AMCG00011411 (glra1)


Basic Information

Item Value
gene id AMCG00011411
gene name glra1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 23288041 ~ 23321381 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011411
TTTGGCAGCCTCAAAGGAAGCCGCAGCTCGAAAAGTTACCACCCCAATGCCCCCTTCGGAATTCTTGGATAAACTCATGGGCAAAGTGTCTGGGTATGATGCCAGAATCAGACCCAATTTTAAAGACCCACAGAGCTCCAAATCAGAAGCTTCTCACAAGAAAGGTCCCCCTGTCAATGTCACGTGCAACATCTTTATCAACAGTTTTGGATCCATTGCAGAAACCACGATGGATTACAGGGTCAATATTTTCCTGAGACAGCAGTGGAATGACCCCCGATTGGCCTATAGTGAATACCCAGATGACTCTCTTGACCTGGACCCCTCTATGTTGGACTCCATTTGGAAACCAGACTTGTTTTTTGCCAATGAGAAAGGAGCCAATTTCCATGAGGTGACTACAGACAACAAGCTGCTACGGATTtctaaaaatggaaatgttctTTACAGTATTAGAATAACACTGATCCTCGCCTGCCCGATGGATCTGAAGAATTTCCCCATGGATGTGCAGACCTGTATCATGCAGCTGGAGAGCTTTGGATACACCATGAATGACCTCATCTTTGAATGGGATGAGAAGGGAGCTGTGCAGGTGGCAGATGGACTGACCTTacctcagtttattttaaaagaagaaaaggatTTGCGATACTGCACCAAGCACTACAACACAGGGAAGTTTACCTGTATTGAGGCTCGTTTCCATCTGGAGAGACAAATGGGCTACTACCTGATCCAGATGTACATTCCCAGTCTCCTTATCGTCATCTTGTCCTGGGTCTCCTTCTGGATCAATATGGATGCCGCTCCTGCTCGAGTGGGCCTGGGAATCACCACTGTGCTCACCATGACCACTCAGAGCTCTGGTTCCCGGGCCTCCCTTCCAAAGGTATCTTATGTGAAAGCCATTGACATCTGGATGGCAGTGTGCCTGCTTTTTGTGTTCTCGGCCCTGCTGGAGTATGCTGCTGTCAACTTCATCGCCCGACAACACAAGGAGCTGCTGCGCTTCCGAAGAAGGAGGCGACACCACAAGGATAAACATATAAAGTCTCTCATCCAT

Function

symbol description
glra1 Enables extracellularly glycine-gated chloride channel activity and glycine binding activity. Acts upstream of or within several processes, including central nervous system development; regulation of neuron differentiation; and response to amino acid. Is integral component of membrane. Is expressed in brain; hindbrain; and spinal cord. Used to study hyperekplexia. Human ortholog(s) of this gene implicated in hyperekplexia 1. Orthologous to human GLRA1 (glycine receptor alpha 1).

NR:

description
PREDICTED: glycine receptor subunit alpha-1 isoform X2

GO: NA

KEGG:

id description
K05273 GRGLCN; glutamate receptor, anionic

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011411 True 1066 mRNA 0.48 9 23288041 23321381

Neighbor

gene id symbol gene type direction distance location
AMCG00011410 NA coding upstream 25203 23240188 ~ 23262838 (+)
AMCG00011403 thoc3,LOC102780803 coding upstream 448538 22835799 ~ 22839503 (+)
AMCG00011402 si:dkey-280e21.3,LOC107664720,LOC107662031 coding upstream 453214 22819761 ~ 22834827 (+)
AMCG00011407 NA coding upstream 489248 22798038 ~ 22798793 (+)
AMCG00011406 NA coding upstream 490212 22797478 ~ 22797829 (+)
AMCG00011417 LOC106612256 coding downstream 82475 23403856 ~ 23415142 (+)
AMCG00011416 NA coding downstream 271162 23592543 ~ 23599212 (+)
AMCG00011419 NA coding downstream 301399 23622780 ~ 23623300 (+)
AMCG00011418 NA coding downstream 335289 23656670 ~ 23657442 (+)
AMCG00011420 NA coding downstream 341643 23663024 ~ 23677276 (+)
G106607 NA non-coding upstream 80564 23207246 ~ 23207477 (+)
G106588 NA non-coding upstream 352497 22929129 ~ 22935544 (+)
G106586 NA non-coding upstream 425089 22862608 ~ 22862952 (+)
G106513 NA non-coding upstream 593197 22692737 ~ 22694844 (+)
G106485 NA non-coding upstream 720780 22564099 ~ 22567261 (+)
G106609 NA non-coding downstream 32247 23353628 ~ 23355643 (+)
G106619 NA non-coding downstream 35353 23356734 ~ 23361014 (+)
G106631 NA non-coding downstream 60901 23382282 ~ 23521931 (+)
G106640 fat2 non-coding downstream 217984 23539365 ~ 23540728 (+)
G106718 NA non-coding downstream 507908 23829289 ~ 23833300 (+)
G106242 NA other upstream 2920818 20361208 ~ 20367223 (+)
AMCG00011365 LOC108438827,LOC108243066,LOC107376386 other upstream 2948716 20296011 ~ 20339325 (+)
G106139 LOC108275110 other upstream 3125075 20095229 ~ 20162966 (+)
G105916 NA other upstream 4065620 19222055 ~ 19222421 (+)
AMCG00011328 NA other upstream 4170672 19107273 ~ 19117369 (+)
G106613 NA other downstream 19927 23341308 ~ 23341765 (+)
G106618 NA other downstream 34681 23356062 ~ 23356559 (+)
G106711 zgc:175280,slc7a1,LOC107719755,LOC107702889,LOC107557764,LOC103353344,LOC106563607 other downstream 427293 23748674 ~ 23753002 (+)
AMCG00011430 dctn4,LOC107749746,LOC106604160 other downstream 514438 23835819 ~ 23844911 (+)
AMCG00011455 unc5a,LOC107677380,LOC107653334 other downstream 2286605 25607986 ~ 25662179 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000049_05664017_05705638 GLRA3 coding CI01000049 null 5663752 ~ 5705638 (-)