RNA id: AMCG00009739


Basic Information

Item Value
RNA id AMCG00009739
length 1850
RNA type mRNA
GC content 0.53
exon number 5
gene id AMCG00009739
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 45168941 ~ 45230457 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACGCAcaggctgctctctctctctctctctctctctctctctcggacgactcgtctctgtctgtctgtctgtctgtctgtgtgtcggTGAGGGAGCAGGAGGCggatctctgtctctgtctgtctgtctgtgtgtctgtgtgtcggtGAGGGAGCAGGAGGCGGATCTCTGTGCAACAGTTGCGCTGCTCGGCTGCTTCTTCACTTCAGCTCAGCCGCGTCACTCTGCTGTTTCTCACTCAGTCCTGCGTCTCGGAGGAGTAGCGGTGGAGTTGCGCCGTAGTTGGTACTTTTCTCCAGCATGGCCGACACAGACGCGGACAGCCCGTCCGGGAACGtcatggagaggctgaaaagttACATACGGACCCGCAAAGGAGCCCTGCTGGCCGCCGAGATAGGCATCTGCCTGGTGGTGTTGATCTGCTACGCAGCCTCGTCATATGGGGGCTACAGCGCCGTGGCCATCTGTGAGATGATCTTCGCCATCATCTTCTTCGTCATCTTCATGATGGAGTTCGACAAGCAGTTCGCCGCCATCTCCTGGCCCTGGAGCGACTTTTTCCGGGCGATCATCGGCGCCGGGCTGTTCCTCATCACATCTCTGATCTCGGTGATCGGGGGAGGAGACGGTGCCCGCATTGCCGGCGGGgtgTTTGGGTTAATCGCAGGGATCCTGTTTGCCTACGATTCCTACTTGGGCTACCTGGCCATCAAGGCCTCAAAACAGCACCATGCCACTGCCACCAGCGATCCAGAGTCCGGAGACTAAGCCGAGCCGGACGCCTCCTTTCTTGACGTTGACAAGAGACACAAGCAcagacgaggaggaggagattACAGCGCGGGCGAGGCCAGGGACACACGGCAAACACGGAGCGAGGATACGCTGGGGCAGCcggaggagagggggatggCACAGAAACCCCAAAAAACATTGTGCAAGAGTGCAGACCAATTCTGAGAACACACACTTTCTCACAGTCACACAATTTCACtctcacacagacgcacactcacagtcacacacatgcAGCCCCCTCCAAGCAATACTGGCAGCTTTTCACACCACAGCCATCAGAATAGGGACACAACGGTACTTTctaccatctctctctctccctccatccctctcctcCTCACCGATCCCCCCCACTCATCTCTCTCCACACTGCTACTGCtgacaaataataacaacaacaaccatgtttttgcattttgtgtttcaggtataataatattaattacaaaagtTGACGGGTGATAAATCGTTGTACTGCTGTTGGCGTGTGGGAGGCCGGGGTCTCGGCTCGGCCGTGTCTGTGGCCCTGGGGGGCCGTCGTGTGGAGTCACAGTCCAGCAGCAGCTAAAGGTCGACCCTCGATTGACGTTTGGGTCTGCtggactgtggctctccaggaccaggggcCTACACACCCCCCTCTCCATCCCCGGTTACTTGATTCCCCTGCCGGCCCCCTCCAGCTCCACGCCAGATCCTTACTGGCATTTTGACACCAAACCAGTTCTGTTTTAAGTCGTCTTTTGTCGTTTGAAGAAGAGCGACAGTAAAGGGAAACACGGTTTAAAGaaacattgtcattgtcatttttgttgttctgtatTAAGTTGTTTTTCGTTGGAAAGTAAAGTATATGTGTAAATCGGTATATTTCCTCGTTCGGTGCAAACATTAAGggattgtttattaattaagatatattaataaaaccctCTTTGACAAACTGTGACTCAGTCTAATCTAGTTCTCTCCTGTCATTGGCTCACAACTTACAGGTCAACATGAAAAGACACAGTCAGTAGATAgtagagacacagtccagtccagca

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73456 lncRNA downstream 104865 45090217 ~ 45119224 (-) True G58761
TU73413 lncRNA downstream 223855 44998032 ~ 45000234 (-) True G58724
TU73394 lncRNA downstream 307200 44916631 ~ 44916889 (-) True G58707
TU73386 lncRNA downstream 331006 44892792 ~ 44893083 (-) True G58699
TU73319 lncRNA downstream 437317 44785604 ~ 44786772 (-) True G58654
TU73621 lncRNA upstream 21979 45252384 ~ 45277597 (-) False AMCG00009742
TU73634 lncRNA upstream 101810 45332215 ~ 45336884 (-) True G58901
TU73635 lncRNA upstream 106750 45337155 ~ 45339418 (-) True G58902
TU73636 lncRNA upstream 109095 45339500 ~ 45345259 (-) True G58903
TU73637 lncRNA upstream 142353 45372758 ~ 45373072 (-) True G58904
AMCG00009733 mRNA downstream 100085 45120311 ~ 45124004 (-) True AMCG00009733
AMCG00009732 mRNA downstream 109204 45113433 ~ 45114885 (-) True AMCG00009732
AMCG00009724 mRNA downstream 136602 45057674 ~ 45087487 (-) True AMCG00009724
AMCG00009725 mRNA downstream 177656 45042846 ~ 45046433 (-) True AMCG00009725
AMCG00009723 mRNA downstream 191374 45030917 ~ 45032715 (-) True AMCG00009723
AMCG00009740 mRNA upstream 15307 45245712 ~ 45246944 (-) True AMCG00009740
AMCG00009742 mRNA upstream 21232 45251637 ~ 45261295 (-) True AMCG00009742
AMCG00009741 mRNA upstream 36998 45267403 ~ 45269612 (-) True AMCG00009741
AMCG00009747 mRNA upstream 50797 45281202 ~ 45283020 (-) True AMCG00009747
AMCG00009746 mRNA upstream 56613 45287018 ~ 45305373 (-) True AMCG00009746
TU73318 other downstream 438955 44782918 ~ 44785134 (-) True G58653
TU73240 other downstream 657255 44566069 ~ 44566834 (-) True G58589
TU73235 other downstream 681280 44541894 ~ 44542809 (-) True G58584
TU73231 other downstream 711840 44508253 ~ 44512249 (-) False AMCG00009697
TU73015 other downstream 1228435 43989511 ~ 43995654 (-) True AMCG00009672
TU73631 other upstream 90438 45320843 ~ 45323950 (-) True AMCG00009748
TU73632 other upstream 90438 45320843 ~ 45323322 (-) False AMCG00009748

Expression Profile