G106609


Basic Information

Item Value
gene id G106609
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 23353628 ~ 23355643 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU133373
ATctatctgattttatttttgtatcattcttTTTTGGATGAGATTTTCTGATCTGTTGTCATCCCCAAAATAATGATCCACTGCATGGTAGCAGAATATAAATCCCCAGCTACCTGGAATGATTCATACATACAGTCACACGAGGCGACCTCTCTTTTATTTTAGCTCCATCTGCGTGCAGCATTAATACTCCTGCAAAATACATTGAAGTCTTGAAATAGGTTTTAGATTACAGCAATTCAGAAAACCTCCAATTACAGGGTGTGTAAAACCATATAAAGAGATGTGGTGTTTGTGAAGGACGCTATCCAAGCTTCACGTCCTCTGTGAAATGTATACCATATGTTTcctatttcttttttctctccctcgcTTCTTAACCCCCTCTGTCCATTCGCCCTAGCTGCCTTTTCTCATGTTTATATCACgtgaggagagaaaaaaatccagaGGTTTTAACCAGCCTCaaactgtaaatatgtttttatttgtgtaaatgtcCCTTATTACAAGCAAAGCTTTCTGTATGGCTATGTTGACAGGTTCAGTTTTAGACCTTTCAGTGTAGaccaaaattaaaaacttgtacATCTTAATTGTTATAGAAGGCCAAATTGCAGTTCTTCCAGGGcatttgaaaaaactaaaaacacaaacaaacaaaaaaaaaaaccaaaacaaaccacaacaacaataaaaaaactaaatctgaaaaGGTATATTATTTCTACTCATACTGTATAACTTTATGAGGGTTTTGATTCAGGTTAAAACAAAAGTCAGGTTATTATTTGTAAGTTTGTAAAGGATGGGTTTGAAAAGCAGaaaaaatacacatcattTTAACAACAATCTGATATTTGTGCTTATGCTtctattttaagtgtttatttatttaatgcatgaCTTGTTCACCTCATTGTTTACTAATACCACAGAAGTAGCATACTCAAATTTTTAAATAGGCAGAATTGTATTAATGGTGTTGTAATGTTGTTAATATTTACTATGgcaggaaaaaggaaaatgtaaagatttaaaatgcatgcaaaggCTGTtggtaatttttaaatatttttttattgctgtatagattttttttagatTGCTCACACTTGTGTCAAAGGAGAGTGAACACTTAAGAGGTAGAAAAATTCTCATCCTGCGAGATTCCATCCTCATTTTGTTCATaggaaattaacttttttttatttttaaaaacactcaaCACATGCCCTTCTGGGTAACAGGAAACATAAAATGGTGAATTGACACACAGAGCAGGGCTCGAATTTAAgagctaaataaaaataaataaataaaaacccatTCTTAATGTCTGTTACCACCACCGAAaagtgcataaaacaaaaacaataaaaaagttctaaaagcaagagaaaagaaaatttATTTagaaactttattttagttttacagttGTTTCCTTATTAatgccaaattaaaattaaattcaagccctgattaagtgaaaaaaatatcaaattttgaaaaaaaaacatccacaacATAACCTTCTCAACATACATGGTCCGACAGTCCAACTTAATCCAATCCACCATCCGGCTAAACAACTACCTCTGACTTTTATTACAGGGTTAATTGGCAATAGGTTACATCTGAGAAATGAGCTACTGcttcaaacaaacaagtaaaaaagaACACATCTGGAAAATCATTTACTCAGGTTTTATGAATGATGTTTTGaagtgtgcatgtttttttttgtgattttttttttagtggtaTAGGTAGGTTGATAAACAATGAGATTAGCACCGACATTGCGTTTAATTTCTATGGGTTAGCACCTCGTCCCAATGAAGGTAATGAAGAGTCAGTCATGAGCTGAATTTAGATGACAAGGTCCTTGTCAACGTcct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU133373 True 1904 lncRNA 0.33 2 23353628 23355643

Neighbor

gene id symbol gene type direction distance location
AMCG00011411 glra1 coding upstream 32247 23288041 ~ 23321381 (+)
AMCG00011410 NA coding upstream 90790 23240188 ~ 23262838 (+)
AMCG00011403 thoc3,LOC102780803 coding upstream 514125 22835799 ~ 22839503 (+)
AMCG00011402 si:dkey-280e21.3,LOC107664720,LOC107662031 coding upstream 518801 22819761 ~ 22834827 (+)
AMCG00011407 NA coding upstream 554835 22798038 ~ 22798793 (+)
AMCG00011417 LOC106612256 coding downstream 48213 23403856 ~ 23415142 (+)
AMCG00011416 NA coding downstream 236900 23592543 ~ 23599212 (+)
AMCG00011419 NA coding downstream 267137 23622780 ~ 23623300 (+)
AMCG00011418 NA coding downstream 301027 23656670 ~ 23657442 (+)
AMCG00011420 NA coding downstream 307381 23663024 ~ 23677276 (+)
G106607 NA non-coding upstream 146151 23207246 ~ 23207477 (+)
G106588 NA non-coding upstream 418084 22929129 ~ 22935544 (+)
G106586 NA non-coding upstream 490676 22862608 ~ 22862952 (+)
G106513 NA non-coding upstream 658784 22692737 ~ 22694844 (+)
G106485 NA non-coding upstream 786367 22564099 ~ 22567261 (+)
G106619 NA non-coding downstream 1091 23356734 ~ 23361014 (+)
G106631 NA non-coding downstream 26639 23382282 ~ 23521931 (+)
G106640 fat2 non-coding downstream 183722 23539365 ~ 23540728 (+)
G106718 NA non-coding downstream 473646 23829289 ~ 23833300 (+)
G106742 NA non-coding downstream 585369 23941012 ~ 23971183 (+)
G106613 NA other upstream 11863 23341308 ~ 23341765 (+)
G106242 NA other upstream 2986405 20361208 ~ 20367223 (+)
AMCG00011365 LOC108438827,LOC108243066,LOC107376386 other upstream 3014303 20296011 ~ 20339325 (+)
G106139 LOC108275110 other upstream 3190662 20095229 ~ 20162966 (+)
G105916 NA other upstream 4131207 19222055 ~ 19222421 (+)
G106618 NA other downstream 419 23356062 ~ 23356559 (+)
G106711 zgc:175280,slc7a1,LOC107719755,LOC107702889,LOC107557764,LOC103353344,LOC106563607 other downstream 393031 23748674 ~ 23753002 (+)
AMCG00011430 dctn4,LOC107749746,LOC106604160 other downstream 480176 23835819 ~ 23844911 (+)
AMCG00011455 unc5a,LOC107677380,LOC107653334 other downstream 2252343 25607986 ~ 25662179 (+)
AMCG00011476 NA other downstream 3000524 26356167 ~ 26360775 (+)

Expression


Co-expression Network