AMCG00011360 (hars,LOC106611772)


Basic Information

Item Value
gene id AMCG00011360
gene name hars,LOC106611772
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 19902161 ~ 19909593 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011360
AGCAGCGCAGTGCGCACCGGCGAGGAGGCACCATGGCGGACAGAGCGCAGATACAGGAGGCCATCAAAACACAGGGAGAGGCTGTGAGGAAGCTGAAGGAGCAGAAAGCCAGCAAGGACCAGATCGATGAAGAGGTTGCAAAACTTCTGGAACTGAAGGCACGACTAGGGACCGATGATGGCAAACACCCCTTTGTGCTCAAGACCCCTAAGGGTACAAGGGACTATAACCCCAAGCAGATGGCGATCAGAGAAAAGGTGTTCAGCACCATCATCGGCTGCTTCAAGCGCCACGGTGCCGAGACCATCGACACGCCTGTGTTCGAGTTAAAGGAAACCTTGACTGGAAAATACGGTGAAGACTCCAAACTCATCTACGATCTAAAGGATCAGGGTGGTGAGCTGCTGTCCTTGCGTTACGATTTAACTGTTCCATTTGCACGTTACTTGGCTATGAATAAGATCACCAACATCAAGAGATACCACATCGCAAAGGTTTATCGGAGGGACAACCCTGCCATGACCAGAGGACGTTACAGGGAGTTCTATCAGTGCGACTTCGACATCGCTGGCCAGTACGACCCAATGATTCCCGATGCCGAATGCCTGAAGATCGTTCATGAGATTCTGAGTGAACTGCAGCTGGGGGATTTCCGCATAAAGGTGAACGACAGGCGGATCTTGGATGGCATGTTTGCCGTCTGTGGGGTACCAGATGACAAGTTCAGAACCATTTGCTCGACTGTTGACAAGCTGGATAAGGCGTCCTGGGAGGAGGTGAAGAGTGAAATGGTTGGAGAGAAGGGAGGACTTGATCTGGCTGAGAAACTGCTTCAAGACGCCAAGCTATCCCAGAGCAAGCAGGCTGTTGCTGGGCTCACAGACATGAAGCAGCTCTTCAAATACCTGGAGCTCTTCAAAGTCACGGATAAGGTGGTGTTCGACCTGAGCCTGGCTCGGGGGCTGGACTACTACACGGGGGTGATCTACGAGGCCGTCCTGACGCAGACGCAGGCAGAGCCCCAGCCTCAGAAGCAGAACAGCAACGCGGCGGAGGAGCCGGCCAGCGTGGGCAGCGTGGCCGGGGGAGGCCGCTATGACGGACTGGTGGGGATGTTCGACCCCAAAGGCAGAAGGGTGCCTTGTGTGGGAGTCAGCATTGGCATCGAGAGAGTTTTCTCCATCATGGAGCAGAAGGCTGAGGCCTCGGCAGACAAGATCCGCACTACAGAGACCGAAGTCATGGTGGCTTCAGCGCAGAAGAACTTGCTGGAGGAGAGACTGAAGCTGACGGCTGAGCTATGGGATGCTGGAATCAAGGCTGAAGTCATGTATAAGAAGAACCCGAAACTGCTGAGCCAGCTGCAGCACTGCGAAGAAACAGGAATCCCATTTGTTGCCATAATCGGGGAACAGGAGATCAAGGATGGGGTTGTGAAGATCCGCAATGTAGCCACCAGGGAGGAGGTTGATGTGACCAGAGCTGACCttgtaaaagaaataaaaaataaactccagTCCTAAATTATGGTAGTTACCTCATATCGTCTGGATCTACAGCATTTCCCTCCTGGGACATCCTCTAACCACCAATAAACACTGAGCTTGAAATGCAGCAAATACACAACTTGCTCGTCTGTAATTATGTATAAGAATGAATTTATTGTGAAGTTCTTGCATTCCAACTGTATTGCCTTGCctaactcattgtattgtaggAAGAACTTGAGCCTTTCTGGAATAGTTTTCAagatcttaaaaataaactgtcccCCATGCAGGTGTTCAGTgcaagcactttttttttttt

Function

symbol description
hars Predicted to enable ATP binding activity and histidine-tRNA ligase activity. Acts upstream of or within regulation of vasculature development and sprouting angiogenesis. Located in mitochondrion. Is expressed in nervous system; optic cup; optic vesicle; and otic vesicle. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease, axonal type 2W; Perrault syndrome; and Usher syndrome type 3B. Orthologous to several human genes including HARS1 (histidyl-tRNA synthetase 1).

NR:

description
PREDICTED: histidine--tRNA ligase, cytoplasmic-like isoform X2

GO:

id name namespace
GO:0006427 histidyl-tRNA aminoacylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004821 histidine-tRNA ligase activity molecular_function

KEGG:

id description
K01892 HARS, hisS; histidyl-tRNA synthetase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011360 True 1809 mRNA 0.51 13 19902161 19909593

Neighbor

gene id symbol gene type direction distance location
AMCG00011358 LOC106603042,LOC107757604 coding upstream 3903 19889328 ~ 19898258 (+)
AMCG00011353 ik,LOC107692978,LOC107661680 coding upstream 14531 19842173 ~ 19887630 (+)
AMCG00011352 NA coding upstream 272735 19619982 ~ 19629426 (+)
AMCG00011351 NA coding upstream 293136 19601365 ~ 19609025 (+)
AMCG00011347 NA coding upstream 402956 19485659 ~ 19499205 (+)
AMCG00011359 NA coding downstream 5019 19914612 ~ 19919189 (+)
AMCG00011361 NA coding downstream 45027 19954620 ~ 19955087 (+)
AMCG00011363 NA coding downstream 46879 19956472 ~ 19957634 (+)
AMCG00011364 NA coding downstream 77656 19987249 ~ 19995970 (+)
AMCG00011373 NA coding downstream 828789 20738382 ~ 20739024 (+)
G106071 NA non-coding upstream 98686 19803171 ~ 19803475 (+)
G106022 NA non-coding upstream 313188 19588193 ~ 19588973 (+)
G105858 LOC105030512,LOC106609167,LOC106569888 non-coding upstream 1285096 18616850 ~ 18617065 (+)
G105811 NA non-coding upstream 1654393 18175355 ~ 18247768 (+)
G105794 NA non-coding upstream 1869136 18032755 ~ 18033025 (+)
G106134 NA non-coding downstream 47412 19957005 ~ 19995987 (+)
G106138 NA non-coding downstream 68654 19978247 ~ 20014348 (+)
G106277 NA non-coding downstream 705845 20615438 ~ 20615641 (+)
G106298 NA non-coding downstream 997857 20907450 ~ 20907653 (+)
G106310 NA non-coding downstream 1042629 20952222 ~ 20952712 (+)
G105916 NA other upstream 679740 19222055 ~ 19222421 (+)
AMCG00011328 NA other upstream 784792 19107273 ~ 19117369 (+)
G105778 LOC105024433,LOC107752029,LOC107743918,LOC106604409 other upstream 2114111 17784163 ~ 17788050 (+)
AMCG00011293 plac8l1 other upstream 2919920 16978492 ~ 16982241 (+)
AMCG00011268 NA other upstream 3791780 16105586 ~ 16110381 (+)
G106139 LOC108275110 other downstream 185636 20095229 ~ 20162966 (+)
AMCG00011365 LOC108438827,LOC108243066,LOC107376386 other downstream 386418 20296011 ~ 20339325 (+)
G106242 NA other downstream 451615 20361208 ~ 20367223 (+)
G106613 NA other downstream 3431715 23341308 ~ 23341765 (+)
G106618 NA other downstream 3446469 23356062 ~ 23356559 (+)

Expression


Co-expression Network