AMCG00011476


Basic Information

Item Value
gene id AMCG00011476
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 26356167 ~ 26360775 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011476
ATGTTAGAGCAGAGGTCCGTCGATCCAATCCAAGCCCTCAGAGAAcctcACTGTGAGGAGTACTCTGATGGGATTTGCTCCAAGGAGTTTGATCCTGTGTGTGGGACAGACGGCAAGTCCTACAACACTGAGTGTGTGCTCTGTATGGAAAACAACACCGCAGACCGGGAGGGTTCCCAGCAGGCCGGCAGCGTCGAGGGCTAA
>TU133992
agagagacagagagcgacTCACACCTGCACAGTGCCACACATAACTCAGAAACATCCAGACCCAACATGAAGCTGACTTTCCTGGTCCTCACCTCAATGCTCATCTATCTTTCTGGACTCATTTCTGCTGATCCACCACACGGACAACCCAGGGAGcctcACTGTGAGGAGTACTCTGATGGGATTTGCTCCAAGGAGTTTGATCCTGTGTGTGGGACAGACGGCAAGTCCTACAACACTGAGTGTGTGCTCTGTATGGAAAACAAACGCAAATCACAGCATGTGTTAGTCAAACATCAGGGGGAGTGCCGGAGCAGACCCGCCCCTGTCTGAAGCCCCCGTCCAATCAGCACCGCAGACCGGGAGGGTTCCCAGCAGGCCGGCAGCGTCGAGGGCTAACCTGTAGAATGAGCCAAGGGCAACAATAAACTAATTTAGCTGGCCATGTTGTCTATGGCTGTCTTTCCTGCACTGCTGCTGGAAGATGTCCACCCCTCCAGGCTAGTACAGGCATTGACCGAGAAGgcactataa

Function

GO: NA

KEGG:

id description
ko04974 Protein digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011476 False 204 mRNA 0.55 3 26358865 26360640
TU133992 True 534 TUCP 0.53 4 26356167 26360775

Neighbor

gene id symbol gene type direction distance location
AMCG00011472 fbxo38 coding upstream 91640 26245927 ~ 26264527 (+)
AMCG00011471 fgfrl1b,LOC107740189,LOC107593239 coding upstream 114140 26240373 ~ 26242027 (+)
AMCG00011473 hspa9,LOC106604950,LOC106611979 coding upstream 156818 26189132 ~ 26199349 (+)
AMCG00011467 NA coding upstream 220389 26127315 ~ 26135778 (+)
AMCG00011468 LOC103355626 coding upstream 243313 26081951 ~ 26112854 (+)
AMCG00011483 hnrnpa0,roa0,LOC107598338,LOC105905838,LOC107567479 coding downstream 27519 26388294 ~ 26397982 (+)
AMCG00011478 NA coding downstream 41190 26401965 ~ 26409373 (+)
AMCG00011477 klhl3,LOC106604937,LOC106611969 coding downstream 52526 26413301 ~ 26435458 (+)
AMCG00011491 LOC101077011,LOC100136477 coding downstream 549576 26910351 ~ 26923941 (+)
AMCG00011490 NA coding downstream 597367 26958142 ~ 26969283 (+)
G107098 NA non-coding upstream 63720 26277374 ~ 26292447 (+)
G107084 NA non-coding upstream 153548 26199950 ~ 26202619 (+)
G107004 ergic1 non-coding upstream 467329 25882692 ~ 25888838 (+)
G106994 NA non-coding upstream 560555 25795413 ~ 25795612 (+)
G106973 NA non-coding upstream 635581 25698252 ~ 25720586 (+)
G107126 NA non-coding downstream 26973 26387748 ~ 26387984 (+)
G107128 NA non-coding downstream 86427 26447202 ~ 26451575 (+)
G107321 NA non-coding downstream 1106629 27467404 ~ 27468567 (+)
G107331 NA non-coding downstream 1136552 27497327 ~ 27501442 (+)
G107382 NA non-coding downstream 1253186 27613961 ~ 27615738 (+)
AMCG00011455 unc5a,LOC107677380,LOC107653334 other upstream 693988 25607986 ~ 25662179 (+)
AMCG00011430 dctn4,LOC107749746,LOC106604160 other upstream 2511256 23835819 ~ 23844911 (+)
G106711 zgc:175280,slc7a1,LOC107719755,LOC107702889,LOC107557764,LOC103353344,LOC106563607 other upstream 2603165 23748674 ~ 23753002 (+)
G106618 NA other upstream 2999608 23356062 ~ 23356559 (+)
G106613 NA other upstream 3014402 23341308 ~ 23341765 (+)
G107202 NA other downstream 409663 26770438 ~ 26771214 (+)
AMCG00011488 NA other downstream 457277 26818052 ~ 26842792 (+)
G107394 NA other downstream 1351431 27712206 ~ 27727867 (+)
AMCG00011519 NA other downstream 2508367 28869142 ~ 28876355 (+)
G107741 NA other downstream 3336826 29697601 ~ 29699419 (+)

Expression


Co-expression Network