G58902


Basic Information

Item Value
gene id G58902
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 45337155 ~ 45339418 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU73635
TCCTCTTTGCCCTTTAAAAGCAGAACTCTGAACCCCACTGATTGGTTGATTGTTGTTTCCTCATTGGTTTTCGTTTGATTTCGTTTTgttatttgaaaaggaaaaaaaaaagtctccaaACCAAATTGTGCGTCTCCTCAAGTGTTGCTAGGAGAGCAGttcagtgacacacacacaattaaatcaaaGAGCTTCCACGTGCCCAGATGGATCCTGACTGGGGGGGCGGGCCTTGTTGGGTCCTTGTTGTTGTgcgactgtgtgtgtctgggcaGTGTCTGTAGCATCGGCCCTGTGGCATCCAGCGGTGCCCCACTGCGTCCCGGGGACCCCAACGTGCGTTACTGGGGAGACAGTGTGTTATAAAAATCACAGATTACTCTTCACACCAGGATGattacactgacacacacacacacacacacacacacacacacacacgtatacatatatatgcacagaTATATATTTACGTACAACAAACAGACAGTGTAAGTGGCCTTTGAAGCATCTGTAACGGAGACAAAAGACGGGTTTTCCTCCTGTCGAGGGACGTTGTGTGTGGTGTTGTGGTCTCCTGCTCACAGGTGGGGGAGCAGCACTGGCACTGGTCTCTTCCCAACTTGGACACGATCGAAAAACAGCCACAGAATAAAGTGACGGACTCGGACAGAGGACTTCAAGAACACAGTTGTTCAATTGTGGATCTGCTGCAGACTGAAGTACAGCAAGTGGGTCCTTACCAGAGAAAAAGAAGGGATGAACGGACGAGAGGATTGACCCTGTGTTCCGCTGACGTGTTTCCTGTAGCGGGGCCAGGGCCCTTAGTGTCATGTGTTTGTCACCCCGGACGGCGAGACGCTGAATTGTATAGTAACGAATGTCTGTGAGGGAGGGACGGGGGGGTTGGGGATCGGTGATGTAACTGGGAATATGATCCCCCCCACTGCTATACCAAGACAAACGGACAGAACCTCTAACTTTCTGTGAGTGTgagagatagtgtgtgtgtgtgtgtgtgtaaagtcaCAGATGACCGTGCTCTCTCAAGTCCTGGTGTGTGCTGTGTCACGTGTGCAGTGATGCTCATGGCTGTCTGACTCCGAATGTATGGTAACCTCGTCCGTTTAGCTTTCTGTTTtcgattggtttgttttttttgttagtttttttttttactgaaatgaTGAATAAGTACAGCAGGAGAGAAAGATGTGAGCAGGGGGGGGAGAGATCTGTGCCGTAGCGCTGCACCGTATCCACGGGGCCGACTATCCCCCCCCGCTCGGCATGAGGCTGGGTGAGGCATCGTGTCCCCCTGGAGACAGGGTGTGGGGGGGATTCAGTGCCCATTGACAGGGACCCCACAGAGGCGATGCATACGTGTCCACAGGAGACATTCGGTCATATTGACTCGTGGACATGTGCCGTCCCATCTTCAATGTCTCCCCTCATTcccgttattattattattgggaaaGTGTCCTACGGGACCGGGCGGCTCTCCCCGTGCCGTGCTGGGTTTCAGGGTTGGCTGTTAGTCCAGCTGTGTTGTGTAGCATGGGGCGGGAGGGACGGGGGGCCACAGTGGAGCCACAGGAGACCAGCATCGACCACTTACCCAGCCTTGTCACACAGAAGACATGCGATGACAGCACGATCCACTggttgtacatacatacatacatgcatacatacgtCAATAcggaaatgtttattttttacttacgTTAATGTTAGCGAAGGAAATCCAGTTTTGTTTccgttttgtttatttttaatattaatattattaatatgactATTATTTTGCCTTGCAGTTCAGTAGGATATTTGCACTTttacagaaaagagaaaattgtATGAATGTCTtaggttatttttttaacttttctgtGAATGTTCTGTCATTTCTGTATCCTGTAGCTCAGTGTATTTACCATGACTccattgtatgtatataaatatatactcatACGTgcctatatacacatatagtcatatgattatatatgtgtgtatgtgtgtatatgtggaTAATGTATACATaggtataaatatatttacatccTGTTGCTACTGACTGACACGCTGGGGGGGTTATGGCTGGTTGTGTGGGTTTGTTGGCGACGGTGTGTGTTCAGTCCTCCTCTCTGTgattcctctcccagtctgatTCTTGCTGCACTTACTTCTGGCTGAAGGaacacaatggaaaataaaaactaaacaaaacgaCAACCCCCGACCCGTTGTGCTCCTGC

Function

GO: NA

KEGG:

id description
ko04064 NF-kappa B signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
TU73635 True 2264 lncRNA 0.47 1 45337155 45339418

Neighbor

gene id symbol gene type direction distance location
AMCG00009744 NA coding downstream 18827 45315275 ~ 45318328 (-)
AMCG00009746 LOC105912249 coding downstream 31782 45287018 ~ 45305373 (-)
AMCG00009747 cdk20,LOC107727427 coding downstream 54135 45281202 ~ 45283020 (-)
AMCG00009741 NA coding downstream 67543 45267403 ~ 45269612 (-)
AMCG00009740 NA coding downstream 90211 45245712 ~ 45246944 (-)
AMCG00009745 mecp2,LOC105898998 coding upstream 6563 45345981 ~ 45351180 (-)
AMCG00009754 NA coding upstream 57771 45397189 ~ 45402415 (-)
AMCG00009756 NA coding upstream 118394 45457812 ~ 45458370 (-)
AMCG00009767 NA coding upstream 338823 45678241 ~ 45678855 (-)
AMCG00009771 smc1a coding upstream 344142 45683560 ~ 45695262 (-)
G58901 NA non-coding downstream 271 45332215 ~ 45336884 (-)
G58808 NA non-coding downstream 87135 45184361 ~ 45250020 (-)
G58807 NA non-coding downstream 95222 45219629 ~ 45241933 (-)
G58761 NA non-coding downstream 217931 45090217 ~ 45119224 (-)
G58724 NA non-coding downstream 336921 44998032 ~ 45000234 (-)
G58903 NA non-coding upstream 82 45339500 ~ 45345259 (-)
G58904 NA non-coding upstream 33340 45372758 ~ 45373072 (-)
G58940 NA non-coding upstream 134117 45473535 ~ 45554714 (-)
G58979 NA non-coding upstream 243088 45582506 ~ 45583007 (-)
G58978 NA non-coding upstream 245385 45584803 ~ 45585371 (-)
AMCG00009748 NA other downstream 11100 45320757 ~ 45326055 (-)
AMCG00009742 NA other downstream 59558 45251637 ~ 45277597 (-)
AMCG00009739 NA other downstream 106698 45168941 ~ 45230457 (-)
G58653 NA other downstream 552021 44782918 ~ 44785134 (-)
G58589 NA other downstream 770321 44566069 ~ 44566834 (-)
AMCG00009755 NA other upstream 119325 45458743 ~ 45465377 (-)
AMCG00009766 srpk3,LOC107601770,LOC107674354 other upstream 298329 45637747 ~ 45642744 (-)
AMCG00009769 phf8,LOC107563633,LOC106567021,LOC107716077 other upstream 409258 45748676 ~ 45757951 (-)

Expression


Co-expression Network