AMCG00011403 (thoc3,LOC102780803)


Basic Information

Item Value
gene id AMCG00011403
gene name thoc3,LOC102780803
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 22835799 ~ 22839503 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011403
ataGGTACAATGTTACAACTTGGCATTTATAAACGAGGAGAATCGGTTCTTCCGTGCGCGACACCCCCCCCCGGCTGATGGACGAGTACTTGAGTCCGGCAGCATGGCGTCGCAGTACTACCAGGAGATGCAGGAGAGcttcagaaacaacaacaaaagccgCGAGTTCCCGGCCCACAGCGCCAAGGTGCACTCGGTGGCATGGAGCTGCGATGGCCGCAGGCTGGCATCGGGATCCTTCGATAAAACGGCCAGCGTGTTCCTGCTGGAGAAGGACCGCCTGGTGAAGGAGAATAACTACCGAGGGCATGGGGACAGCGTGGATCAGCTGTGTTGGCATCCCACCAACCCCGACCTCTTCGTCACGGCGTCTGGGGACAAGACCATCCGCATCTGGGACGTCCGGACCACGAAGTGCATCGCCACCGTCAACACTAAAGGGGAGAATATCAATATCTGTTGGAGTCCTGATGGCCAGACTATTGCGGTTGGGAACAAGGACGATGTCGTGACCTTCATCGATGCCAAAACGCATCGTTCCCGGGCTGAGGAGCAGTTCAAGTTTGAAGTGAATGAGATCTCGTGGAACAATGACAACGACATGTTTTTTCTGACCAATGGCAATGGCTGCATCAACATCCTTAGTTACCCTGAACTAAAGCCCATCCAGTCCATCAATGCACATCCTTCCAACTGTATCTGTATAAAGTTTGACCCGACGGGGAAGTACTTTGCCACGGGGAGCGCCGACGCACTCGTTAGCCTGTGGGACGTGGAGGAGCTCGTCTGTGTTCGCTGCTTCTCCAGgCTGGACTGGCCCGTCAGGACGCTGAGTTTCAGTCACGATGGCAAAATGCTGGCCTCGGCGTCGGAGGACCACTTCATTGACATCGCAGAAGTGGAGACGGGAGAGAAGCTATGGGAAGTGCAGTGCGAGTCGCCAACGTTCACGGTGGCTTGGCATCCTAAAAGGCCGTTGCTGGCATATGCCTGTGATGACAAAGATGGAAAATATGACAGCAACCGGGAAGCGGGCACAGTCAAGCTCTTTGGGCTGCCCAACGACTCCTGAAGAGTGGCATCCGAGCCCTGGCTGTGTGCTGGACCAGTCCTcttcagttttgtgtgtgtgtgatgaaatTGTTATAATTCACGAGACTGTAAGCCAGTGATTGAAACCATCTGTTAATGCCTCTCTTTCAGTGCCCAGGCCTCTCTCGTTTTGTACAGATATGGCATCTCTTTCACCTCGAAGAGTCTTTCACCTTTAATGAGAGCACTGAATAAACTAGGAAACTGTGACGAGCAAGTGTGattttctgcaaaaacaaaattagacAGTGGGGCACTAAAGTGATGAATAAACATGAGTACGTTAAGCTTAACTACATCCCCAGCTGCGTGTAAAATGTCTGTGTTGATCCTTGACGTTGACCAGTTGAATTCCCTTAATTCCGGAGAAACATGAAAAAAGGATAAGATGaactgttttctttaatgttgtgaataTCTGCAAACTGTTTATGTGAGACACAGGGATTCACTAGAGTTTGCAAACATGTTTGATGAAATGGAGAAGTCTGAggtcttattttgtttaataggttttgtttttaccagTAGGTGGCTCTATTATTCCACATCAGCCCTTCAGAGccagctgtttttttcttgtactgtatataaatgttcttgtttttgcacagtgcattataaaatacattttcgtaccatattttgtttactgtgtatatattttgcaatacaattaaaaagactGAGAAGTAAA

Function

symbol description
thoc3 Predicted to be involved in mRNA export from nucleus. Predicted to be part of THO complex part of transcription export complex. Orthologous to human THOC3 (THO complex 3).

NR:

description
PREDICTED: THO complex subunit 3

GO: NA

KEGG:

id description
K12880 THOC3; THO complex subunit 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011403 True 1789 mRNA 0.48 6 22835799 22839503

Neighbor

gene id symbol gene type direction distance location
AMCG00011402 si:dkey-280e21.3,LOC107664720,LOC107662031 coding upstream 972 22819761 ~ 22834827 (+)
AMCG00011407 NA coding upstream 37006 22798038 ~ 22798793 (+)
AMCG00011406 NA coding upstream 37970 22797478 ~ 22797829 (+)
AMCG00011405 NA coding upstream 49857 22752650 ~ 22785942 (+)
AMCG00011404 NA coding upstream 85953 22744521 ~ 22749846 (+)
AMCG00011410 NA coding downstream 400685 23240188 ~ 23262838 (+)
AMCG00011411 glra1 coding downstream 448538 23288041 ~ 23321381 (+)
AMCG00011417 LOC106612256 coding downstream 564353 23403856 ~ 23415142 (+)
AMCG00011416 NA coding downstream 753040 23592543 ~ 23599212 (+)
AMCG00011419 NA coding downstream 783277 23622780 ~ 23623300 (+)
G106513 NA non-coding upstream 140955 22692737 ~ 22694844 (+)
G106485 NA non-coding upstream 268538 22564099 ~ 22567261 (+)
G106481 NA non-coding upstream 281309 22554259 ~ 22554490 (+)
G106479 NA non-coding upstream 288392 22547164 ~ 22547407 (+)
G106477 smad1,smad5,LOC107598346 non-coding upstream 291364 22544184 ~ 22544435 (+)
G106586 NA non-coding downstream 23105 22862608 ~ 22862952 (+)
G106588 NA non-coding downstream 89626 22929129 ~ 22935544 (+)
G106607 NA non-coding downstream 367743 23207246 ~ 23207477 (+)
G106609 NA non-coding downstream 514125 23353628 ~ 23355643 (+)
G106619 NA non-coding downstream 517231 23356734 ~ 23361014 (+)
G106242 NA other upstream 2468576 20361208 ~ 20367223 (+)
AMCG00011365 LOC108438827,LOC108243066,LOC107376386 other upstream 2496474 20296011 ~ 20339325 (+)
G106139 LOC108275110 other upstream 2672833 20095229 ~ 20162966 (+)
G105916 NA other upstream 3613378 19222055 ~ 19222421 (+)
AMCG00011328 NA other upstream 3718430 19107273 ~ 19117369 (+)
G106613 NA other downstream 501805 23341308 ~ 23341765 (+)
G106618 NA other downstream 516559 23356062 ~ 23356559 (+)
G106711 zgc:175280,slc7a1,LOC107719755,LOC107702889,LOC107557764,LOC103353344,LOC106563607 other downstream 909171 23748674 ~ 23753002 (+)
AMCG00011430 dctn4,LOC107749746,LOC106604160 other downstream 996316 23835819 ~ 23844911 (+)
AMCG00011455 unc5a,LOC107677380,LOC107653334 other downstream 2768483 25607986 ~ 25662179 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000000_16628234_16631045 THOC3 coding CI01000000 null 16627697 ~ 16631814 (-)