AMCG00011426


Basic Information

Item Value
gene id AMCG00011426
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 23786963 ~ 23813716 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011426
GCTGTTTACATCGGGCTGGAAATTCCCATGTTGCAACACGGAACACTCGCACTTCCGCGATCATTTTCACAACTGCGTTAGGACGGTAGACTGCTTTGAACGTTTGCCCTCTCAGCAGGACAGTGTAAGACCCTGCAGCAGTATGTTTTGTAAGTAAAGTGCTACCAATGGAGGGGAAAGGGCCCTATCGAATTTATGACCCGGGTGGGAGTGAGCAGAAGGAAGAAGCAAGCAGTTTGGCCTACAAACAACTACTGGAAGAGAACTGCATTCTGAGGGAGCGGATGAAGGGTCTCAAGAGCTTAGGGGACCTGCTAGAAGAATCCCAGACGGAGGCATCAAAATTACGTCAACGAGTGGAAGAGCTAGTGAGAGACAACGAGGTCCTGAGATCCTCATCCAGCTTTAATTCAAGTCTGGGCATTGGCATTCCAAAACAAACCCAAGGCCAAAATAAGAGTCATGAAAACTCCAATCCAGAACTGAAGGAAACTCAAGAATGCAAACTTAGAACTGACCTGAGACCGGTCTCTAGTGAAGGCTCCTCAGAGTTTGAAGTTGTGAATCTTGTGGAAAGACAAGGGTCTAATGAAGAAACCAAATCTGGGGCAGAGTTTCTCCTGCCACAGGAGAATGCTGACCTGGCCAGCCAGCTACAGAGGATGGAGAGTTCACTGAGTGTGTTTGCTGAGGAGTACAGTAAGAACCAGCTTCTTACCCATCTGGGACGCATGGCCTTGGACTTCAACCGGCTCTCTTGTAAAGTGCAGAAGAACGAGCAGAAAACAACTGTTCtgcagACTCTTTGTGAACAGCTCAGACAGGAGAATACTGATCTCCGAAATAAGATGGAAGAGGATCTCCAGTACAGGAACCAAGATCTAGACCAGCTGAGGCAGGAAAACTCAAAACTGAAGAAACTGGTCACTGGCTCAGGGGGACAGAAGGCAGGACCACAGCATGGATCTAAGCAAAACGTGATGAAGCAGGAGCTTGTAGGTGTCAAGATGGACGTGGCTGTAGTGCAGCAGACTGGCAAAGCAGTGGAGAAAACCCAGATGAAGACCTGGGACCCAGAAGCATATGAGAAGAAGATAAAGTTATTGGAAAAGCAGAGGGAAGATGTACTGGAGGTGAATAAGCAATGGGATGTACAGTTTAATTCCATGAAGCAACAGTCAGAACAGAagATCACGGACCTGAGACAGAGACTAGCGGATTCCCAGAAGGCCGTGGCTGAGCTGGAGGTGGAGCGGGAGCAGAAACAGCGGGATTATGACAAGAAGCTTTTATTGGCCAAGTCCAAGATAGAGAGTGTGCAGGCAGAGAAAGAACGGCTAATGGCAGATGCAGAACACAAGCTGAAGTACATGCAGGACCAGCTCTTGCCACTGTCCAAGCAGAGGGAATACCAAGATAAGGAGATCCAGCGCTTGAATAGGGCCCTGGAGGAAGCGCTGACCCTACAGTCCACCGCAGCTCCGCAGACACCCGTGTTTGGTAACCATGGTGACGCAGCGATGAACCTCAGGCGACAAGAGCTCCTTACCCAGATTGCAGTTCTTAAAGAGCAGGTGAAGATCTTTGAGGAGGACTTTCAGAAAGAGCGACGTGACCGAGAACGtatgaatgaagaaaaggaggaGTTGAGGCAACAGGTTGAAAGACTGCAGGCTCAGGTGACAACATTGAATAATCAGGGCCAGCATGAAAGACGCACTTCAGACCCCACCTCTGGGTCCGTGAACCCTCCTGCCAGCCCGCCGTTCTTCATGCAGGGTATGCAGGGTGGTCACCAGGGTTTCGACGGCTGGCCCATCCACTATCCCCCCAGGGTAGCACCCACAGACCCTGGAAGAGACTACCTGCCATTCCAGCCAGGGGGTTTTCCTTGGGCAGCTCCATTCCCTCCGCCCCGCAGTCCTAGAGCTCCAGGAGAGACCGCACGACCCCCCCCAGAGAACACAGACCCTTCACCTGGATTTGGGAAGAGTGAGCGACAGAATATTGACCCTGGAAAGCACTAATGTCTCCGCATTGCCTGGAAAAAAGCAATTGTGACTGCAAAAAGGAATTGTACCTTTGGAATAACTGTtggttaaaatgaaagaaaatatagcCAATTTATTAATGTTACTGTATTTAGATAAACTTGGTCTTTTGCTTATGTTTTGTTGACTGCTATTTtactctttaaatatatatatatatatatatatatataagtatgtatAGAAATATCTCTACTATTGTAtgttttactgttgttattattattattgttattattattattattattgtgattattttcaCTGCTTGATTTAATGGGATGTGAAAAGAAAAGTCTGAAATTGAAAGTACTTTTCAGTTACTCTTACAATTCCTAGTTGTCATTTCCTTGCTTAAATGTGAATACTTAAAATATGATTAAGAtcaaaattatttgaattgatttgaaaatataaatcctTGTAGCATCCATAAgatccccccccctccccaaggCCCTGTCATCTTATAAATTAAATccgtaataaaaaaaaatatatgggaaaataataaaaatgcatagatTTATGGGTtgtaaaaagcattttttttttcctaattgtattttgtttgtaaatgtttataacAACATTGTGGAATTTATGTTGCTTTAACCATGTCCTGTTATCTGTGCTATTGTCAAAGAGAGACCAAGTTTTGAAGAAATTATACCtctttataaatgaataaatacataaatgaataaatacatattttcttttaatacattaGGGCTTTATATTTGCAGTTGAACTATAAATCTGCGTTTTCAGAGCAGGTCATTTAATC

Function

GO: NA

KEGG:

id description
K23829 TNIP1, ABIN1; TNFAIP3-interacting protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011426 True 2841 mRNA 0.44 17 23786963 23813716

Neighbor

gene id symbol gene type direction distance location
AMCG00011425 NA coding upstream 11455 23760289 ~ 23775508 (+)
AMCG00011420 NA coding upstream 109687 23663024 ~ 23677276 (+)
AMCG00011418 NA coding upstream 129521 23656670 ~ 23657442 (+)
AMCG00011419 NA coding upstream 163663 23622780 ~ 23623300 (+)
AMCG00011416 NA coding upstream 187751 23592543 ~ 23599212 (+)
AMCG00011429 NA coding downstream 95984 23909700 ~ 23938038 (+)
AMCG00011434 ctnna1 coding downstream 335241 24148957 ~ 24174504 (+)
AMCG00011435 ctnna1,LOC107594945,LOC107750356 coding downstream 396274 24209990 ~ 24242241 (+)
AMCG00011437 NA coding downstream 979656 24793372 ~ 24808824 (+)
AMCG00011439 NA coding downstream 1003863 24817579 ~ 24824029 (+)
G106640 fat2 non-coding upstream 246235 23539365 ~ 23540728 (+)
G106631 NA non-coding upstream 265032 23382282 ~ 23521931 (+)
G106619 NA non-coding upstream 425949 23356734 ~ 23361014 (+)
G106609 NA non-coding upstream 431320 23353628 ~ 23355643 (+)
G106607 NA non-coding upstream 579486 23207246 ~ 23207477 (+)
G106718 NA non-coding downstream 15573 23829289 ~ 23833300 (+)
G106742 NA non-coding downstream 127296 23941012 ~ 23971183 (+)
G106863 NA non-coding downstream 1106135 24919851 ~ 24943678 (+)
G106871 NA non-coding downstream 1125306 24939022 ~ 24940823 (+)
G106874 NA non-coding downstream 1173122 24986838 ~ 24991237 (+)
G106711 zgc:175280,slc7a1,LOC107719755,LOC107702889,LOC107557764,LOC103353344,LOC106563607 other upstream 33961 23748674 ~ 23753002 (+)
G106618 NA other upstream 430404 23356062 ~ 23356559 (+)
G106613 NA other upstream 445198 23341308 ~ 23341765 (+)
G106242 NA other upstream 3419740 20361208 ~ 20367223 (+)
AMCG00011365 LOC108438827,LOC108243066,LOC107376386 other upstream 3447638 20296011 ~ 20339325 (+)
AMCG00011430 dctn4,LOC107749746,LOC106604160 other downstream 22103 23835819 ~ 23844911 (+)
AMCG00011455 unc5a,LOC107677380,LOC107653334 other downstream 1794270 25607986 ~ 25662179 (+)
AMCG00011476 NA other downstream 2542451 26356167 ~ 26360775 (+)
G107202 NA other downstream 2956722 26770438 ~ 26771214 (+)
AMCG00011488 NA other downstream 3004336 26818052 ~ 26842792 (+)

Expression


Co-expression Network