 ~ 40105052 (+)
G57430 NA other upstream 1729352 39948006 ~ 39949200 (+)
AMCG00009480 sst1.1,LOC106579799,LOC105009822,LOC107586749,LOC103023622,LOC107582287 other upstream 2241535 39434900 ~ 39437017 (+)
G57830 NA other downstream 352323 42036018 ~ 42078241 (+)
AMCG00009647 NA other downstream 1753295 43436990 ~ 43444420 (+)
G58324 NA other downstream 2249257 43932952 ~ 43935762 (+)
G58522 NA other downstream 2702802 44386497 ~ 44407568 (+)
AMCG00009694 LOC103385381 other downstream 2878082 44561777 ~ 44570531 (+)

Expression


Co-expression Network