AMCG00011429


Basic Information

Item Value
gene id AMCG00011429
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 23909700 ~ 23938038 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011429
ATGGAGTTGCATCCTGACTCTGTTGGTGGATCTTCCTCTCCCGCTGAGGAAACAAGTGATGACAATGCAAAATCTGACTTACCTCTGCCAAGCTGTGGCCTACCTGGAGATGTAGAGAGTCCTGCTTTGGAAGAGGGCTTGAATGACGCCAAACGAAACCCAGTACAGCCTCAAAACAGGACCTGGTCTCCAACAGTGTCCGAAGGCGAGCAGGACAGAAAAGTGCATCGACCAGTCAGGCGAGGAATGAGCTGGACGGCCCCCAAGTCCACAGCTGCCGGCTGGTCCAAGAACACCAGCCAAGGAGAGCAGACACCGCTGGTTGTGTCAGAGCTGCCCTGGAAAGACGGGAGCTCTGGACAGAACAGCACCGGAGACGGGGGGAGCCAGGAGCCGGAGTGGAAGCTGGTGCAGGCGAAGCCAGTGGTGGTTGCCAGGGCGAATaaacaaggaagaaaaacaaATCTTTCCAGAAGTGCCAGCTTATCTGAGAAAGAGCTAAAAGAAGCAAGAGATCGAAGCCAGATCATAGCTGCCCAGCTGACTGTTCCCACCAACACCAACTCCAGGGGAGTGCAGCTTTTTAACAGGCGTAAGCAACGGGTGAATGCCTTCACTCTTGTCAGCTTTGGAAAAGGCATCCAGCAGGAGTCACTGGGGAAAGAGCAACAAGGACCTGTTGGCCAAAACACTGTAACATGGGAAGAAAAGTGCACTGAAAGCAAGAACCTAGAACTAAACTGCAGTGATAACAACTCAAAGTTCAGCTGGTGTTCAGGACAAAGAAAGCATACAGGGAATAACATTATGGAGGAGCAAGTTGAGAATATCCAGGAAGTGGATAATGTAGTTACCAGTTTGAAAACTTCAGAGTTCCTGCCTGAGGATGAGATAGATGAAGAACTGGCAGGAGAGTTCTTTCCTGAGGATTCAACCTCAAACAAAGGCGAGCCTCCAAATGAGATTTTTAATAACAGTGCCGACAAGCCAGCTGATGTCATGGTGGTAGCGGAAGTCAATGGGCTGTGCAATGCCTCCATAACCAAAGCAGGAGAAAATGGATGTTCAAGCACCCATAATAGTGTAGAAGTCACCTTCCCTCTGTCTAAACAACCTCCTGCAATCATAAACCGAACGGCAAGGCCATTTGGGTCACCCGCCATGGTCTGCTCACCGGAAGCCAGAAGTCCAGTGATGGACCATCCATCACCGCCTTCCTTTTCAGCACCTCCTCAGCCAGCCTTTTCAAATCCTCCTCCAGTGTCGCGGGTCATCTCGCCTTCACCATACGTGCCTCAGTGCACAGCGAATGCAGACACCAGACACACATATGTTCCACAGTACAGTAACGAGAGCAAGCAGCAAGTGCACTTCAAAACAGGCATTCTGGATGAAGGCAAGGCACGCCGGGCTGCCAGAAAGTCCATGTTCACATTTCAAGAGAAGCCCAAAGTTGCCCCAAATCCAGAGCTTCTGTCCTTGGTACAAGGAGTGGATGAGAAAAAGAAGCAGAAACCACCAGGCGAGCACACACATGATGAGGAACTCTTAGCTCTTGGAGCAGAGGCTTCTAACTTTCAAACCAAAGCAAATTCAGAGGAAACTAAAGTGCCTGAATGGTCTACATGCTTGAAGAGCTCTGGAGTCAGGGTTAGGGCTGAATCCAAACCAGCCCAAGGCCTGACAAATGTAGCAGGGAAGGGAGCAGAGCTGTTTGCGAAACGCCAGTCTAGGATGGAGAAGTATGTAGTAGAAGCCCCATCTGCGGTAGGCAGGTGCCCCTCCCCAACTATGTCTCTTCCCCCCTCTTGGACATTTCCATCAAATATGCCAGGCCGCATTAAAGCCATTGCCAGTTCTTCTAATGTCGGTGTGCAACCTTCAAGGACATCCAAAGCCATACCTGCCTCTGGTTATAGAAATGAGGAAAGTTCTGTTATGGAGAATGGCTGCACCAAGAAAGAGATGGATATTGCGAAGCATCAGCCCTATCAGCTGAACTCGtccctgtttatttttaacccaaCCAAAGACCCCATGCGATCTTTACCCAAGGCAGCACCGCCTCCTAAACCCATGGTTCCAGATAAGGCCTACTCAAGGCAGACATCTCTGCCTATGTCTCCACCTTCCCCTTCTCCACTCTTCAACTGCCCGGCACCCTTTAGAGCAACCAAAGCCCTCTCTCCGCAGGTACTGTCCAGACCACTGAATGGAGTTGGATCTGTGGATTTCAGATCAAGTCATGGAGCTCCTCCAGAGCCGGAAGTGGCTCGTATAATGTCTCCGGCATCTCCTTTATCACCAAGACCTGGTGTCCAAGCCCCAAGACCTTCATTCTCTGCCAAGAAGGCAGGAATCGAACCTCAGATTCGCAGAGACTCTCTCCCCATAGCAACCACCTGGACCCCCACTCAGCCGAGACGCTTCAGCACCCCAGAAGGGCCGATCAATGTGGTCAAGGCACACTCTGCCATGGAGGTGCAGATGACCACTCGTTCCCCTTACCCCTCAGCTGGCTCGTCTCCACTGTCCCCTCCTTGGGAAGGAAAATGCCAGTCACCCACCAGCCAGGACATCAAGACCAACCACCGCCTGCTGGCCAAGAACATCATCAATGCTGCCCGGCGGAAAAACAGCCCCTCTCCGGGCGGATTAAACGTGCATGGATCATCCGTGTCTCCTGTAAGCTCCTACATAACCCATGGTCACCAGCCGCTTAGTCCCTCATCCTTCCAGTGCAGAGCTTTAGCCAACCAATCTCCTACATTCATGAGTCCTCCACCAACTCCGACTAGAATGATCAGATCCCCAGTGCGTTTGTACACAACCCGGTCTCTGACTGACTCAGACGCCTCGATCGAGTCCGAGGATTCAGGGCTGAGGTCTCCCAGCTCTGGCACGAAATCTCCTAGCATCCGGAGCCATAATACCTGCCCTCGCGGCTGGAATGGTAGTTTGAGGATTAAGAGGGGAAGCATCCCAGCAGATCTGTAGGAGGTAGCTGCAGTGATTGTCGATGGGCAGGCCCAGAATAAAAACTTTGAGAATCATTCCATTAAGGAGAAAGAGACCAACTAACCTATAGAAGCATTCCACAGCTACAAACTTATAAAAAATGGGAATGGAAAATGGAAGCAAATCATACAAAATGGTTTCTGATGGCATTTTTTCAACTGTCACAAGAAGGGCCCATTTTCAAGGGCAAATAGTATTAAAACATggacttttttattattttcattttattctaaCTTGTTTTTTACACAGGTTTCTTATCTTATTGCTTTTGCCAGCCTAAACACCTTTCACAAATgttctttgttgtgttttcctttttttgtaagTTATATTTTGTGCAATTTTACCAGGTGCTTGAGCAATGTACACTTAGCAACTTTTTAACTAAGAAAGACATTTGTAAGTTGGGTCGAGTGACTGGAAGTCGGAGGAGTAAGATAGGGAAGGTTCAGGAAGTTGTGTTTCTGGAATCGATCACAGATTTGGTCAGATATTAGAAATATTCAGATAGAAGGGTTCAGCTTTGTTGATGTCATAAATGCACTTTGATGATGGACTGTAGTGAAGATTTAATACCTgaacacattattatattttcttcttagATGTGTTTAAAGACTGGGGATGATTGCCTTTACATTCCTATACAAGTAAAACTGGTATTTGCTTTCTAGACCAATAATGTCACCTTTACACTTTTCAAGCATTCCGCTGCCTCATATTTAGTTCAAACATAACAAGAAATAATCTTGTTTTACTATAGCAACAGGTATTCTATGACTGGTATTGAATTCTTATAATGGTGCAATAATCCAtatattactttattgtatatatttttgcataacaATCAGATTGTGACCAGAATGTCTTAAACGAaccttttgtaaatgtttgtaagTCTCAACAAGTGAAATGATTGTTGATTGGTAAAATGTGTTCCCCAATATGCTTGTCATGGTTAGAGAACAacaatttctgcaataaaacCTTAATTTTCTCAGATAAAATTAAGAAGATAattcaaatcacattttgtaatgtttgcagTAGATCCTTATAAACACAACTAGCCAAAGGTGCCTTCATACAAAAATTGTGACATTCTACTTTTATAGATGCAGTACAGAATAATAAATTGTACTCTGAAACCTCAAAACCTAAAGGAGTCACACCGTTGAGATTGAATGCAAACCAGACCATATGaatgtttgaaaaatgaataGATGCTTTGATGTAAGCCTGATATTATAATGTGGTTTGAGCTTGACAAAGTAAGAAGTACAGGGGGAAAAAGGTTAGATTGTTCAAGGTCTTTATTAGACACTCATGTAGGGTAAATggtaatgcattattaatagaATGAAGTTTGCTAAGTGACCCTATATCATTTCCCTAAAAGCAAGACACTATTACAGTCTATGAGAGGACATTTAGCACTATAAGGATTTCTGGGCTCAGTCACTGTAGCTCAATTATACACTGTCATGCAagtcaatgttttcatttttttgcctATATTGTTTATCTTTAAAGCACTGCTTTTGACTGGAATGGATTTTGCATTGCATCTGAAAGAGAATGATTAGACTGTAATAACAGATCGGGATTTCTCAGATATACGAATATTGCATATGTAATCTTTATTATGACTTGGGATATTATTACTGGTTACTCTTTTGTCTTTAGAAACATGTTCTCTACATGTAGTTTGCACCATTTTTGAAACCCAAATCTGGATTGTCCAGAAATATATTGACAGTTAACCTGCACTCATAAATCTGTAAACCATAGCCTTCAATAAACTATTTGTTAGAGCATATATCGCATTACATCGAATGACAACAATCTACAATTCACCTTGAGTTcgtattcatattttgtatcaggtCTTAAAACACCAGGCAGACCATTCTTCCCTTACACCAATGACATCTTCATCAGCAGATTTTTGCCAAGTGATATTTACGGAACGTTTGATTGATGACCTACCAGCTGTTTGGTGACTTTGCAACTCGGACATGGATAACTTTTCATTGTCACGGTCACGTCTAAATCTTGAGCTGGAGTTGCAGTCCTGTTCATTAACCtctattcaaaataaaatgtgtaaaaaaagaTCTGATCATGTATTGTTCCCCAATAGGTTTTTCCATCGAGGGTTGTGTAACATTCCCATTGTTAATGCTGTTATTTatagtaacaacaacaacaaaacttgCTTATAAAGTATTGATGCTCAAATCAAATGGCGGCTGTTGTCATTTTTGGtgctacacaaaacaaattaaaaatactgtaattctCTCTGTATTCTGCCTATTCCTGGTTTCCAAGCAAAGACAAAAACctaaaatcaaaactaaaactGCACATCGCACATCATACTGTGAAAATCAGACAGAAGTCTTTGGTGTGAATTAATACTAAATGTTTCCTATATGTTGATTTACTATTACTATGTATTTGTTCCCATTTGACCTGTATTTATTTGCCTTGTGGTCTCTTCTGTAACCTGTGCCCAGCTAGTAAAAGGATACCCCACGGTGATTGATGTCACATATAGGCAACAACTTCTTAAGGTGATGAAGGCTCAAGCGGCTGTGATTATATTACTTTTATCTTTCCATCTGCATGCAAAAGattaaagcattacaattaAATCCCCTCATAGCTGCTTAAGACTTCCTTGCCTTGAGCTGTTGCACAGTAAAGTAATTTAATCGCAGTATGGTGTGCTGGAAATAAGCattgcatatacatttaatggaaaaaagtaaCTTTCCATCATAGCTTGTAAATTAAACTCTGcttaatgtatatattgcaaGGGGGGATTGCCTTTGGTGCTTAAAGCCTAATGTTTAACATGTGAGAAAccaaacagatttaaaatataaaagctaatttgtttatgtttaattagTGGATGAGCTGTGGTAGAAAGGAAACGATGCGTACATTGATTAAATCTTTTTCAAGCCATGCAAGTCTTCCTGGATAAATAATTCTGCTTACTTCATAATAGTAGTAATTGTCatcataataatatgtattgctTTTGCAGATCTAAGAAATGCAGTTATGTGGATTCCTGTATTTCTGAAATGCCCTTGTATTCCTTTTAGTGttctattttttgtaataaatgtaagaTTCACTCCATAATCTTGATCACCAATTAGTTAAATAATTACTCACAATTACCACTTGATTCCAGGTCTTTAGTCCTTGCAGATTTGAATTTGACAGTACAAATGCAGGGCTACGGGCTCCCCAGAACCAGGTTTGTGTATCACAACACTaagttattttttctaattattagAAAGATTTGAAAGTTTAAAGACACTGATCAGAAACTGGTTCAGGAGTTGATGATCACTTCTATACCACTATCTAGatcaggggtggccaaccctgttcctggagagccgcaatcctgcaggttttccaggtctctctaaattaccaatcaatggatattgatcacagggacattttgcctaattaagacccataattggttcaattaagcagttaacgatctggataaaacaaaaacctgcagaccctgtggctctccaggaccagggttagccacccctgatcTAGACACCCAAATCACTTTTCATGTTGTGGGCTCCCACCTCCACCACCGCCAATGTATAGCACCCATCTGGATGGTGCAACAGCTGTCAAAGTACAATGGTATGCTCACCACACATCACCTACTTGGGCAGAGAGCAATAAATgccaattatttatatttttagggGCTATTCTTAGGACCATAGTTGGAATTGTGGCCAGGACATCTGGGTAACACCCCTACTCTTTTTTAGAAATGCCCTTGGATTTTTAATGACCACAGAATGCCAGAatctcatctcatctcatctcCTCTCACTTATTCAAAGCAGTGTCCACATCCCTGTACTGGGGCATTGAAATTCACACAGACCATGTCCCATTGGTCTAATGTTTGCTTATTAATCCTAAATGCGTTGgtaatgtatatttactttacttttaatgatagatgtatttatttatttgtaggctattaatatatataagctacttcatgtaggcctatatagaGTGCTCAAATTTAAATCAGTGATGGGTTACACATTGGGATGAGTCGCACTGTACCGTTAATTGTTTCATGGACcattaatattttctttgtggTATTTCacagttaatgttttaatttgctctACTTGATTATATTATCTTAAAGCGCTCTGTGGTTACTCTGCAAAGGGcgctacacaaataaaaaaatgattgattataGCTTATTATGCACCATGGGAattcttctgtttattttttatgcttaGCCATCTCCTGTATGAAGTCTGCTCGAAACATCccagtttcttttcatttctcttcCCAGTGAAGTCCTATGTAAAGTCCTCGTACCGCCATTAACTGATCAATCTGCTGAAGTGCGTGGATAACTTTTGGCAATTCATTTGTAcacttgaaatgtgttttaagacaTGATACGGCTAATTTATTGTGGTCATGGTATTTTCCGTTTCATGTTATGTGCTGTTTTGCAATAAAGCGCAAATGTCTatctgcatgttttattttttccagtgttATTCATGTACTGCTGCCCAGGACGTTTTTTGGCTGG

Function

GO: NA

KEGG:

id description
K21112 SYNPO; synaptopodin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011429 True 7681 mRNA 0.42 3 23909700 23938038

Neighbor

gene id symbol gene type direction distance location
AMCG00011426 NA coding upstream 95984 23786963 ~ 23813716 (+)
AMCG00011425 NA coding upstream 134192 23760289 ~ 23775508 (+)
AMCG00011420 NA coding upstream 232424 23663024 ~ 23677276 (+)
AMCG00011418 NA coding upstream 252258 23656670 ~ 23657442 (+)
AMCG00011419 NA coding upstream 286400 23622780 ~ 23623300 (+)
AMCG00011434 ctnna1 coding downstream 210919 24148957 ~ 24174504 (+)
AMCG00011435 ctnna1,LOC107594945,LOC107750356 coding downstream 271952 24209990 ~ 24242241 (+)
AMCG00011437 NA coding downstream 855334 24793372 ~ 24808824 (+)
AMCG00011439 NA coding downstream 879541 24817579 ~ 24824029 (+)
AMCG00011438 NA coding downstream 943318 24881356 ~ 24886761 (+)
G106718 NA non-coding upstream 76400 23829289 ~ 23833300 (+)
G106640 fat2 non-coding upstream 368972 23539365 ~ 23540728 (+)
G106631 NA non-coding upstream 387769 23382282 ~ 23521931 (+)
G106619 NA non-coding upstream 548686 23356734 ~ 23361014 (+)
G106609 NA non-coding upstream 554057 23353628 ~ 23355643 (+)
G106742 NA non-coding downstream 2974 23941012 ~ 23971183 (+)
G106863 NA non-coding downstream 981813 24919851 ~ 24943678 (+)
G106871 NA non-coding downstream 1000984 24939022 ~ 24940823 (+)
G106874 NA non-coding downstream 1048800 24986838 ~ 24991237 (+)
G106906 NA non-coding downstream 1109486 25047524 ~ 25049147 (+)
AMCG00011430 dctn4,LOC107749746,LOC106604160 other upstream 64789 23835819 ~ 23844911 (+)
G106711 zgc:175280,slc7a1,LOC107719755,LOC107702889,LOC107557764,LOC103353344,LOC106563607 other upstream 156698 23748674 ~ 23753002 (+)
G106618 NA other upstream 553141 23356062 ~ 23356559 (+)
G106613 NA other upstream 567935 23341308 ~ 23341765 (+)
G106242 NA other upstream 3542477 20361208 ~ 20367223 (+)
AMCG00011455 unc5a,LOC107677380,LOC107653334 other downstream 1669948 25607986 ~ 25662179 (+)
AMCG00011476 NA other downstream 2418129 26356167 ~ 26360775 (+)
G107202 NA other downstream 2832400 26770438 ~ 26771214 (+)
AMCG00011488 NA other downstream 2880014 26818052 ~ 26842792 (+)
G107394 NA other downstream 3774168 27712206 ~ 27727867 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003858 BX248331.2 non-coding NC_007122.7 CM002895.2 4187022 ~ 4194697 (-)