AMCG00009724 (LOC108265805,LOC108437579)


Basic Information

Item Value
gene id AMCG00009724
gene name LOC108265805,LOC108437579
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 45057674 ~ 45087487 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009724
ATGAAGTTGCACAACCTTAAACATGACACACGTGATTTACCAGTGTTTACCCTGGGCCCCCGCGGCTTCGGCTTCAACATCGTGGGGGGCAGCCGGCCGCGCGAATTCCTGCAGGTCTACAGCGTCACCCCGGCGGGACCCCCAGCCCTGCACACAGCGGACATCCTGGTGTACATCAATGAGACGTGTGTTCTGGGTCTGTCACACAAGGAGGTGGTGGAGATGCTGAAGGCGGTGCCGGTGGGGCACAGCGTGGACGTGGTACTGCGCCGGGGCTACCCCATGCTCTACAACCCTGATGGCTGCCCCAAGCTCCGCAGGACGGCCGCCTCCCATGGCGACGCCCAGCACATGGCAGTCGTGATGTCACAGAGggTGTCTTTGATCcgcaaccacaacaacaactcCCTGCGTGGTGGCCCCCTCCAGGGCACTGAGGGGGACCCCCAGACTGCTGCCACCCTGACCGCACCCCCCCCTGCTGCCGCCGCCAGCAAACTGCtcctgcccctgcccccccctTCTGACCCCGGGGGGGCAGCTGGTGGGGGGGTAGCCAGTGGCGGGGCAGTGGTAGGGGGGGCCAACACTAGGCTGCTCAAGCCCTTGCCCTCAGCCCCCACACTGAAACCCCCATCGTCGGACCCGCAGCAGCCGCCCCCCCCAACACAGCAGTGCGGCTTCGATGGTTGCCCCGGAAACAGCACCAACACCAGCCCCAGCAGCCCCGGGGGTGGCAGCCTCCTGTCTCCGGGGGCCACGGGGCCCGGGGGCGGCGAGCTGGTGCCCGTGGCTGTGGGGCGCAGCGAGCAGGGCATGGGCTTCAGCGTGACAGCCGGGGGGCCAGGGGGCCGGCTGGCGCTGGTGAAGCGGGTGTGGGACCGGAGGCAGTGCCCCTCCCTGCAGCCTGGTGATGCAATCCTGAAGATCAATGGTGCCGACGTGCAGAGCCTCAGCTTCGCGCAGGTGCACAGGGTGCTGCAGGAACACACGCGGCAGGGCGAGGTCGTGCTGCTCGTCTACCGGGGCGGCCCCCTGCGCTCCCCTCTGTCCCCCGGCGCCAGCAGGAGGATCACTCACCTGCGGATGCCCCCCCCCGCACCCCCCCACGCCACCCTGGACAGCGCCAACGCCAACCTGCCCCCCTCGGAGCCAGCCCTCCTGCTCAGCCCCGCCGGCCCCCCCGACCCCCCCGGTCCCCGCCCGGCCGCCCCCTCTCTGAGCCTTGACCCCACGCTGACCTCCGTGGTCCAGAGCACCAGCTTCCTGGACTCGGTGCCAGTGACCTTGACCCTGGAGCCGCGCGACTGGCTGAGCCCCGAGGAAGTGGTCGGGCGGGGGGctggggcggtggggggggcCCTGGGGCAGCAGCCGGACTGGCACAATGCCCTGCTGTCCCACGCCGTGGAGGTGGAGTTGCGCAGGAGGCCGGGGGAGGGGTTCGGCTTCATCATCGCCTCGCAGGACGTGGAGAATGGCAAAGCTGCCTCCCTGTTGCCCCACAAGTTTATCCAGATCCGGAGGGGCAGCCCGGCGGCCCGCAGTGAGCGGCTGCACGCAGGTGACCGGCTGGAGGGTGTGAACGGACAGTCGGTCCTCACTCTGCCGCACCGCGAGCTGGCCGACATCTTCCGCCGCGCCGGGAACACCATCCGCCTGCGCATTGTCCCCCGCAGCAGCACCAacTCCTCCAGCCTCTCAGAGTCCACGGAGCTCGAGCAGGATGCCCGGGCGCGGAAGGGTCACAGGCCTCGGCCCAAGCAGGACTCCAGGTTCTACAGTGTGGATCTGGATCGGGGGCCCACGGGCTTCGGGTTCAGCCTCCGGGGGGGCAGCGAGTACAACATGGGCCTCTACGTCAGTGACCAGCTGGTGGAGATCAATGGCGACAGCACCACGGGGATGACTCACAGCCAGGCCGTGGACCAGATCCGGCGCGGAGGAAACCGGATCCACCTGGTCCTGAAGAGGGGCAACGGATACGTCCCCGATTATGtggagctctccagtctctctctctgtatgacCAACTCTAAGCTGGGAGAGCCCTGCTTCTATGTCATCGGCCGTACTGAGAATACGCGCACCTCCTTCTCATCAGTCAGTCTGTGCGGCGTTCCTGTCTTAGTGCTGCAGCGTTCACCTCCATTACCTCATCACCaccGTGAGCCCAGAGGACAGTCGCCCTCCTCCGCCGTGTTTCCCGGGGAGCAGAGTGTGGATTCAGTAGAGGGCGCCGTCAGCCCCGACACTGACCGCCCCCACCACGGCAGTAGGTCAAAGGTCAAGGGCAGTCGGCGGAGAGGGGCGGAGGatgacgaggaggaggaggagcgagaggaaggagagaaggggagggggaggagcaGGGGGTGGTGGCGTGGGGAGGGCGAGGGCAGCAGCccaggggaggaggaggatgacaCCGAGGCGGACGAGGTGCTGGAGCACTGGAGCGCGGACCCCCGGCCCGGAGACGCCCCCAGGCCCGGGCGCTGGATCACTCCGAGCCGGGAGAGGCTGCTGACCGTCCTGCAGGCCAGGCCActggcgggggggcggggggccgTGTGA

Function

NR:

description
PREDICTED: membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1-like isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009724 True 2577 mRNA 0.68 14 45057674 45087487

Neighbor

gene id symbol gene type direction distance location
AMCG00009725 LOC105419832 coding downstream 11241 45042846 ~ 45046433 (-)
AMCG00009723 NA coding downstream 24959 45030917 ~ 45032715 (-)
AMCG00009717 NA coding downstream 80919 44969962 ~ 44976755 (-)
AMCG00009718 LOC106566500,LOC105009055,LOC102795717,LOC107584920,LOC107735484 coding downstream 130636 44922089 ~ 44927038 (-)
AMCG00009713 LOC107601746 coding downstream 249187 44789130 ~ 44808487 (-)
AMCG00009732 NA coding upstream 25946 45113433 ~ 45114885 (-)
AMCG00009733 NA coding upstream 32824 45120311 ~ 45124004 (-)
AMCG00009740 NA coding upstream 158225 45245712 ~ 45246944 (-)
AMCG00009741 NA coding upstream 179916 45267403 ~ 45269612 (-)
AMCG00009747 cdk20,LOC107727427 coding upstream 193715 45281202 ~ 45283020 (-)
G58724 NA non-coding downstream 57440 44998032 ~ 45000234 (-)
G58707 NA non-coding downstream 140785 44916631 ~ 44916889 (-)
G58699 NA non-coding downstream 164591 44892792 ~ 44893083 (-)
G58654 NA non-coding downstream 270902 44785604 ~ 44786772 (-)
G58613 NA non-coding downstream 392343 44665122 ~ 44665331 (-)
G58761 NA non-coding upstream 2730 45090217 ~ 45119224 (-)
G58808 NA non-coding upstream 96874 45184361 ~ 45250020 (-)
G58807 NA non-coding upstream 132142 45219629 ~ 45241933 (-)
G58901 NA non-coding upstream 244728 45332215 ~ 45336884 (-)
G58902 NA non-coding upstream 249668 45337155 ~ 45339418 (-)
G58653 NA other downstream 272540 44782918 ~ 44785134 (-)
G58589 NA other downstream 490840 44566069 ~ 44566834 (-)
G58584 NA other downstream 514865 44541894 ~ 44542809 (-)
AMCG00009697 NA other downstream 545425 44501787 ~ 44512249 (-)
AMCG00009672 NA other downstream 1062020 43989511 ~ 43995654 (-)
AMCG00009739 NA other upstream 81454 45168941 ~ 45230457 (-)
AMCG00009742 NA other upstream 164150 45251637 ~ 45277597 (-)
AMCG00009748 NA other upstream 233270 45320757 ~ 45326055 (-)
AMCG00009755 NA other upstream 371256 45458743 ~ 45465377 (-)
AMCG00009766 srpk3,LOC107601770,LOC107674354 other upstream 550260 45637747 ~ 45642744 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_036419 magixa coding NC_007119.7 CM002892.2 22761854 ~ 22838364 (-)
grasscarp (Ctenopharyngodon idella) CI01000010_00691767_00731442 MAGIXA, MAGIX coding CI01000010 null 691767 ~ 731442 (-)