G53255


Basic Information

Item Value
gene id G53255
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 17638161 ~ 17638374 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU66641
TgcactgtaaaaaatgaaattaccaTTTGTCCAGCATACTGTGCTTTTGAGTCACATATATTAGGAATTGTGAATAACTGTGAAtctacataaaaatacatgttagtCCAAGTTTTCTAGacaaacatttttatgttgaaCAGGAATGGTAAGATCTGAATAGTTTGCGCATGCGTGATGAGCCAGAAAATTGCGCCGAATGCACAGGGTTTCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU66641 True 214 lncRNA 0.36 1 17638161 17638374

Neighbor

gene id symbol gene type direction distance location
AMCG00008997 NA coding upstream 37143 17492481 ~ 17601018 (+)
AMCG00008996 NA coding upstream 184944 17423446 ~ 17453217 (+)
AMCG00008993 NA coding upstream 476620 17161085 ~ 17161541 (+)
AMCG00008990 NA coding upstream 795443 16799599 ~ 16842718 (+)
AMCG00008991 NA coding upstream 839632 16798074 ~ 16798529 (+)
AMCG00009003 NA coding downstream 150146 17788520 ~ 17796297 (+)
AMCG00009005 NA coding downstream 181226 17819600 ~ 17829383 (+)
AMCG00009004 med25,LOC106601541,LOC106601511 coding downstream 193569 17831943 ~ 17845668 (+)
AMCG00009002 LOC103358380 coding downstream 225435 17863809 ~ 17868958 (+)
AMCG00009007 NA coding downstream 260704 17899078 ~ 17915696 (+)
G53254 NA non-coding upstream 9846 17626898 ~ 17628315 (+)
G53224 NA non-coding upstream 24545 17527478 ~ 17613616 (+)
G53223 NA non-coding upstream 110728 17527219 ~ 17527433 (+)
G53180 NA non-coding upstream 316939 17320970 ~ 17321222 (+)
G53178 NA non-coding upstream 319651 17318291 ~ 17318510 (+)
G53290 NA non-coding downstream 36240 17674614 ~ 17685760 (+)
G53288 NA non-coding downstream 94240 17732614 ~ 17734816 (+)
G53299 NA non-coding downstream 98216 17736590 ~ 17736924 (+)
G53300 NA non-coding downstream 102170 17740544 ~ 17746936 (+)
G53352 NA non-coding downstream 230622 17868996 ~ 17870467 (+)
AMCG00008995 NA other upstream 294485 17330892 ~ 17343676 (+)
AMCG00008986 shank1,LOC108427331 other upstream 887363 16746687 ~ 16750798 (+)
AMCG00008988 shank1,LOC108427331,LOC103392692 other upstream 900662 16731389 ~ 16737499 (+)
AMCG00008985 NA other upstream 911866 16679825 ~ 16726295 (+)
G53028 NA other upstream 964619 16672503 ~ 16673542 (+)
G53298 mybpc2 other downstream 90992 17729366 ~ 17730660 (+)
AMCG00009009 NA other downstream 279174 17917548 ~ 17920592 (+)
G53520 NA other downstream 912398 18550772 ~ 18553960 (+)
AMCG00009022 dnajc19,LOC107727073 other downstream 1889523 19527897 ~ 19547507 (+)
AMCG00009033 nlgn1,LOC103399994,LOC102210587,LOC102311540 other downstream 2738421 20376795 ~ 20396356 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G20571 NA non-coding CI01000001 null 12245936 ~ 12257734 (-)