G106242


Basic Information

Item Value
gene id G106242
gene name NA
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 20361208 ~ 20367223 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU132939
ACCTTCATTAAAATGGAGATCAATCATTCTcaaagcaaatgtgtttaatattatattttgttacaataataacatttaaaaaatccagaatataaatgaaatggaaagaaaagaaaaacaagaacaccaGCTTGAAATTTGAACCCTGAAATGGATCCCATGAACTTTATTGAAACTGTCATTGATATCGCACCATGTTTTAAACGCACACTTGACCCTGTCcgaggtctctctctctgtactctCAATAACGGTAACGACTGAACACTGCGAGTCGAGCCTGTCCGACGTGGGACACCATAGGATGAAGGACGTGGTCTCTTATTTCAGTTAATATGCGTCACCTAATCGGCGTTTCATGTAAAAGGTAGTAGTTTCCCCAAAGCCAGCGCTCAAAGATCTTCAGCTAATCTTCCTATAACAGTGTCTCCCAGCAGTGTCCATCAGAGGCTCAAAGCACAGGGACAGACGTGGCCAACAGCTGCCTGGAAGACTCACGGGGAGAGGGCAGACAGGGACCCCTCCACTGTGAGGAAATACAGCGTCGGCAGGACGTTGGGACACAGAATACATTCACCCTGATGTCTGATGGCCTACAGGCTGGAGAGAAGAAAGCCCTGGCAGTGGACAGCAATGAACCCCCCCATTAGCCCCACCAGCATAATTACACGGTGCCCATCACTTGATTTCCCCTATTAACCGCCTTCATGCACGCTAAAGTGTGATCCCCAGTGATATTGTATCTCTGCATTAATGGCTGGAGCTGACTAAAAGCGACCGAAGACACTCTAAAGAACATAAGATATgaatatttctattttattgtgtttgctTTGCAGATACAGTGGTTGTCTTTTGATATGTCTTAATAAACCTtgacattgatttattaaaaaaaaaaaaaaaaaaaaagagatgtttAAAGTTGGTTAATAACAAAAaccacccccaaaaaacacaccGAAAAGAAGTGATGAGGTACCAGACCTGCTGAATATACTGTAAAGACGTGGAAATGAATGTGAAGGACAGTACGAGGTGTTGCGTTACTCACAGCAGCACCTTGTCATCGGATTGAAATGTGCAGACTGGAGACGCATTGGCACTTGTGGCTTTCACATGTATACACTCAGGAAAGTAAAAATGCATCACGTgcccaaaacacaaaatgtgagaTGTTATTTTTAGTCAATTCCAGCCATTGCTTCGGACACTGTGGTATCGAGTTTGGAGACAGGAGACCGATGACCTGCGCTGGTTCTGCCAACTGGAGCCTGCGACGGTCAAATCTTCAGTCTGAGCTCGCGTGTCACAGGGAACGACCAGATCTTTGGCTTTACCACTAACATTACACTAAAGGGccggaaagaaaaaaaaggagataATGAACTTATGGCTGACCAAACCGTCACCTCACATGCGTGTGGATTCACTCGATATTGTCAGTGCGAAGAGATTATATGGTAAATGCATGTAAAGAGACCATGAGTCGATACATTCTACCTGACTTTGATCCAGTGTAAATAGAAGCCTTTAGCAACTGTATCAGTGCTAAAAGGTGGAATATCAATTAAAGTAGCAGTCTTTCAACAAGCGGGAAGCTAGGAACCATCTTCACGTCAAACTCCTTGAACACAAGCGCCTGCCAGcatgtatcattttaaaacagtcacATTCACGTGGGTTTCATCAGAACATACTGTGCGCCTCTCAGTCAGTGGGATTTCTGAATCCTCGTCTCAAACACTTAATTTCTTTCACTTTATCGTTTGAATCCATCGCGGTGGTTTCCGGTTTAACTGGATCTCGCCGGGGCCGCGTCCAGCATCTCTTCCAGCGTCTCTGCCTCGGCGGTCTCcgctttcttttcctttttctcctccttttcGGCTTTAGCCTTTTTCAGAGGATGGCTGCTGCCAACGGAATCGTCCTGCAACAGTTCCTTGGCCAGGATCGAGGTCACAGCATTGCCAGCTCTTCGGTTGGCTGGAATGACAAAAAGGAAACGTCAAGAGTTGTAAAGTCGGAGGAGAAAGACAGACGGGCCCTCTTCCTGAGTGGGAGAAGACCACCGAACCTGCGTAATGGGGACCGTGGGGAGCGCGCCGAGACGAGCTGCGCTATGAGCAGCTCTTCTCCTGGAGGGTCTTGGGAATGGAAGGAGAGAAGACACTTGATATACAAACCACAGCCCACAAGCAGAGGGCCAGAGGAAGTGCGCTAATCTTATGATAAAGCTTTTAACAGAGCTTcaatggaaatattttaataaaatgcccCCTCTGAATTTCCCTGAGGGAgatactgta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU132939 True 2312 TUCP 0.45 3 20361208 20367223

Neighbor

gene id symbol gene type direction distance location
AMCG00011364 NA coding upstream 365238 19987249 ~ 19995970 (+)
AMCG00011363 NA coding upstream 403574 19956472 ~ 19957634 (+)
AMCG00011361 NA coding upstream 406121 19954620 ~ 19955087 (+)
AMCG00011359 NA coding upstream 442019 19914612 ~ 19919189 (+)
AMCG00011360 hars,LOC106611772 coding upstream 451615 19902161 ~ 19909593 (+)
AMCG00011373 NA coding downstream 371159 20738382 ~ 20739024 (+)
AMCG00011374 NA coding downstream 587571 20954794 ~ 20958447 (+)
AMCG00011380 NA coding downstream 759887 21127110 ~ 21131535 (+)
AMCG00011381 NA coding downstream 859987 21227210 ~ 21236755 (+)
AMCG00011387 NA coding downstream 952201 21319424 ~ 21385863 (+)
G106138 NA non-coding upstream 346860 19978247 ~ 20014348 (+)
G106134 NA non-coding upstream 365221 19957005 ~ 19995987 (+)
G106071 NA non-coding upstream 557733 19803171 ~ 19803475 (+)
G106022 NA non-coding upstream 772235 19588193 ~ 19588973 (+)
G105858 LOC105030512,LOC106609167,LOC106569888 non-coding upstream 1744143 18616850 ~ 18617065 (+)
G106277 NA non-coding downstream 248215 20615438 ~ 20615641 (+)
G106298 NA non-coding downstream 540227 20907450 ~ 20907653 (+)
G106310 NA non-coding downstream 584999 20952222 ~ 20952712 (+)
G106327 NA non-coding downstream 652987 21020210 ~ 21022119 (+)
G106347 NA non-coding downstream 661570 21028793 ~ 21033188 (+)
AMCG00011365 LOC108438827,LOC108243066,LOC107376386 other upstream 21883 20296011 ~ 20339325 (+)
G106139 LOC108275110 other upstream 198242 20095229 ~ 20162966 (+)
G105916 NA other upstream 1138787 19222055 ~ 19222421 (+)
AMCG00011328 NA other upstream 1243839 19107273 ~ 19117369 (+)
G105778 LOC105024433,LOC107752029,LOC107743918,LOC106604409 other upstream 2573158 17784163 ~ 17788050 (+)
G106613 NA other downstream 2974085 23341308 ~ 23341765 (+)
G106618 NA other downstream 2988839 23356062 ~ 23356559 (+)
G106711 zgc:175280,slc7a1,LOC107719755,LOC107702889,LOC107557764,LOC103353344,LOC106563607 other downstream 3381451 23748674 ~ 23753002 (+)
AMCG00011430 dctn4,LOC107749746,LOC106604160 other downstream 3468596 23835819 ~ 23844911 (+)
AMCG00011455 unc5a,LOC107677380,LOC107653334 other downstream 5240763 25607986 ~ 25662179 (+)

Expression


Co-expression Network