AMCG00011300 (LOC105025958)


Basic Information

Item Value
gene id AMCG00011300
gene name LOC105025958
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 17295543 ~ 17307824 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011300
CAAGCAACCCGGCCTGATGCAAGTACTTCTTCACCAGCCCCCACCAAGCCCAGTGGTCCGGCCCACAAGATCTGTCTGGTCTGCTCAGATGAAGCTTCAGGATGTCACTATGGCGTCCTGACCTGCGGCAGCTGTAAAGTCTTCTTCAAGAGAGCAGTCGAAGGGCAACACAACTATTTATGTGCAGGGAGAAATGACTGCATCATAGACAAGATCCGCAGGAAGAACTGCCCAGCATGCCGCTTTCGCAAATGTCTGCAAGCAGGAATGAATCTGGaagCGAGAAAAACCAAGAAGCTGAACAGATTAAAGGGAGTTCAGCCAGTCATTGAGTCACCAGTCGCCCTGCCCGACGAGCGAGCGCGAGCCCTGATTCCCAAGTCGATGCCACAGCTAGTGCCCACCATGCTGTCCCTCCTGAAAGCCATCGAGCCAGAAATAATCTACTCGGGATACGACAGCACCGTCCCAGACAACTCCACACGGCTCATGACCACACTCAACAGGCTCGGAGGAAGACAAGTCATCTCTTCTGTGAAATGGGCAAAGGCACTCCCAGGGTTTAGAAACCTGCATCTTGATGACCAAATGACTCTGCTGCAGTGCTCCTGGATGGTCCTCATGTCCTTTGGGCTGGGCTGGAGGTCCTTCCAGCAGTCCAATGGCAGCATGCTGTGCTTTGCACCAGACCTGGTGATTAATGAagagagaatgaaatTACCATATATGAATGAACAGTGCGAACAAATGCTGAAGATTTCCAATGAGTTTGTGCGGCTGCAGGTTTCCTACGATGAGTATCTCTGCATGAAAGTCCTACTGCTGCTGAGTACTGTCCCCAAGGAAGGGCTGAAGAGTCAGAGTGTCTTCGATGAGATTCGGATGTCATACATTAAGGAGTTGGGAAAGGCGATCGTCAAACGAGAAGAGAACTCCAGCCAAAACTGGCAGAGGTTTTACCAGCTGACAAAGCTCTTGGACTCCATGCATGAGTTGGTGGGTGGACTTATAAATTTCTGCTTCTACACCTTTCTGAACAAATCATTGAGCGTGGAGTTTCCAGAGATGCTGGCAGAAATTATCAGCAACCAGTTACCAAAATTCAAAACCGGTAGCATGAAGCCACTTCTCTTTCATCAAAAG

Function

NR:

description
PREDICTED: glucocorticoid receptor

GO: NA

KEGG:

id description
K05771 NR3C1, GR; glucocorticoid receptor

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011300 True 1143 mRNA 0.50 7 17295543 17307824

Neighbor

gene id symbol gene type direction distance location
AMCG00011302 NA coding upstream 34326 17260015 ~ 17261217 (+)
AMCG00011298 yipf5,LOC107713174,LOC102777143 coding upstream 73024 17219688 ~ 17222519 (+)
AMCG00011296 NA coding upstream 276237 17009308 ~ 17019306 (+)
AMCG00011295 NA coding upstream 287257 17006454 ~ 17008286 (+)
AMCG00011288 lars,LOC102775971 coding upstream 318083 16962316 ~ 16977460 (+)
AMCG00011309 NA coding downstream 109771 17417595 ~ 17426498 (+)
AMCG00011307 rasgef1c,LOC102777120 coding downstream 236941 17544765 ~ 17556370 (+)
AMCG00011308 LOC108441031 coding downstream 255761 17563585 ~ 17568228 (+)
AMCG00011312 NA coding downstream 263301 17571125 ~ 17579716 (+)
AMCG00011310 gblp,LOC108268614,LOC107599381,LOC103033914,LOC108441034 coding downstream 437838 17745662 ~ 17750420 (+)
G105538 NA non-coding upstream 570390 16724688 ~ 16725153 (+)
G105466 NA non-coding upstream 1095244 16200049 ~ 16200299 (+)
G105448 NA non-coding upstream 1162556 16132758 ~ 16132987 (+)
G105438 NA non-coding upstream 1228101 16067233 ~ 16067442 (+)
G105436 NA non-coding upstream 1231794 16062914 ~ 16063749 (+)
G105684 NA non-coding downstream 1935 17309759 ~ 17312068 (+)
G105715 NA non-coding downstream 70796 17378620 ~ 17378860 (+)
G105756 NA non-coding downstream 427166 17734990 ~ 17742387 (+)
G105769 NA non-coding downstream 443426 17751250 ~ 17751484 (+)
G105776 phykpl,LOC100691570 non-coding downstream 458067 17765891 ~ 17768221 (+)
AMCG00011293 plac8l1 other upstream 313302 16978492 ~ 16982241 (+)
AMCG00011268 NA other upstream 1185162 16105586 ~ 16110381 (+)
G105373 cssa04h5orf24,pcbd2,LOC105890513,LOC100699409 other upstream 1311464 15963340 ~ 15984079 (+)
AMCG00011255 LOC106603967,LOC105011194,LOC108410970 other upstream 1422054 15863032 ~ 15873489 (+)
AMCG00011252 NA other upstream 1439759 15853764 ~ 15855784 (+)
G105778 LOC105024433,LOC107752029,LOC107743918,LOC106604409 other downstream 476339 17784163 ~ 17788050 (+)
AMCG00011328 NA other downstream 1799449 19107273 ~ 19117369 (+)
G105916 NA other downstream 1914231 19222055 ~ 19222421 (+)
G106139 LOC108275110 other downstream 2787405 20095229 ~ 20162966 (+)
AMCG00011365 LOC108438827,LOC108243066,LOC107376386 other downstream 2988187 20296011 ~ 20339325 (+)

Expression


Co-expression Network