AMCG00009739


Basic Information

Item Value
gene id AMCG00009739
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 45168941 ~ 45230457 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009739
ACGCAcaggctgctctctctctctctctctctctctctctctcggacgactcgtctctgtctgtctgtctgtctgtctgtgtgtcggTGAGGGAGCAGGAGGCggatctctgtctctgtctgtctgtctgtgtgtctgtgtgtcggtGAGGGAGCAGGAGGCGGATCTCTGTGCAACAGTTGCGCTGCTCGGCTGCTTCTTCACTTCAGCTCAGCCGCGTCACTCTGCTGTTTCTCACTCAGTCCTGCGTCTCGGAGGAGTAGCGGTGGAGTTGCGCCGTAGTTGGTACTTTTCTCCAGCATGGCCGACACAGACGCGGACAGCCCGTCCGGGAACGtcatggagaggctgaaaagttACATACGGACCCGCAAAGGAGCCCTGCTGGCCGCCGAGATAGGCATCTGCCTGGTGGTGTTGATCTGCTACGCAGCCTCGTCATATGGGGGCTACAGCGCCGTGGCCATCTGTGAGATGATCTTCGCCATCATCTTCTTCGTCATCTTCATGATGGAGTTCGACAAGCAGTTCGCCGCCATCTCCTGGCCCTGGAGCGACTTTTTCCGGGCGATCATCGGCGCCGGGCTGTTCCTCATCACATCTCTGATCTCGGTGATCGGGGGAGGAGACGGTGCCCGCATTGCCGGCGGGgtgTTTGGGTTAATCGCAGGGATCCTGTTTGCCTACGATTCCTACTTGGGCTACCTGGCCATCAAGGCCTCAAAACAGCACCATGCCACTGCCACCAGCGATCCAGAGTCCGGAGACTAAGCCGAGCCGGACGCCTCCTTTCTTGACGTTGACAAGAGACACAAGCAcagacgaggaggaggagattACAGCGCGGGCGAGGCCAGGGACACACGGCAAACACGGAGCGAGGATACGCTGGGGCAGCcggaggagagggggatggCACAGAAACCCCAAAAAACATTGTGCAAGAGTGCAGACCAATTCTGAGAACACACACTTTCTCACAGTCACACAATTTCACtctcacacagacgcacactcacagtcacacacatgcAGCCCCCTCCAAGCAATACTGGCAGCTTTTCACACCACAGCCATCAGAATAGGGACACAACGGTACTTTctaccatctctctctctccctccatccctctcctcCTCACCGATCCCCCCCACTCATCTCTCTCCACACTGCTACTGCtgacaaataataacaacaacaaccatgtttttgcattttgtgtttcaggtataataatattaattacaaaagtTGACGGGTGATAAATCGTTGTACTGCTGTTGGCGTGTGGGAGGCCGGGGTCTCGGCTCGGCCGTGTCTGTGGCCCTGGGGGGCCGTCGTGTGGAGTCACAGTCCAGCAGCAGCTAAAGGTCGACCCTCGATTGACGTTTGGGTCTGCtggactgtggctctccaggaccaggggcCTACACACCCCCCTCTCCATCCCCGGTTACTTGATTCCCCTGCCGGCCCCCTCCAGCTCCACGCCAGATCCTTACTGGCATTTTGACACCAAACCAGTTCTGTTTTAAGTCGTCTTTTGTCGTTTGAAGAAGAGCGACAGTAAAGGGAAACACGGTTTAAAGaaacattgtcattgtcatttttgttgttctgtatTAAGTTGTTTTTCGTTGGAAAGTAAAGTATATGTGTAAATCGGTATATTTCCTCGTTCGGTGCAAACATTAAGggattgtttattaattaagatatattaataaaaccctCTTTGACAAACTGTGACTCAGTCTAATCTAGTTCTCTCCTGTCATTGGCTCACAACTTACAGGTCAACATGAAAAGACACAGTCAGTAGATAgtagagacacagtccagtccagca
>TU73509
gaggaccAACGCCCTGTCTTTCCGTCTGCGCTGTGAGCTCCAGTGAAGGACGACGCAcaggctgctctctctctctctctctctctctctctctcggacgactcgtctctgtctgtctgtctgtctgtctgtgtgtcggTGAGGGAGCAGGAGGCggatctctgtctctgtctgtctgtctgtctgtctgtgtgtctgc

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009739 True 1850 mRNA 0.53 5 45224089 45230405
TU73509 False 199 lncRNA 0.58 2 45168941 45230457

Neighbor

gene id symbol gene type direction distance location
AMCG00009733 NA coding downstream 44937 45120311 ~ 45124004 (-)
AMCG00009732 NA coding downstream 54056 45113433 ~ 45114885 (-)
AMCG00009724 LOC108265805,LOC108437579 coding downstream 81454 45057674 ~ 45087487 (-)
AMCG00009725 LOC105419832 coding downstream 122508 45042846 ~ 45046433 (-)
AMCG00009723 NA coding downstream 136226 45030917 ~ 45032715 (-)
AMCG00009740 NA coding upstream 15255 45245712 ~ 45246944 (-)
AMCG00009741 NA coding upstream 36946 45267403 ~ 45269612 (-)
AMCG00009747 cdk20,LOC107727427 coding upstream 50745 45281202 ~ 45283020 (-)
AMCG00009746 LOC105912249 coding upstream 56561 45287018 ~ 45305373 (-)
AMCG00009744 NA coding upstream 84818 45315275 ~ 45318328 (-)
G58761 NA non-coding downstream 49717 45090217 ~ 45119224 (-)
G58724 NA non-coding downstream 168707 44998032 ~ 45000234 (-)
G58707 NA non-coding downstream 252052 44916631 ~ 44916889 (-)
G58699 NA non-coding downstream 275858 44892792 ~ 44893083 (-)
G58654 NA non-coding downstream 382169 44785604 ~ 44786772 (-)
G58901 NA non-coding upstream 101758 45332215 ~ 45336884 (-)
G58902 NA non-coding upstream 106698 45337155 ~ 45339418 (-)
G58903 NA non-coding upstream 109043 45339500 ~ 45345259 (-)
G58904 NA non-coding upstream 142301 45372758 ~ 45373072 (-)
G58940 NA non-coding upstream 243078 45473535 ~ 45554714 (-)
G58653 NA other downstream 383807 44782918 ~ 44785134 (-)
G58589 NA other downstream 602107 44566069 ~ 44566834 (-)
G58584 NA other downstream 626132 44541894 ~ 44542809 (-)
AMCG00009697 NA other downstream 656692 44501787 ~ 44512249 (-)
AMCG00009672 NA other downstream 1173287 43989511 ~ 43995654 (-)
AMCG00009742 NA other upstream 21180 45251637 ~ 45277597 (-)
AMCG00009748 NA other upstream 90300 45320757 ~ 45326055 (-)
AMCG00009755 NA other upstream 228286 45458743 ~ 45465377 (-)
AMCG00009766 srpk3,LOC107601770,LOC107674354 other upstream 407290 45637747 ~ 45642744 (-)
AMCG00009769 phf8,LOC107563633,LOC106567021,LOC107716077 other upstream 518219 45748676 ~ 45757951 (-)

Expression


Co-expression Network