G53458 (eif4a2,LOC105889495,LOC107656867,LOC107568626,LOC108267852)


Basic Information

Item Value
gene id G53458
gene name eif4a2,LOC105889495,LOC107656867,LOC107568626,LOC108267852
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 18401505 ~ 18402219 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU66878
CCTACTTTTTTTGGACACCATCCAAATATGCTGCCTTGGTCTAGAGCACTGCAATCTAGGGTTCTATGGTTATGCCCTCAGGTGCAGCATACCTGTTGTGCCAGCTCTCTGGTGGGAGCTAGCACCAGAGCCTGGGTCTCCTTCTGATCGAtctccagctgctgcaggatAGAGATGGCAAATGTGGCTGTCTTGCCAGTTCCTGACTGGGCCTGAGCAATGACATCATAGCCTTTAATACATGGAATGATGGCTCTTTGCTGAATGGCTGATGGCTTCTCAAAACCATAAGCATAGATACCACGAAGGAGAGTCTCCTTCAAGTTCATGTCATCAAAGTTGTCAACAATCTCGTTCCAGTTGCTCTCAATGACACCATCAGGCTCCATTCCTTCC

Function

symbol description
eif4a2 Predicted to enable translation initiation factor activity. Predicted to be involved in cytoplasmic translational initiation. Predicted to act upstream of or within translational initiation. Is expressed in several structures, including alar plate midbrain region; head; immature eye; midbrain; and segmental plate. Orthologous to human EIF4A2 (eukaryotic translation initiation factor 4A2).

NR:

description
PREDICTED: eukaryotic initiation factor 4A-II

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU66878 True 396 lncRNA 0.48 3 18401505 18402219

Neighbor

gene id symbol gene type direction distance location
AMCG00009016 rfc4,LOC103355474 coding upstream 27237 18361526 ~ 18374268 (+)
AMCG00009014 NA coding upstream 181252 18219072 ~ 18220253 (+)
AMCG00009006 ect2,LOC107593151 coding upstream 360544 18036794 ~ 18040961 (+)
AMCG00009008 NA coding upstream 379186 18013706 ~ 18022319 (+)
AMCG00009010 NA coding upstream 396764 17976034 ~ 18004741 (+)
AMCG00009026 LOC107550661,LOC107566880 coding downstream 1459059 19861278 ~ 19915906 (+)
AMCG00009025 atp11b coding downstream 1536857 19939076 ~ 19949435 (+)
AMCG00009032 NA coding downstream 1860856 20263075 ~ 20263866 (+)
AMCG00009034 nlgn1 coding downstream 2054238 20456457 ~ 20461014 (+)
AMCG00009035 nlgn1,LOC106584306 coding downstream 2283926 20686145 ~ 20692387 (+)
G53456 NA non-coding upstream 663 18399362 ~ 18400842 (+)
G53451 LOC100846954 non-coding upstream 2698 18359423 ~ 18398807 (+)
G53454 NA non-coding upstream 12081 18388399 ~ 18389424 (+)
G53415 NA non-coding upstream 301858 18099016 ~ 18099647 (+)
G53414 NA non-coding upstream 302954 18096230 ~ 18098551 (+)
G53493 NA non-coding downstream 6707 18408926 ~ 18410130 (+)
G53495 NA non-coding downstream 18633 18420852 ~ 18472277 (+)
G53496 NA non-coding downstream 25446 18427665 ~ 18429953 (+)
G53517 NA non-coding downstream 126124 18528343 ~ 18536374 (+)
G53519 NA non-coding downstream 152740 18554959 ~ 18584509 (+)
AMCG00009009 NA other upstream 480913 17917548 ~ 17920592 (+)
G53298 mybpc2 other upstream 670845 17729366 ~ 17730660 (+)
AMCG00008995 NA other upstream 1057829 17330892 ~ 17343676 (+)
AMCG00008986 shank1,LOC108427331 other upstream 1650707 16746687 ~ 16750798 (+)
AMCG00008988 shank1,LOC108427331,LOC103392692 other upstream 1664006 16731389 ~ 16737499 (+)
G53520 NA other downstream 148553 18550772 ~ 18553960 (+)
AMCG00009022 dnajc19,LOC107727073 other downstream 1125678 19527897 ~ 19547507 (+)
AMCG00009033 nlgn1,LOC103399994,LOC102210587,LOC102311540 other downstream 1974576 20376795 ~ 20396356 (+)
G53911 NA other downstream 2766012 21168231 ~ 21168575 (+)
G53915 NA other downstream 2872392 21274611 ~ 21275354 (+)

Expression


Co-expression Network