AMCG00011402 (si:dkey-280e21.3,LOC107664720,LOC107662031)


Basic Information

Item Value
gene id AMCG00011402
gene name si:dkey-280e21.3,LOC107664720,LOC107662031
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 22819761 ~ 22834827 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011402
ATGGTTATCGAAGAAGTAAGCGTATTGCAGACCCAGCTGGAGATCGAGAAGTCCTGCAGAGAAAATGCTGAAGCCTTGGCCACAAAGCTGAACTGTGAGAACAGGAAGCTGAAGTACCTGAGCTTGAATACAAGGCCCTGTTTGGATGAACTTCTCCCCAGTATTTCAGACTGCATTGCCCTGGAAGAGGAAGCAGAGCCCCAGGACCCGAGTCCTGACCCTTATACCCAGTACCAGCAACAGGTCAAAGATCTGCAAGAGACTGTGAGCACTCTGCTGGATGAGAAGAAACAGTTTGCCTGCCAGCTGCAAGACCAGAGGAGCCAAATCGAAGAGCTGACTGCACGCATTGAAAAGGATCAAGCCGAGATGAAGGAGCTCCACAAGACTGTCGAGCAGCAAAGCAAGACGATCAAGCGGTTCAACAGAGTGTCATTAATGGCTACCCACGAGTACGAGGAGCTGAGAGAGCATCTGGATCTGGAACACAGCCTGAGGCAGAAAGCTGAGACCTATGCACATGAGATGCTGGTCAAACAGAAGGAAGCGAACAGACAGAGCATGATCCTCCTGCAGCAGGCCGACCCCAGCATTCAGCTGCTCAAGGCACTGGAGGACGTGGCCAATGTGACCAAGACCCTGGAGCAGGAGCGGTTCCAGCACCAGCAGAAGGTGAAAAACCTGGAGACGGAGCTCCAAGAGTCCGCCCTCCGCAGGCAGCTGTCCGAACTGCAGAGGCAGTTGGAGCTGGCCGAAGAGGAGAAGCGGGAGGCTGAAGCTCGGATCCAGCAGATGGAGGAGAGGAACAACAGCCTGGAGAGCCAAGTGCAGGGGCTGCTAGACGTGCAGAAAAACCAGGACTCCACCCCAGAGTCGGCTCCGGGGACGGCACCGCCACCAGCCCCACCTCCCGCGCCTCCTCCCCCGCCGCCTCCCCCGCCCCCACCGCCTCCaccgccccctcccccctcgCGCTGCAACCCCCTCAGCTCGCTCATTGCAATAATGAGAAAATCCTCAAAAGGCTCCAAGGGACCTCTGAAGACAGAGCCTGTGGCTGGGGGCGCAGTGGACGACGTGAAGGTGAAAGCAGTGAACGAGATGATGGAGAGGATTAAACACGGGGTTGTGCTGAGACCTGTCAAGGGCCAAGATACCAAGCCTCAGCCCCCTCCCCCAGAAGAGAAACCGCAAGAGAGTGCAATGGATGAGCTAAAGGGCATTCTGGAGAGTGTCAAGAAGAGTCCAAGCAGAGGATTTCCGGAGGTGCTGCCGGGTAAGAAGGACAGTGAACTGGAAGTGATACTGAGGAGGCGAAGGAAACAAGCATGCGACCCTGAACCCGGAGATGACAAGGAAGGTCAAATTAGCAAAGTTTCTTCTTCTGAGAGCCTGAATGCCAGACACAGCTCAGACTCGGGCAAGGAGACGTCTCTGTCCTGCCACGGGGGGAGCGCGCGCAGCTCGCTGTCCGAGAGAGGGGTTCCGGATGTGGTTATAAATGGCTGTTGCGACAGTGAAGAAGTAGAAAAGGGGAAATCGGCCGTGACAAGCTCTCAGGCGAATGGATTTGGCCATACTCTGCTAAACCGCGACAGACAAGGCCTCCAAACCGCAGGTTCACCTGAAGGCCCTAGCCCTGTGAACGGCACTGACGCAGAGTGTTAACCGCAGTGTGAGGCGAGAGTCACAGGGGCCAGGGTGGGGGGAAAGCTGCACAATTTGCACaacatttgacaaaaaaaaaaagtttttttttgtggtactTTTAGATGATTTTGAAGCTTTAGTTTCACTAGGATTTTTTTATGCACATGCTGTATGCTAGTGTGGGTTTGTGTCTGCTTAAGGAATGCACTGTTATGTTTAGTAAAATACTAGAGgaagtttctttctttttggttttataaTCTCTTCTTacactgaaggaaaaataaacatgaagaatcacaaactaacaaacaattaTTAGGCATTCAAATGTAAAAGAACACCCAAGTCccaatatttatttcaggaaaTTGTTGTCAGAGGTACggttgcattattattattataattattatagtcTCTGCTTTGAAAGCTTAGGCTAATACAGTTACATCAGTGTCTATTACTTTTATATTAGAAATCTTGAGACATTTGAAGACAAGATGTTAATTCTTTGAAGAACAAATTCtacacaaaataattagttaaaGCTTAGATGAATATGATCCAATATTCCAAAGATAACACTGactatttaaacaaacaataatatgaTATGAAATGTTAATCATATCACCAGTTTAGTAAATGAAAGGCTTGCAGCTGTGTTGATATTCTTTGGACATGTTTGTGGAATGGGTGCAAGTGTCCTCAGCCTACCTCCTTGCAGACACATCCACTtgcaatctatctatctatccaaaTATTGTACTACAAGTTCTGAAAGATAAGGATGAAAGCTTGAAGAAGAAGTGCAAATGTGAACACGTCTTCCAATGTTCTACCCAAAAGGTGCCTGCACTGCGGTGATCACACGCTGTTCCAGAGGCGCAATCTGTGCAACGTGCTGCGGTTTTTCTCTGCAGACACGAGGTGCTATATATTCCAGCCCAAACAATCATCCCATTGCTGGAATAGAGCTATAGTTATATAGCAAGCCCACTGAGAGGGTATGGACATCAGGGCAATCTCACCAAGACATATGTCATGCACAGGGGcccagcatttatttatttgtatatgcaGGTATAAATGACTGGATTTCATTTTCTACAATACCAAAAGCTAATCAAGCCCAACCAAACAAATCATGTTGATAAATAATCATTCTCACATTACTGGGTGACCAATGCTCCCTTGGTTCTTATGAGGGGCATTTTAGTGGATTGCAACCAAGCTGGGAGAGCTGTTATGACTCCATCATTGCACAAAACACCAAGTAAGCCACTTCAGAGTTATACATGTATGCATATGCTGTCCCATCAACTGACAAGAGAAGCAGAAATTGCTGGAGTCTCATGCATTAATCATGAACTTAATTACTGAAGACCTGcaaacacagatttattttttgcaaacaaCACCCTTTTTGGGGAttctgcattaaattaaattcacagctAGTTCCCGGAAAAAACATGatacatattaaacaaacaaacaaaaaaaacatgcatatttctTTTAGTATGGTCCATAGTGTTGTAAGCTCTAAGCTACTTTCGGCATTTCCAAACATGTTGCAACCAGACTGTAAATGAACAAAGCCTAAATATGACCACTTTTGTTGCTATCTGATGACATGCTATGAAAACTGTATGGtagtggtttgtgtgtgtgactttgCTGGTTCCTGACTACAGTATGTAAAGacataaaagaacaacaacaaaaaaaaaaacctgtcccAATCTTGGGTTTCTAAACCTCTTCACTGCTTTCTCTCATTcatgaaaatctgtttttttaattgcaggaAATAAAGTTTTGGCCTTTTAAGTAA

Function

NR:

description
PREDICTED: shootin-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011402 True 3493 mRNA 0.46 14 22819761 22834827

Neighbor

gene id symbol gene type direction distance location
AMCG00011407 NA coding upstream 20968 22798038 ~ 22798793 (+)
AMCG00011406 NA coding upstream 21932 22797478 ~ 22797829 (+)
AMCG00011405 NA coding upstream 33819 22752650 ~ 22785942 (+)
AMCG00011404 NA coding upstream 69915 22744521 ~ 22749846 (+)
AMCG00011396 NA coding upstream 127956 22669741 ~ 22691805 (+)
AMCG00011403 thoc3,LOC102780803 coding downstream 972 22835799 ~ 22839503 (+)
AMCG00011410 NA coding downstream 405361 23240188 ~ 23262838 (+)
AMCG00011411 glra1 coding downstream 453214 23288041 ~ 23321381 (+)
AMCG00011417 LOC106612256 coding downstream 569029 23403856 ~ 23415142 (+)
AMCG00011416 NA coding downstream 757716 23592543 ~ 23599212 (+)
G106513 NA non-coding upstream 124917 22692737 ~ 22694844 (+)
G106485 NA non-coding upstream 252500 22564099 ~ 22567261 (+)
G106481 NA non-coding upstream 265271 22554259 ~ 22554490 (+)
G106479 NA non-coding upstream 272354 22547164 ~ 22547407 (+)
G106477 smad1,smad5,LOC107598346 non-coding upstream 275326 22544184 ~ 22544435 (+)
G106586 NA non-coding downstream 27781 22862608 ~ 22862952 (+)
G106588 NA non-coding downstream 94302 22929129 ~ 22935544 (+)
G106607 NA non-coding downstream 372419 23207246 ~ 23207477 (+)
G106609 NA non-coding downstream 518801 23353628 ~ 23355643 (+)
G106619 NA non-coding downstream 521907 23356734 ~ 23361014 (+)
G106242 NA other upstream 2452538 20361208 ~ 20367223 (+)
AMCG00011365 LOC108438827,LOC108243066,LOC107376386 other upstream 2480436 20296011 ~ 20339325 (+)
G106139 LOC108275110 other upstream 2656795 20095229 ~ 20162966 (+)
G105916 NA other upstream 3597340 19222055 ~ 19222421 (+)
AMCG00011328 NA other upstream 3702392 19107273 ~ 19117369 (+)
G106613 NA other downstream 506481 23341308 ~ 23341765 (+)
G106618 NA other downstream 521235 23356062 ~ 23356559 (+)
G106711 zgc:175280,slc7a1,LOC107719755,LOC107702889,LOC107557764,LOC103353344,LOC106563607 other downstream 913847 23748674 ~ 23753002 (+)
AMCG00011430 dctn4,LOC107749746,LOC106604160 other downstream 1000992 23835819 ~ 23844911 (+)
AMCG00011455 unc5a,LOC107677380,LOC107653334 other downstream 2773159 25607986 ~ 25662179 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_007307 si:dkey-280e21.3 coding NC_007125.7 CM002898.2 25464681 ~ 25502537 (+)
grasscarp (Ctenopharyngodon idella) CI01000000_16639394_16651227 NA coding CI01000000 null 16639394 ~ 16651227 (-)