G53495


Basic Information

Item Value
gene id G53495
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 18420852 ~ 18472277 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU66923
caaggttggggctgcatttctgctaatggagttggggatttggtcagaatgaattgTCTCCTCAAtgttgagaagNNNNggcagatacttatccatcatgcaataccatcaaggaggcatctgattggccccatgacaatgaccccaaacatacagtgaaagtcatgaAGAACTATCTTCAACgtgaagaacaaggagtcctggaagtgatggtatggcccccacagagcccatatctcaacatcgagtctgtctgggattacatgaacaGAGataagcaactgaggctgcctaaatccacagaagaactgtgcttagttctccaagatgtttgggctaacctacctgccaagttccttcaaaaactgtgtgcaagtgtatctagaagaattgaaggcaaagggtgttcacaccaaatattgatttgatgtagattttcctTCCGtttactcactttgcattttgttaattgataaatataatctaataacaTTAATAGCATTTCTTctcacctgcctaaaacgtttgcacagtactgtgtgtatatacagctctggaaaaaaattaagagaccactccaacttcagaatgttaagtggtctaaattttttccagagctatatatatatatatatatatatatatatatatatatatatatatatacatacacacacatctttctGCTACAATTCTCTGCAGTAAGTGGAGTCTATTTGTGTATGTCTGGCCTCTGTACATGCATCAATTAATAAcactacaaataatataaaaacaaacaaacaaaaaaaaatgggcATTTGTTTCAGTACCAGGAAGAATGAAATATTCTCTCATCTTTTCCTCACCTCTCCCTGTCCTTTCACTTGAGCTGCTGCTTTCTCTTTctaaaaaatatctaaaagtAAAGTTACAAAACACCCCCAAAGAAAGTGGAATTGAAGTTTGAGTTTAGACCCTGATCTGTGTATTATTGTTGAAAAAGTTTGAACCTAAGCACctattaaaagttaaaaaaaaaaaaaaaaaaaaaaaacatatataagcaGGAATTTCTTTTGGCATTGaattttcctaatttcttaattattaattatgatttttttcccttGCTACCTTGTTCAAATCTCTCACACATACTCACTCAGCACTGTCACTATTCCACTTGCTgtattgacagttttttttaccCCTGCCCTTCCCCAAACTCCCCCCCAACTGGTGCATTTAAACtattagtaaaataattataatattaataaaactcaAATCACTGACAACTCAAATCAAGTTTACAGACTCAACACTTGAGTGTGGAAAAAACAGGTCAAAAGGCTGAAGATaattataccaaaaaaaaaaaaaaaaaagtacattgtaTCTTTAGACTAATAATGAACCTGTAATGTTATCTATGTCCTGCACAGTACCATCTCTGCTGGTTTGCCCTGTTATTAAATATAGTGCACCTATTCACCACTGCCATCTCCTGCTTCTTTGACACTAGCCTCCTCTATCGATCCAATGCAGGTTCCAACCCAGTTGTCCAGTACAGTGGGAGAGTGCAGCCAGGCAGGTCTGCATTTACGTACTTATGTATACATTAAGTGGGTCAGATCTCCAGTCACGGCAGGAAATATGCAGTGCGCAATGTGTGCGTCTCACCAACTGTGAATCTCTATATTTGTGTCTCACTCCCACACTCCGATTCCAACAAGTATGAGATAACGAGAATATTCTTAATTGTTGTAACCATGATAATGCAATTTAGGTTTGCAGAATGACTGAGGAAGTATAACACTGGGGGCTTAATGTCACACACTCACCCATCCAGACGCTCAAACACTTTCTCGCACACTCACGCAGTCTCTTGTACATACTCACATGTGTACACACTGGCACTCAATCTGTCATTCTCGCATGCACAGGCACACTCACACTCAGGTACActcatatacaaacacacacacacacacacacacactctgcagtATCTCTGTGCTGTTGAACTCAGTGAGGACACATTGTTTCCATGGTGATCCAAAGGCTATAGAAAGTGGCTGCCCATAAAGGATAAGGAGCTGGTGGAGTGGGGAGCTCAGCTCAGCAACAGTCTCCAGGGAGTGGAGGCCATATTTCCATAGCTACAACAGCACACAGGGGCAGGATTTTGACTGGCGTTTCCGTGTCTGGtgggagggggtgggt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU66923 True 2208 lncRNA 0.39 2 18420852 18472277

Neighbor

gene id symbol gene type direction distance location
AMCG00009016 rfc4,LOC103355474 coding upstream 46584 18361526 ~ 18374268 (+)
AMCG00009014 NA coding upstream 200599 18219072 ~ 18220253 (+)
AMCG00009006 ect2,LOC107593151 coding upstream 379891 18036794 ~ 18040961 (+)
AMCG00009008 NA coding upstream 398533 18013706 ~ 18022319 (+)
AMCG00009010 NA coding upstream 416111 17976034 ~ 18004741 (+)
AMCG00009026 LOC107550661,LOC107566880 coding downstream 1389001 19861278 ~ 19915906 (+)
AMCG00009025 atp11b coding downstream 1466799 19939076 ~ 19949435 (+)
AMCG00009032 NA coding downstream 1790798 20263075 ~ 20263866 (+)
AMCG00009034 nlgn1 coding downstream 1984180 20456457 ~ 20461014 (+)
AMCG00009035 nlgn1,LOC106584306 coding downstream 2213868 20686145 ~ 20692387 (+)
G53493 NA non-coding upstream 10722 18408926 ~ 18410130 (+)
G53458 eif4a2,LOC105889495,LOC107656867,LOC107568626,LOC108267852 non-coding upstream 18633 18401505 ~ 18402219 (+)
G53456 NA non-coding upstream 20010 18399362 ~ 18400842 (+)
G53451 LOC100846954 non-coding upstream 22045 18359423 ~ 18398807 (+)
G53454 NA non-coding upstream 31428 18388399 ~ 18389424 (+)
G53517 NA non-coding downstream 56066 18528343 ~ 18536374 (+)
G53519 NA non-coding downstream 82682 18554959 ~ 18584509 (+)
G53524 NA non-coding downstream 120775 18593052 ~ 18593516 (+)
G53542 NA non-coding downstream 129452 18601729 ~ 18601952 (+)
G53567 NA non-coding downstream 249831 18722108 ~ 18722401 (+)
AMCG00009009 NA other upstream 500260 17917548 ~ 17920592 (+)
G53298 mybpc2 other upstream 690192 17729366 ~ 17730660 (+)
AMCG00008995 NA other upstream 1077176 17330892 ~ 17343676 (+)
AMCG00008986 shank1,LOC108427331 other upstream 1670054 16746687 ~ 16750798 (+)
AMCG00008988 shank1,LOC108427331,LOC103392692 other upstream 1683353 16731389 ~ 16737499 (+)
G53520 NA other downstream 78495 18550772 ~ 18553960 (+)
AMCG00009022 dnajc19,LOC107727073 other downstream 1055620 19527897 ~ 19547507 (+)
AMCG00009033 nlgn1,LOC103399994,LOC102210587,LOC102311540 other downstream 1904518 20376795 ~ 20396356 (+)
G53911 NA other downstream 2695954 21168231 ~ 21168575 (+)
G53915 NA other downstream 2802334 21274611 ~ 21275354 (+)

Expression


Co-expression Network