AMCG00011430 (dctn4,LOC107749746,LOC106604160)


Basic Information

Item Value
gene id AMCG00011430
gene name dctn4,LOC107749746,LOC106604160
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 23835819 ~ 23844911 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011430
CCGGGTGGAGGAGTCTAGAGATGGCGTCCTTGCTGCAGCCCGAGCGAGTGCTCTACCTCGTCAACGGAGAGAAGAAGATTCGCTCCCCGCTGTCGCACCTGTATTTCTGCCGCTACTGCAGTGAGCTCCGGTCTCTGGAGTGCGTCTCCCATGagGTGGATTCTCATTACTGTCCCAGCTGCCTGGAGAACATGCCGTCAGCTGAAGCCAAGCTGAAAAAGAACAGGTGTGCCAACTGTTTTGACTGCCCGTGCTGCATGCACACTCTATCCACAAGAGCCACCAACATCCCTGCCCCCCTCCCAGATGACCCTGCCAAGACTGCTATGAAGAAAGCCTACTATCTGGCCTGTGGCTTCTGCCGCTGGACCTCGCGCGATGTGGGCATGGCCGACAAGTCTGTAGCCAGTGGAGGCTGGCAGGAACCCGAGAACCCACACACCCAGAGGATTAACAAGCTGATAGAGTATTACCAGCAGCTGGCCCAGCGAGAGAAGGTGGACCGAGACAGGAAGAAACTGGCGAGACGTCGTCCTTACATGCCTCTGGCCTTTTCGCAACACACTATTCACGTGGTGaaaaataacttgtataaaAGGGGAGTTACAAGATATGAGAGACCACAAGCATCAGCagaatatattcatattgttttaattgccaTTAGACTGAAAGAAGGTGAGGACCAGAAGGAGATAAAGATTGAACCTGCCCAGGCTCTGGATGAGGTGGAACCACTTCCTGAAGACTGCTACACACGTCCCATTAACCTGCCGGAAGTGACTACACTGCGCCAGCGTCTCCTGCAGCCTGATTTCCAGCCGGCCGGGGCCTCTCAGCTGTACCCCAGACACAAGCACCTCCTGATCAAGCGCTCCCTCCGCTGCCGGAAATGTGAGCACAACTTGAGCAAACCAGAATTCAATCCGACTTCGATTAAGTTTAAAATTCAGCTGGTGGCAGTGAATTACATCCCCGAGGTGCGAATCATGTCTATTCCAAACCTGCGATATATGAAGGCAAGTGTGACCTCCTTAGAAAGCCAGGTCCTTCTGACCTTGACAAACCCAGTAGAGAACGTCACGCATGTCACCCTGTTGCCATGTGAGGAGGGAGACCAGGACGACTTAAACAGCACAGCGAAGGTTGTGGTGCCTCCTAAGGAGCTGGTCTTGGCTGGGAAGGATGCTGCAGCAGATGTGGTGGCCTTCAGGAAGTCGAACAAGATTGGCTTCTTCATCAAGGTGATTCCACAAGGTGAGGAAGGGGAGGTGGTGGTGTCGTTCAAAATCCGCCACGATTTCCGCAACCTGGCCGCCCCCATCCGCCCCACTGACGACGGGGAGCCGGGGAGCGAGCCCATCTGGCTCACCCACCATGTGGAGCTGAGCCTGGGACCCCTGGCACCACCCACACAGTGAGCCCCCCGGCACAGTGCTGATCTGAGCTCGAGCCGCCAGAGCACCCTTGTAGTCCTTCATAGCACCAGGAGAGGGCACTGTGGCACAATTGCTCTCCTGTAAACAACTGATACCCACTAAAGAACAAAAGATCTCGACATCCTGTTAGAAGGAGCTGCTAACCATTGATTATTCGCAATTTCCACAGGCCTTTTTATTTATAACCTGTTGAACTAAGGCATTAGTTCAGATGACCGCATAGCTTCGGTGGATGAGGTTTTCAGTTTCGAGGTATTTatcaatgcctttttttttttaattgcaatgtaATTTGATGTAGGTTTCTGGAGGATATTTTTACTTGGTATGGCATACTTTGTGGAATTTATTGCAGTACAGTTATGAATTTATCTGGTTTCTTCTTGAGTCAGAAATACAACGATGACGTTTATTTGCCATTGACAAGAATTGGAATTTGTTAACCTGTATGTATGAATGCTTAAGTTAAGGCCTAAGACATttataaaaagacattttacccatataacaatgtatttatcaaCTGAGTCATTTAATGTttccagattaaaaataaataaatacaaacttcCAAATATAGTTGTTATAAACTTTAGTGTGCCGACATATCTGGAGAaccttgttttttaaacaaacacttttgtGGTTTCTGGCATTCCAACAGTTAAGTgcttttttattccattttgcTGATACAGAATTGTAGCTACTGAGTTGTCTTGTTTACAAACCTCTTGGCTTCTAGAAATCAGATTGAATGCAGCGTGGTAAAATCTGTCCAGCACTTAACACACTTCCCCAGGTAGTCaagttgtatattttgtaagctGTGCTCATTGTTACAACTTTCTCATGGGTGGAAAGAGTTAaaacgttttctttttttaagcaacAATTCCTCTAAAAAGCTACATggaatgtatacattataaaaatatgaaatgtccCTCCAACAACTCTTAAAACTGTACAGCAGTTTATTCACAGATTCGGTGGAGCTCCGATATTCGCATTTCATTAATTCTGATTAAAGCCCTTCTGATAACAGACAGTTGTGATATCCAACATGCCCCAGAAGGTGTGGTCAGGTGTGGTCAGTCTACCAATCTGAAGTTCATATTAAAGCAGAGTCCTCCATTTTGGCTCCGTTACTTGACACATTTTATGGGTGACCAAAAACATGATTGTTTACAGCTTGTGATACACATTACACTGATCGAGCATGAGAAGCTAcaagtatttattcaatgtaGTGTTGAAGAAGCTGTCTGCATGTGCTtgaatctttcttttttctgttttaacatCTTTTATAATGGTTTcctgtatttattatgaaagCTGGATACAGTATGGTTGTTTTGGGCATCGTGAGGGGACAAGAAGCACTGAAATATCTTCAGAAAGGTTAACTGTTCACACGCAGTCTGATGTCTTGTTGTTCATGAAGATTAATGGCCCCATTTGACATGGATGAAAGCTTTCCTCTTACCCGACTTCATCAGTGCTGTGGGTCAGGGAATATGTGATTATTACGGCCGTATGACAAATTGGATGGAAACCGTTTCCATTCACTGCTGTGAAAGTGAAGGCTGTGTATCTTTTGAACACTAATTTCTTTTTTCTACAAAGTGCATCTCGTTTGAGAAAGTAACTCTCATAATCTGTAGGTTTAAACATGACACAATATCTGCTTCATGTTAAAAGGTCTCTGTGTGCTTAATGTTCAAAGTAATATTCTTCCTGCTTAATTGATGAAATAAGTGTTATTCTTTAAGCCAGTGCTACTTCAACAGTTGATTTAAGACTGAACACCAATAAAGCTGACTGATTACAGATGTA
>TU133524
ATAATGTAGTTTGGCATCTATTTCTaaccattcattgtttttacagGAAAGCCAGGTCCTTCTGACCTTGACAAACCCAGTAGAGAACGTCACGCATGTCACCCTGTTGCCATGTGAGGAGGGAGACCAGGACGACTTAAACAGCACAGCGAAGGTTGTGGTGCCTCCTAAGGAGCTGGTCTTGGCTGGGAAGGATGCTGCAGCAGAGTATGATGAGCTAGCAGAGCCACAAGACTTCCAGGATGACCCAGATGTGGTGGCCTTCAGGAAGTCGAACAAGATTGGCTTCTTCATCAAGGTGATTCCACAAGGTGAGGAAGGGGAGGTGGTGGTGTCGTTCAAAATCCGCCACGATTTCCGCAACCTGGCCGCCCCCATCCGCCCCACTGACGACGGGGAGCCGGGGAGCGAGCCCATCTGGCTCACCCACCATGTGGAGCTGAGCCTGGGACCCCTGGCACCACCCACACAGTGAGCCCCCCGGCACAGTGCTGATCTGAGCTCGAGCCGCCAGAGCACCCTTGTAGTCCTTCATAGCACCAGGAGAGGGCACTGTGGCACAATTGCTCTCCTGTAAACAACTGATACCCACTAAAGAACAAAAGATCTCGACATCCTGTTAGAAGGAGCTGCTAACCATTGATTATTCGCAATTTCCACAGGCCTTTTTATTTATAACCTGTTGAACTAAGGCATTAGTTCAGATGACCGCATAGCTTCGGTGGATGAGGTTTTCAGTTTCGAGGTATTTatcaatgcctttttttttttaattgcaatgtaATTTGATGTAGGTTTCTGGAGGATATTTTTACTTGGTATGGCATACTTTGTGGAATTTATTGCAGTACAGTTATGAATTTATCTGGTTTCTTCTTGAGTCAGAAATACAACGATGACGTTTATTTGCCATTGACAAGAATTGGAATTTGTTAACCTGTATGTATGAATGCTTAAGTTAAGGCCTAAGACATttataaaaagacattttacccatataacaatgtatttatcaaCTGAGTCATTTAATGTttccagattaaaaataaataaatacaaacttcCAAATATAGTTGTTATAAACTTTAGTGTGCCGACATATCTGGAGAaccttgttttttaaacaaacacttttgtGGTTTCTGGCATTCCAACAGTTAAGTgcttttttattccattttgcTGATACAGAATTGTAGCTACTGAGTTGTCTTGTTTACAAACCTCTTGGCTTCTAGAAATCAGATTGAATGCAGCGTGGTAAAATCTGTCCAGCACTTAACACACTTCCCCAGGTAGTCaagttgtatattttgtaagctGTGCTCATTGTTACAACTTTCTCATGGGTGGAAAGAGTTAaaacgttttctttttttaagcaacAATTCCTCTAAAAAGCTACATggaatgtatacattataaaaatatgaaatgtccCTCCAACAACTCTTAAAACTGTACAGCAGTTTATTCACAGATTCGGTGGAGCTCCGATATTCGCATTTCATTAATTCTGATTAAAGCCCTTCTGATAACAGACAGTTGTGATATCCAACATGCCCCAGAAGGTGTGGTCAGGTGTGGTCAGTCTACCAATCTGAAGTTCATATTAAAGCAGAGTCCTCCATTTTGGCTCCGTTACTTGACACATTTTATGGGTGACCAAAAACATGATTGTTTACAGCTTGTGATACACATTACACTGATCGAGCATGAGAAGCTAcaagtatttattcaatgtaGTGTTGAAGAAGCTGTCTGCATGTGCTtgaatctttcttttttctgttttaacatCTTTTATAATGGTTTcctgtatttattatgaaagCTGGATACAGTATGGTTGTTTTGGGCATCGTGAGGGGACAAGAAGCACTGAAATATCTTCAGAAAGGTTAACTGTTCACACGCAGTCTGATGTCTTGTTGTTCATGAAGATTAATGGCCCCATTTGACATGGATGAAAGCTTTCCTCTTACCCGACTTCATCAGTGCTGTGGGTCAGGGAATATGTGATTATTACGGCCGTATGACAAATTGGATGGAAACCGTTTCCATTCACTGCTGTGAAAGTGAAGGCTGTGTATCTTTTGAACACTAATTTCTTTTTTCTACAAAGTGCATCTCGTTTGAGAAAGTAACTCTCATAATCTGTAGGTTTAAACATGACACAATATCTGCTTCATGTTAAAAGGTCTCTGTGTGCTTAATGTTCAAAGTAATATTCTTCCTGCTTAATTGATGAAATAAGTGTTATTCTTTAAGCCAGTGCTACTTCAACAGTTGATTTAAGACTGAACACCAATAAAGCTGACTGATTACAGATGTATCTCATGTCTtgtgcattattaaaaatgaaggatGTTGGTTCCA

Function

symbol description
dctn4 Predicted to be part of dynactin complex. Orthologous to human DCTN4 (dynactin subunit 4).

NR:

description
PREDICTED: dynactin subunit 4 isoform X1

GO:

id name namespace
GO:0005869 dynactin complex cellular_component

KEGG:

id description
K10426 DCTN4; dynactin 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011430 True 3281 mRNA 0.45 13 23835819 23844867
TU133524 False 2379 lncRNA 0.41 3 23841932 23844911

Neighbor

gene id symbol gene type direction distance location
AMCG00011426 NA coding upstream 22103 23786963 ~ 23813716 (+)
AMCG00011425 NA coding upstream 60311 23760289 ~ 23775508 (+)
AMCG00011420 NA coding upstream 158543 23663024 ~ 23677276 (+)
AMCG00011418 NA coding upstream 178377 23656670 ~ 23657442 (+)
AMCG00011419 NA coding upstream 212519 23622780 ~ 23623300 (+)
AMCG00011429 NA coding downstream 64789 23909700 ~ 23938038 (+)
AMCG00011434 ctnna1 coding downstream 304046 24148957 ~ 24174504 (+)
AMCG00011435 ctnna1,LOC107594945,LOC107750356 coding downstream 365079 24209990 ~ 24242241 (+)
AMCG00011437 NA coding downstream 948461 24793372 ~ 24808824 (+)
AMCG00011439 NA coding downstream 972668 24817579 ~ 24824029 (+)
G106718 NA non-coding upstream 2519 23829289 ~ 23833300 (+)
G106640 fat2 non-coding upstream 295091 23539365 ~ 23540728 (+)
G106631 NA non-coding upstream 313888 23382282 ~ 23521931 (+)
G106619 NA non-coding upstream 474805 23356734 ~ 23361014 (+)
G106609 NA non-coding upstream 480176 23353628 ~ 23355643 (+)
G106742 NA non-coding downstream 96101 23941012 ~ 23971183 (+)
G106863 NA non-coding downstream 1074940 24919851 ~ 24943678 (+)
G106871 NA non-coding downstream 1094111 24939022 ~ 24940823 (+)
G106874 NA non-coding downstream 1141927 24986838 ~ 24991237 (+)
G106906 NA non-coding downstream 1202613 25047524 ~ 25049147 (+)
G106711 zgc:175280,slc7a1,LOC107719755,LOC107702889,LOC107557764,LOC103353344,LOC106563607 other upstream 82817 23748674 ~ 23753002 (+)
G106618 NA other upstream 479260 23356062 ~ 23356559 (+)
G106613 NA other upstream 494054 23341308 ~ 23341765 (+)
G106242 NA other upstream 3468596 20361208 ~ 20367223 (+)
AMCG00011365 LOC108438827,LOC108243066,LOC107376386 other upstream 3496494 20296011 ~ 20339325 (+)
AMCG00011455 unc5a,LOC107677380,LOC107653334 other downstream 1763075 25607986 ~ 25662179 (+)
AMCG00011476 NA other downstream 2511256 26356167 ~ 26360775 (+)
G107202 NA other downstream 2925527 26770438 ~ 26771214 (+)
AMCG00011488 NA other downstream 2973141 26818052 ~ 26842792 (+)
G107394 NA other downstream 3867295 27712206 ~ 27727867 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location