G53300


Basic Information

Item Value
gene id G53300
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 17740544 ~ 17746936 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU66689
GTTTTTCCCTGGTCAGCAGGAGtctCATCTTCAGGCAATTCAGCATCAtgctctgctgGGGCTGCTTCCTGTTTCTTCTCTTCTGGTGGAGGGGCTGCTTCCTCTTTCTTCTCAGCAGAGGCTGTTGCCTTCTTGCCCTTCTTAGGCACTGCTTTCTTGGCCTCAGGcatgtctgtccgtctgtctgtgtctgtctctctctctgtcgctctCCCTCTGTCCTTGTGTCTGCGAGACTGTTTGCACGAAATAAGAACACTCTCGTTtattctctctcgc

Function

GO:

id name namespace
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:1990351 transporter complex cellular_component
GO:0034702 ion channel complex cellular_component
GO:0034703 cation channel complex cellular_component
GO:0034704 calcium channel complex cellular_component
GO:0005891 voltage-gated calcium channel complex cellular_component
GO:1902495 transmembrane transporter complex cellular_component

KEGG:

id description
ko04020 Calcium signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
TU66689 True 279 lncRNA 0.52 6 17740544 17746936

Neighbor

gene id symbol gene type direction distance location
AMCG00008997 NA coding upstream 139526 17492481 ~ 17601018 (+)
AMCG00008996 NA coding upstream 287327 17423446 ~ 17453217 (+)
AMCG00008993 NA coding upstream 579003 17161085 ~ 17161541 (+)
AMCG00008990 NA coding upstream 897826 16799599 ~ 16842718 (+)
AMCG00008991 NA coding upstream 942015 16798074 ~ 16798529 (+)
AMCG00009003 NA coding downstream 41584 17788520 ~ 17796297 (+)
AMCG00009005 NA coding downstream 72664 17819600 ~ 17829383 (+)
AMCG00009004 med25,LOC106601541,LOC106601511 coding downstream 85007 17831943 ~ 17845668 (+)
AMCG00009002 LOC103358380 coding downstream 116873 17863809 ~ 17868958 (+)
AMCG00009007 NA coding downstream 152142 17899078 ~ 17915696 (+)
G53299 NA non-coding upstream 3620 17736590 ~ 17736924 (+)
G53288 NA non-coding upstream 5728 17732614 ~ 17734816 (+)
G53290 NA non-coding upstream 54784 17674614 ~ 17685760 (+)
G53255 NA non-coding upstream 102170 17638161 ~ 17638374 (+)
G53254 NA non-coding upstream 112229 17626898 ~ 17628315 (+)
G53352 NA non-coding downstream 122060 17868996 ~ 17870467 (+)
G53354 NA non-coding downstream 123571 17870507 ~ 17871066 (+)
G53353 NA non-coding downstream 124493 17871429 ~ 17872667 (+)
G53358 NA non-coding downstream 125866 17872802 ~ 17874655 (+)
G53366 NA non-coding downstream 137545 17884481 ~ 17884687 (+)
G53298 mybpc2 other upstream 9884 17729366 ~ 17730660 (+)
AMCG00008995 NA other upstream 396868 17330892 ~ 17343676 (+)
AMCG00008986 shank1,LOC108427331 other upstream 989746 16746687 ~ 16750798 (+)
AMCG00008988 shank1,LOC108427331,LOC103392692 other upstream 1003045 16731389 ~ 16737499 (+)
AMCG00008985 NA other upstream 1014249 16679825 ~ 16726295 (+)
AMCG00009009 NA other downstream 170612 17917548 ~ 17920592 (+)
G53520 NA other downstream 803836 18550772 ~ 18553960 (+)
AMCG00009022 dnajc19,LOC107727073 other downstream 1780961 19527897 ~ 19547507 (+)
AMCG00009033 nlgn1,LOC103399994,LOC102210587,LOC102311540 other downstream 2629859 20376795 ~ 20396356 (+)
G53911 NA other downstream 3421295 21168231 ~ 21168575 (+)

Expression


Co-expression Network