AMCG00011365 (LOC108438827,LOC108243066,LOC107376386)


Basic Information

Item Value
gene id AMCG00011365
gene name LOC108438827,LOC108243066,LOC107376386
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 20296011 ~ 20339325 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011365
TTCAGTGCTGGGAAGTGCGTGTGAAGCGCAATGGAGTTGCGCTTCTCTGCTTTGGTTTGTACAAGTAGGGCATCATGAAGCTTTCTACCTTCCCGGCGGCGGGTTTCTGTGTAGGCTAGGGCAGGGGCTTTGAGCGGACCCATGGATTTACTACCCTAGCGCTGTTTCTGTGGGGATCTGCGGACTTTTCGCGATGGCAGGCAGGACAGCGGAGCGGGCTGGGCTCTGGCCGGCGCTGTGTCTCTCGCTGTCCGTGGCGTGGACGTGCGCGTCCGCCGAGCTCATCTATTCCGTCTCGGAGGAGTTAAAGCCGGGGGCCTTTGTTGGAAACGTGGCCAGGGATCTGGGGCTGGAGGTGGCGAGCATCGCCGAGAGAAAGCTGCAGGTCGTGTCGGACTCCAGCGCCCGCTATTTCGAGGTGAGCTGGGTGAGCGGCGCGCTGGTCATTAAGGAGAAGATTGACAGGGAACGCATCTGTGGATTAAGCCCGACGTGTCCCCTGCACCTCCAGCTGGTGCTGCACAACCCCCTGGAGCTGAGCCGGGTGCTGGTGGAGATCCTGGACGTGAACGACAACGCGCCCCAGTTTCCAGCGCAGAACATCTCGCTGGAGATCTCCGAAGCGGCCGCGCCGGGCACCCGATTCCGCCTGGACAGCGCGCAGGATCCGGACGTGGGAAGCAATTCGCTGCGCAACTACCTCCTGAGCCCCaatgactgttttattttaaacgtGGAAACGAAAAGCGATGGCAGTAAATTCCCCGAACTGGTGCTGGAGAAACCTCTGGACCGGGAGAAGCAACCGACATTCCGCCTCTTGCTCACCGCGACTGACGGGGGCACGCCGGAGAAATCGGGCACTACAGTCGTGCTGATTACAATACTGGATGTAAATGACAACGCACCGGTGTTTGATCATCCGGTGAAACGGGTAAGCTTGCTGGAAAATTCCCCGCCTGGTACATTAGTGACCAAACTGAATGCCACGGACATGGATTATGGCCTGAATGGTGAACTCGTGTATCTATTTAGCAAGTATACATCGGACGCAGTTCTGCAGCTTTTCAGTGTGGATGCCCAAACGGGCGAGATCCGAGTCAATGGCTTGGTTGATTACGAGGTGGCGACCATTTATGACATTACCGTACAGGCCAGAGACAAAGGCAGCCCGGCCATGGAGGGCTCTTGTAACATTAAAGTGGAAATCGCAGACGTGAATGATAACGCCCCGGAGATCATCATCACCTCTCTGTCCAGTCCGGTCCGGGAGGACGCAGCCTCGGACACTGTCATCGCCCTGATCCGGGTCCGAGACCACGACTCGGCTCACAATGGGGATGTGACTTTACAGATGCCTCCGGGGCTGCCATTTAAACTGAGCTCGTCTTTTAAAGAGCACTACACCCTGATCACTAGCGGCCCGCTGGATAGGGAGAAGGTGGCCGAGTATAGCATCGTGGTCACGGCCACCGACTCAGGGTCCCCTCGCCTGTCGTCTCAGATCACCATCCCCGTTAGTCTCTCAGATGTCAATGACAACCCGCCAGTGTTTTCACAGCCGTCTTACACCGTGGAGATCGCAGAGAACAATGCCCCTGGCTCTCACATTGCAACCGTGTCAGCCTCCGACCCAGACGTGGGCAGAAACTCCCAGCTGTCCTTCTCCATCTTGGAGAGCCGCGTCCAGGGCACATCTGTTTCGTCCTACGTCTACATTAACGCAGAGAACGGGAATGTTTACTCCATGCGCTCTCTGGACTATGAGCAGATGAATGCTTTCCAGATTGAAGTGCAGGTCCGAGACGCAGGGACGCCCCCGCTCACATCTAACGTGACAGTGCATGTGTTCGTGGTGGACGAAAATGACAACGACCCGGTCATCGTGTACCCCGTGTTTCCCAAGGACAGTGCCCTGCAGCTGAAGGTGCCCCAGTCTGCAGGGGCCGGGTACCTGATTAATAAGATAGTGGGTGTGGACGCGGACAGTGGCCACAACGCTTGGCTCTCCTACAGCATCCCCCCGGGCCAGGACCTCTTTCGAGTGGCCACCCACACCGGGGAGCTGAGAACTGCCCGGAAGTTgcaagaggaggagggagcCGTGTACGACCTTGTGATTGTGGTGAAAGACAATGGGACCCCCGTGCGCTCCACCACCGTGTCCGTCAGCATCTCGGTGGAGGAAAAGGGCTCCGACACTTCCTCTGAGTTTAGGAAGACACCTGCAAGGAAAGGAGGCATGTCAGACATCaccctttatttaattatctcaTTGGCCTGCATTTCGGCCATTTCCTTTTTGACTTTTGTGATCCTCATTGTGAAGTGCCTTAGACATAAAGGGGAATACAGCAGCAGCTGTCTGGATAGGTGCTGCCACAGCAGACACAGGCTGCGGTCCAGGCATGCTCAGAGGTCCCAGAAAAACCTCCACCTGCAGCTAAACACAGACGGGCCCATCAAGTACTTGGAGGTGGTGGGAGGTCCGCCCGAGAGTCATATTCCGGGTTACAGGCCGTACTATTCCACGCTGTCAAACAGAAGCGACTTTGTTTTCATCAAGAGCCCCTCTACACCCATGATGAGCAAAACCAACACCTTGAATATGTCTTTATCTCGAAAACACTTAATTAACACAGCCAATGAGCAAAAACCTGCCAACACTGACTGGCGTTTCTCCCAAGGACAGAGACCCGGACCCAGCGGAGCTCCCCAGCGTCCCGAAGAGGCCGGACCCTGGCCCAACCCCCCGACCGAGGCCGAGCAGCTGCAGGCGCTCATGGCAGCAGCTAATGAGGTGAGTGAAGCCACCAACACCCTGGGTGGGAGCAGTACCCTGGGACCCGGCACCATGGGCCTGAGCACCCGTTACAGCCCCCAGTTCACCCTGCAGCACGTCCCCGACTACAGGCAGAACATCTACATCCCCGGCAGCACGGCCACCCTGACCGGCAACAACGGCCAAGGCCAGGGCCCACCCCAGGGCCAGCCCCAGGCCCTGCCCCAGCCCCAGCCGCAGCAGCAGCCGCCGCAGCAGCCCCCCGCGGAAGCCCCCAAGCCTGCCCAGACCCCCGCCAACAAGAAGAAGTCTGCCAAGAAGGATAAGAAGTAAAGAGACCGGCCGGCGCagagcctgtgctgctgagggTCTCTGACGATGTCCACACCTGTATTGCCCCAAACGGAAACCCCCTCATTtcttttggttgtattttttttttcgttttgttggtttaatctGAATGTTACGAAGCTACAAAGTTGTTGTTGGTGACTTAAGGCATAAGCAGTGGgtttctgtttttggtttttgtaaGACTCCCCCATAGTGTATGTACCTTGTTATTTGAATATAACATGCAGTTATTTGGTAGAGGTATTATTCCTTAAGTTTTAAACTGGGGTATTCAAAAATTCGTTTGATCCCTTTGATGAATCCACATgggttttaaaactgtaaaataaaaatgaagaaatacatgGGGACTTATGGGCTTTGCCCTATAATGTAGAAATAGtataaatattaatcatttacaTATGCAGTGCGTCAAGTTATGGATTTTGTTTGACTGTTAAAATCGCAAAGTAGATGCTTCTCGTGGGAAAGGAATGACactattttgaattgaatttagGTTTCTTAGGAGAAAATCAGCTTTAAGAATCTCGCAGTAGCTCTTAGTCACGACGTAGACCGGTATTTGCATGATCCATTTCTTAACTAGAGAATTAAGCCACAGAAGGTAAACTATGCATTAAATAACAAGAAACAGTGTTCGACTGGTAAGAAGAGAACTAAAcagtatctttaaaataatgcatttgtagCATTGAACATACATAAATGACAGTTGCCTATAGTAATATAGtaagttaaaaacacaaataattttgtttgtttacatctaCATGCCATTTATGAGAAACACAATGTCAAGGTGATCTGAACGATAATCATCCTGCAGATATTATACAAGTGTTACATTCCATATAACTGTCTTAAACCGATTCCAAATAATGAAGCTACCACGGTCTCCACTGAAGAAGAAAGCTCAGTGTCATGGCCTTTCAGATAGGGGTAATGCCAATTGAAATGGGAGTTTACCACTGGTGTTGTCTCACTTTGGATCTGCTGGCAGAAACCTTGAAGATATAGGTTGTGTTGCTCTTGGATGGAACCATTATCTTACAATATAAGGCTTTGCATTTCCAGCAGTTAATTGCATGCATCTCGCCCGCATCACACCTTTGAAATGCACTAACACTGCTTCGCTTTACTAATGCTCAGCTATGCGTTGCATGTGACAGATACACTGCATGAAACGGCAGTTTCCATATTTAGTCCGAGCTGCAGGAACCTGGATTTTAGTCGACAGTGTGGGGGGAAGGCACGGGGCGGTCAGGGATATTTTAGTCTTTAAAAAACGAAAGGAGCAAAGATTAGGTTTGGGGCACTACTCGCTGAATGCGTCTCCTTTCAAGTTTGAGAAGGTATTTTCAGCTGATAATATGAGACAGAAGTTGTGCTCTTGGAGTCCCTCCTGACTGGGAGACAGGACAGAGATTTGGGGGGGGTGGTTATTGAAGGTAAAACTATTTTTCATTAAGGCACTAATCGATCGGGACCTGGACACTATTCGCGTTATTGCTTGTGATTCTGAGCTACGTACACTAGATGTAGGCAAGTTGCTTCTGATGTGTAAGATAAAtattatatagaaataaatacatatattttgttttatgcaatgtcaggtcaaagaaaacaaagggcaCTGTAGAGTAGAGAGAGATGGCTGTGAAAGGTCCAACGCGTGCAGCTGTGGCGCTCAAATGCTGGAGATTAGATTTGTTACTCAAGTCTCGATGCCTTACAGCTCTGCCGAACACACATTTACCAGTGCTAGAAGGCAAACATTGGGGGCCTGCTGGAATCTGTTAGGAGCGGAATATCTTATAGACATTCATCTGAAcgttaaatgtttttgttctttacagGTCAACAAATGTGACTTATAAGCGTACAGAGGGTCATTTGCACCCCTGCcaccttaaaatatataactaaattCATAAGCGTAGTAAACAATCCTGTTTGGTCTCTGATGTAGCCTCACGGTGAATCAAATCGCCCTTGCTGAGCCTGGAGTAGGTGAATTATACTCCGAAATTTGATTTGTCATAATAGCACGGATGCCTGGGGACTGCATCGCCATTTTGTGACTCATGGCCACTGTGTTTGCGTCATTTGCATTGGAAATTCAGGGAAGGCGGCAGAGCTGCCTTTCTGGCCAAAATCCTCGAGGTCTTTCACACCCCAACCAGACAAAGCACCAGTGACCGAGACAACAAGGTTATAAAAGCAAGACTGCAAGGGGAAACACCCGCACAGGCTCTGTattatgatttttgtgtgtgttttacatcaCAATTTCTACCTGCTTTTCCCAAAATTCATTCccattccttctttttttttttttcctcccgtGTAAATAAGACCAAATCGTGTCATTTGAGGACCAGCTGTCTGTATGGACCacttaaaaccataaaacaataatgaagcaaagaaataaaagccCCCAAGATGTGGCTACTACTggaatgttttgcatatttttcagaaaagagaaaaaaaaaaatgaaaaaaaaaaaatagttgtgTAGCAACTAAGCATTAGAGTCACTGACAAACGTGTAAATACAAGAAGGAAATCCACACAACAGTAGAGTAGAAACTTGTGACCGGTGTTGTgcatattttagtgttttttctgtattttatcaccaagtactaaaaaaaaaaataattcaaaagaaaaaaaaagtacaaaaaaaaaagattgtgttTCTAGCCATCTGTAactttttatatgtgtttgtgatttataaGTGTTTGTGCTGATGGAATGCTTTCCTGTCCCATTCAACTATATACATGTCTGCTGAAGAATTAAACTTCTATATTATACCTAAATATCTTTCTTATACATGCATAGATCAGTGCTTTTCTGTGTTACACCCATATTTTATATGctaatatttatattgctgttttattttctctttgaacactgacatttcaaataaaaatttCTTCTGAATTCATCACTTTGTCTCTGGCTTgggttttgtttattcaaaaaTGACTCCATTACAAATTGAATGGGGGGGTATTTCAATCTATTTAGAAAAAAAGGCTATTGTGAAGACTGGTTTGCTGCACTGAGCTTTGAAGAATAACGTTTAAATGTCAAACAAGAATATGACATTTTAAGATAAGGTATCAATTAATCTTAAATTCTATtctaaaaacaatgtttttcta
>TU132823
CTTGACGCCTCTTTACCCGACAACTCCTGGAGTTTTGAAAGTCAGCAGCAAAAACCTGCCAACACTGACTGGCGTTTCTCCCAAGGACAGAGACCCGGACCCAGCGGAGCTCCCCAGCGTCCCGAAGAGGCCGGACCCTGGCCCAACCCCCCGACCGAGGCCGAGCAGCTGCAGGCGCTCATGGCAGCAGCTAATGAGGTGAGTGAAGCCACCAACACCCTGGGTGGGAGCAGTACCCTGGGACCCGGCACCATGGGCCTGAGCACCCGTTACAGCCCCCAGTTCACCCTGCAGCACGTCCCCGACTACAGGCAGAACATCTACATCCCCGGCAGCACGGCCACCCTGACCGGCAACAACGGCCAAGGCCAGGGCCCACCCCAGGGCCAGCCCCAGGCCCTGCCCCAGCCCCAGCCGCAGCAGCAGCCGCCGCAGCAGCCCCCCGCGGAAGCCCCCAAGCCTGCCCAGACCCCCGCCAACAAGAAGAAGTCTGCCAAGAAGGATAAGAAGTAAAGAGACCGGCCGGCGCagagcctgtgctgctgagggTCTCTGACGATGTCCACACCTGTATTGCCCCAAACGGAAACCCCCTCATTtcttttggttgtattttttttttcgttttgttggtttaatctGAATGTTACGAAGCTACAAAGTTGTTGTTGGTGACTTAAGGCATAAGCAGTGGgtttctgtttttggtttttgtaaGACTCCCCCATAGTGTATGTACCTTGTTATTTGAATATAACATGCAGTTATTTGGTAGAGGTATTATTCCTTAAGTTTTAAACTGGGGTATTCAAAAATTCGTTTGATCCCTTTGATGAATCCACATgggttttaaaactgtaaaataaaaatgaagaaatacatgGGGACTTATGGGCTTTGCCCTATAATGTAGAAATAGtataaatattaatcatttacaTATGCAGTGCGTCAAGTTATGGATTTTGTTTGACTGTTAAAATCGCAAAGTAGATGCTTCTCGTGGGAAAGGAATGACactattttgaattgaatttagGTTTCTTAGGAGAAAATCAGCTTTAAGAATCTCGCAGTAGCTCTTAGTCACGACGTAGACCGGTATTTGCATGATCCATTTCTTAACTAGAGAATTAAGCCACAGAAGGTAAACTATGCATTAAATAACAAGAAACAGTGTTCGACTGGTAAGAAGAGAACTAAAcagtatctttaaaataatgcatttgtagCATTGAACATACATAAATGACAGTTGCCTATAGTAATATAGtaagttaaaaacacaaataattttgtttgtttacatctaCATGCCATTTATGAGAAACACAATGTCAAGGTGATCTGAACGATAATCATCCTGCAGATATTATACAAGTGTTACATTCCATATAACTGTCTTAAACCGATTCCAAATAATGAAGCTACCACGGTCTCCACTGAAGAAGAAAGCTCAGTGTCATGGCCTTTCAGATAGGGGTAATGCCAATTGAAATGGGAGTTTACCACTGGTGTTGTCTCACTTTGGATCTGCTGGCAGAAACCTTGAAGATATAGGTTGTGTTGCTCTTGGATGGAACCATTATCTTACAATATAAGGCTTTGCATTTCCAGCAGTTAATTGCATGCATCTCGCCCGCATCACACCTTTGAAATGCACTAACACTGCTTCGCTTTACTAATGCTCAGCTATGCGTTGCATGTGACAGATACACTGCATGAAACGGCAGTTTCCATATTTAGTCCGAGCTGCAGGAACCTGGATTTTAGTCGACAGTGTGGGGGGAAGGCACGGGGCGGTCAGGGATATTTTAGTCTTTAAAAAACGAAAGGAGCAAAGATTAGGTTTGGGGCACTACTCGCTGAATGCGTCTCCTTTCAAGTTTGAGAAGGTATTTTCAGCTGATAATATGAGACAGAAGTTGTGCTCTTGGAGTCCCTCCTGACTGGGAGACAGGACAGAGATTTGGGGGGGGTGGTTATTGAAGGTAAAACTATTTTTCATTAAGGCACTAATCGATCGGGACCTGGACACTATTCGCGTTATTGCTTGTGATTCTGAGCTACGTACACTAGATGTAGGCAAGTTGCTTCTGATGTGTAAGATAAAtattatatagaaataaatacatatattttgttttatgcaatgtcaggtcaaagaaaacaaagggcaCTGTAGAGTAGAGAGAGATGGCTGTGAAAGGTCCAACGCGTGCAGCTGTGGCGCTCAAATGCTGGAGATTAGATTTGTTACTCAAGTCTCGATGCCTTACAGCTCTGCCGAACACACATTTACCAGTGCTAGAAGGCAAACATTGGGGGCCTGCTGGAATCTGTTAGGAGCGGAATATCTTATAGACATTCATCTGAAcgttaaatgtttttgttctttacagGTCAACAAATGTGACTTATAAGCGTACAGAGGGTCATTTGCACCCCTGCcaccttaaaatatataactaaattCATAAGCGTAGTAAACAATCCTGTTTGGTCTCTGATGTAGCCTCACGGTGAATCAAATCGCCCTTGCTGAGCCTGGAGTAGGTGAATTATACTCCGAAATTTGATTTGTCATAATAGCACGGATGCCTGGGGACTGCATCGCCATTTTGTGACTCATGGCCACTGTGTTTGCGTCATTTGCATTGGAAATTCAGGGAAGGCGGCAGAGCTGCCTTTCTGGCCAAAATCCTCGAGGTCTTTCACACCCCAACCAGACAAAGCACCAGTGACCGAGACAACAAGGTTATAAAAGCAAGACTGCAAGGGGAAACACCCGCACAGGCTCTGTattatgatttttgtgtgtgttttacatcaCAATTTCTACCTGCTTTTCCCAAAATTCATTCccattccttctttttttttttttcctcccgtGTAAATAAGACCAAATCGTGTCATTTGAGGACCAGCTGTCTGTATGGACCacttaaaaccataaaacaataatgaagcaaagaaataaaagccCCCAAGATGTGGCTACTACTggaatgttttgcatatttttcagaaaagagaaaaaaaaaaatgaaaaaaaaaaaatagttgtgTAGCAACTAAGCATTAGAGTCACTGACAAACGTGTAAATACAAGAAGGAAATCCACACAACAGTAGAGTAGAAACTTGTGACCGGTGTTGTgcatattttagtgttttttctgtattttatcaccaagtactaaaaaaaaaaataattcaaaagaaaaaaaaagtacaaaaaaaaaagattgtgttTCTAGCCATCTGTAactttttatatgtgtttgtgatttataaGTGTTTGTGCTGATGGAATGCTTTCCTGTCCCATTCAACTATATACATGTCTGCTGAAGAATTAAACTTCTATATTATACCTAAATATCTTTCTTATACATGCATAGATCAGTGCTTTTCTGTGTTACACCCATATTTTATATGctaatatttatattgctgttttattttctctttgaacactgacatttcaaataa

Function

GO: NA

KEGG:

id description
K16497 PCDHGC; protocadherin gamma subfamily C

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011365 True 6337 mRNA 0.47 4 20323050 20339325
TU132823 False 3497 TUCP 0.42 4 20296011 20339087

Neighbor

gene id symbol gene type direction distance location
AMCG00011364 NA coding upstream 300041 19987249 ~ 19995970 (+)
AMCG00011363 NA coding upstream 338377 19956472 ~ 19957634 (+)
AMCG00011361 NA coding upstream 340924 19954620 ~ 19955087 (+)
AMCG00011359 NA coding upstream 376822 19914612 ~ 19919189 (+)
AMCG00011360 hars,LOC106611772 coding upstream 386418 19902161 ~ 19909593 (+)
AMCG00011373 NA coding downstream 399057 20738382 ~ 20739024 (+)
AMCG00011374 NA coding downstream 615469 20954794 ~ 20958447 (+)
AMCG00011380 NA coding downstream 787785 21127110 ~ 21131535 (+)
AMCG00011381 NA coding downstream 887885 21227210 ~ 21236755 (+)
AMCG00011387 NA coding downstream 980099 21319424 ~ 21385863 (+)
G106138 NA non-coding upstream 281663 19978247 ~ 20014348 (+)
G106134 NA non-coding upstream 300024 19957005 ~ 19995987 (+)
G106071 NA non-coding upstream 492536 19803171 ~ 19803475 (+)
G106022 NA non-coding upstream 707038 19588193 ~ 19588973 (+)
G105858 LOC105030512,LOC106609167,LOC106569888 non-coding upstream 1678946 18616850 ~ 18617065 (+)
G106277 NA non-coding downstream 276113 20615438 ~ 20615641 (+)
G106298 NA non-coding downstream 568125 20907450 ~ 20907653 (+)
G106310 NA non-coding downstream 612897 20952222 ~ 20952712 (+)
G106327 NA non-coding downstream 680885 21020210 ~ 21022119 (+)
G106347 NA non-coding downstream 689468 21028793 ~ 21033188 (+)
G106139 LOC108275110 other upstream 133045 20095229 ~ 20162966 (+)
G105916 NA other upstream 1073590 19222055 ~ 19222421 (+)
AMCG00011328 NA other upstream 1178642 19107273 ~ 19117369 (+)
G105778 LOC105024433,LOC107752029,LOC107743918,LOC106604409 other upstream 2507961 17784163 ~ 17788050 (+)
AMCG00011293 plac8l1 other upstream 3313770 16978492 ~ 16982241 (+)
G106242 NA other downstream 21883 20361208 ~ 20367223 (+)
G106613 NA other downstream 3001983 23341308 ~ 23341765 (+)
G106618 NA other downstream 3016737 23356062 ~ 23356559 (+)
G106711 zgc:175280,slc7a1,LOC107719755,LOC107702889,LOC107557764,LOC103353344,LOC106563607 other downstream 3409349 23748674 ~ 23753002 (+)
AMCG00011430 dctn4,LOC107749746,LOC106604160 other downstream 3496494 23835819 ~ 23844911 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G146464 LOC108274931,LOC108438827 non-coding NC_047603.1 CM018549.1 10862361 ~ 10864581 (-)