AMCG00010435 (rorb,LOC107744430,LOC107599920,LOC107730723)


Basic Information

Item Value
gene id AMCG00010435
gene name rorb,LOC107744430,LOC107599920,LOC107730723
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 29563334 ~ 29571390 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010435
CAAATTGAAGTTATACCATGCAAAATCTGTGGAGATAAATCATCAGGAATTCATTATGGGGTCATCACATGTGAAGGCTGTAAGGGATTCTTTCGAAGGAGCCAACAGAACAACGCCTCCTATTCCTGCCCTCGACAGAGAAACTGCCTAATTGACAGAACAAACCGAAATCGATGCCAGCACTGCCGACTACAGAAGTGTCTTGCCCTTGGAATGTCTCGAGATGCGGTGAAGTTTGGGAGGATGTCCAAGAAGCAGCGAGACAGCCTGTACGCTGAAGTGCAGAAGCACCAGCAGAGGCTACAGGAACAGCGGCAGCAGCAGAACGGAGAAGCAGAGGCGCTGGCCCGTGTCTACACCAGCAGCATCAGCAACGGCCTCAGCAACCTCAACAACGAGATCGGGGGAACGTACTCCAACGGACACATAATCGACCTGCCAAAAACGGAAGGGGCTAATGGGTTCTACAGCATGGACTCCACTCAGCCTTCTCCCGATCAGTCAGGGATAGACATGACCGGGATCAAGCAAATCAAGCAGGAGCCTATTTATGACCTGACGCCTGTACCGAACTTGTTTACATACAGCTCTTTTACAGATGGGCAGCTAGCTCCCGGGGTGACAATGACTGAGTTAGATCGAATTGCACAGAATATTATAAAGTCCCATCTGGAGACATGTCAATACACTGTGGAGGAGTTGCAGCAATTGGCATGGCAGACCCACAcatatgaagaaattaaaatgtatcagaatAAGACGCGTGAAGTCTTGTGGCAGCAGTGTGCAATCCAGATCACACATGCCATACAATATGTGGTTGAATTTGCCAAGCGGATAACTGGGTTTATGGAGTTGTGTCAGAATGACCAAATTCTTCTCCTTAAATCAGgttGTCTTGAAGTTGTATTGGTGAGAATGTGCCGTGCCTTCAACCCACTGAACAACACTGTGCTTTTTGAGGGAAAATATGGAGGGATGCAGATGTTCAAAGCCCTAGGGTCTGAGGATCTAGTAAGTGCAGCCTTTGACTTTGCCAAAAGTCTGTGCTCCCTTCAGCTCACAGAGGAAGAGATTGCTTTATTTTCAGCAGCAGTCCTGATATCAACTGACCGTCCATGGCTGATGGAACCCAGGAAAGTGCAGAAGCTACAGGAGAAAATTTACTTTGCACTACAACATGTGATGCAGAAGAACCACTTGGATGAAGACTCCCTGGCAAAACTGATTGCCAGAATCCCTACATTATCAGCACTTTGTACCCTGCATACAGAGGAATTACAGGCATTTAAGCAGTTACACCCAGAAACTGTCAACATGCTCTTTCCTCCATTGTATAAAGAGCTTTTCAATCCAGACTCGGCAACAGGGCCCAAG

Function

symbol description
rorb Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and nuclear receptor activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in alar plate midbrain region; immature eye; and nervous system. Human ortholog(s) of this gene implicated in idiopathic generalized epilepsy 15. Orthologous to human RORB (RAR related orphan receptor B).

NR:

description
nuclear receptor ROR-beta

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0004879 nuclear receptor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08533 NR1F2, RORB; RAR-related orphan receptor beta

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010435 True 1377 mRNA 0.47 9 29563334 29571390

Neighbor

gene id symbol gene type direction distance location
AMCG00010436 LOC107557575 coding downstream 68902 29484081 ~ 29494432 (-)
AMCG00010428 pcsk5 coding downstream 124738 29432797 ~ 29438596 (-)
AMCG00010426 pcsk5 coding downstream 147339 29409172 ~ 29415995 (-)
AMCG00010429 pcsk5,LOC106580081 coding downstream 169448 29350694 ~ 29393886 (-)
AMCG00010427 NA coding downstream 218188 29322334 ~ 29345146 (-)
AMCG00010439 NA coding upstream 197036 29768426 ~ 29775791 (-)
AMCG00010438 NA coding upstream 254517 29825907 ~ 29832546 (-)
AMCG00010444 NA coding upstream 267786 29839176 ~ 29914364 (-)
AMCG00010443 NA coding upstream 365964 29937354 ~ 29948993 (-)
AMCG00010452 LOC107734934 coding upstream 700296 30271686 ~ 30284636 (-)
G80609 NA non-coding downstream 49920 29510920 ~ 29513414 (-)
G80608 NA non-coding downstream 56774 29506154 ~ 29506560 (-)
G80592 NA non-coding downstream 247475 29314958 ~ 29315859 (-)
G80566 NA non-coding downstream 266264 29292499 ~ 29297070 (-)
G80538 NA non-coding downstream 492836 29068455 ~ 29070498 (-)
G80709 NA non-coding upstream 428439 29999829 ~ 30021876 (-)
G80725 NA non-coding upstream 532019 30103409 ~ 30103647 (-)
G80778 NA non-coding upstream 653535 30224925 ~ 30271665 (-)
G80777 NA non-coding upstream 682405 30253795 ~ 30259308 (-)
G80786 NA non-coding upstream 775075 30346465 ~ 30385247 (-)
AMCG00010371 NA other downstream 3136676 26412210 ~ 26426658 (-)
AMCG00010364 inip,LOC107658659,LOC107558675,LOC107571239 other downstream 3183587 26367932 ~ 26379747 (-)
AMCG00010343 hook3 other downstream 4007254 25516064 ~ 25556080 (-)
G79601 NA other downstream 6198387 23359643 ~ 23364947 (-)
AMCG00010288 NA other downstream 6476989 23082655 ~ 23086345 (-)
AMCG00010442 LOC107672760,LOC107738293,LOC107592320 other upstream 381300 29952690 ~ 29961324 (-)
AMCG00010458 LOC107396140 other upstream 939580 30510970 ~ 30520381 (-)
AMCG00010478 znf367,LOC107568105,LOC107704585 other upstream 1501062 31072452 ~ 31080322 (-)
AMCG00010487 ppip5k2 other upstream 2382980 31954370 ~ 31997694 (-)
AMCG00010509 fem1c,LOC106580179 other upstream 3421897 32993287 ~ 32999999 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_031071 rorb coding NC_007116.7 CM002889.2 25366677 ~ 25406807 (-)