G107331


Basic Information

Item Value
gene id G107331
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 27497327 ~ 27501442 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU134242
cTTGACAAGTCTAggatattgtaattgtaatgaaCTATTAACATTATATGGATCATATacagctatttttatttatatggctTTATGGAATTTTGTCCTTTTCTGCACCCAGACATCATTTGCGGTCTACTTTTAAGCCAATAGAAGTGGACTCAAGTAGAATATGACCTCACCCTTTTAAAATGGGCCGATACCATTCCTATCCTTAGTGAAAAAGTGTGACACGCAAGAACAGTAAAAAGGCATGCCAGCTGCTTAGCAGAGATTGTAGTAAAACGTAAGTAGGCTGACACACAGGGCTCCGATTCATAAAGAATTAGCCTCTTTCAAAATGTACGGGTCTGCAAATGCTTTATGGAAAGGGGCCCCTGGGAACTTGTGCACACAGACCTCTCTCTTCACATCCTCTCAGAGGATTATGGACTAAAGTACAGGCTCAGAAGATGTTTTGGGGTTTAAAGTAAACGCTTCAtaagttattaatcaattatcaGATCTACAGCCTCCTTTTAACCCTTAACAAAGCCCAcgataataaaagcaaaaataaaataaaataaacaaatccttaAATTTTAAAGATTCCAACCAtgataacacaaaaacaatcaaacaaacaaaaaaagcacgaAGACAATTGGAAAATCCAGCAGAGATGgtagaggggagagggggataaaaatcacattttagatCTCTGCTGTCAGGGAGTTGAGTAactgatgggggggggggttgggctTACAGAGATGCAAGGAAAGTCTGTTCAGCTGACAGATCTGCTGCTGCCAATTCAAGGGCCCTTTAACatcttttaacctttttgttataaaattcaggagaaaatgaaaacagaaagggTTGACTTTGGCTCAATAAGCATGTAATGGAAAGTCTAGACGGCTCCAACCAAATTTGCGCCCGACTTGCAATTTGTAAACcgaaaaaacaaataaccaaataaaattaaatcctGCAATGTTCATGTTCAATCGTTGGTTTTGCATTACCCTTTTACCGAAATCTAAAGTTGCTTTCCCACACAGACCTCTGATGCcaatttcccttttttgttttgttatcacATGGTCTAGAAATACATAGTGATGGCAACTATTTCACATATGCAACACTGATATAACCATCTGTAGAGTAGaacacagcaaaaataaaaacttaaaagcattaaaaagatATAATGAGaccatttctttaaaatatatactacatACACATGTAGggaaaatatatagatttttctataaacaaaataattaaaacgtGGGAGGTCAGattgaaagagtaaaaaaaaaaaaagtcataaatgGTCAGGTTGAACTTAAATCTCAGGAACCTCAATAGggatttgcattacattttcatatatatatatattttttttatcagaacGAAGATTCACCTATTCAACTGGGATGGAAATTccaaaggaataaaacaaaaaacaatataaaaaaatgcagtttttcagGGCAAGAACATAGTGCTCTCATCGCACAGACAGGGTTTCGATGTCAAGGGAAGGGTCTATCTTATTGGCAGCATAGTGTGTGTGCGGAATAAAGTATCACTTAGCTAATACCTAGAAAACTGCGTCATTTGTTTTCGATTTGTTTATCATGTCATGCATTTACAAGATGCGTCTGTGTGGCTAAGACACCTTAGGCACTCCGTACCGAAGCAACCAATCAATTTGTTCcaaaaagcagcatttttatgccTCAAGATATCCTTTTCAAGCATTGTTGGATAAATATGACATTAAAAAGCACCCACAACTTAAGGTGTACTGtgataacctttttttttttttttcttttttcttcttttttcaagTATTCAGAATTAGTAATTCCAGTCATCTCGAGTTCCATGAAAGATGAAAGCAAACATATGTCCATTTGGGTACCAGTGTCCCCCCACAGAACTTCAGCACAAAAAGCTCATAAATGCAAATGCACCCACActaggattttcttttcttttttttttgtaacagacCAGATGAAACTTGGAAGACGATAACCAGCAAAAAGGTAGACAAAAAGCTGTTGGTGGAATTGACAACTTTCACTGTATGATGCCTGCAGTCTCGCATTGCAATTAAATGTTGTAcaatcaacaacaacattaagGGTGGCAGGCGTAAAATGAAGCAAAAAGCGGTAAAATAAGGCAACTTTTAAAGATCCTGCTCATGATGAGGGATTGGTACAAGTCTGTAatgaagttttgttttaatgttttttttcccccccatctttttttttttttttctttctttcttttctttatccTGCCCCAAACCAGTCAAGTAAACCTTACTTTCAACACAAAAGTCTCCAATCCACCTtctaaacaaaatgacaaaggTCCAGGTTAAAGTTGAGGAAGGAAGGAAACGTCGTCCTAGAGCCCAGATCATGGTGTCATTGGGAAAGGGGGTCCAAAGACTGAGAGGGAGCGGGGAGCCACTAATAGTTATTTTGCCATTGGCTTAAGTGGTGGCAAAAACCATATccatcaaaactgaaaaaaaataaaaataaaaaaaatacatgattgtCCTGGTTAGAATGAAAGGCTGCATTTgcaaaaacttttaAATTAAAACAAGCACTTCTTCATTCTTTCAGTAGTCTTTCAGTCTATCTCTCAGAGATGAAATGTTggtgtttaaacaaacaaaaacttcaaAAAGGAAGAGCATCGATCCTGACACCACAAACCAGCActgcttgtttcttttcttttcatgcttGCATTAACATTTGGACCCCCTGtggttaaaacaatattaaaattaaattaaactgcgCCCGCGCCCCCCGGATCACTCCTGGGGCTTGGGCTCGGACACTGTTGTGGAAGCAGCTGCTCTCTGGCTCAGGTTTTTGGCATCATCTCGGGGACCCCCCTGCAAGGGCTGGACTGGGCTGTGCCCGGCTTGGCTGACGGGCCGGCTGGAAGACTGAGAGGGGTAGCGGCGTCTGCCCTCTCCACTTGACGAATGTCTCTTCCGCCCTCCCTCCTCACCCATGGGa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU134242 True 3062 lncRNA 0.38 2 27497327 27501442

Neighbor

gene id symbol gene type direction distance location
AMCG00011502 NA coding upstream 684 27484188 ~ 27496643 (+)
AMCG00011500 rmnd5b,LOC105026275,LOC100306854,LOC106612137 coding upstream 15337 27472631 ~ 27481990 (+)
AMCG00011499 emx3,LOC107664735,LOC107563604,LOC108416560,LOC107598366 coding upstream 173382 27321672 ~ 27323945 (+)
AMCG00011497 NA coding upstream 198754 27297331 ~ 27298573 (+)
AMCG00011498 b4galt7,LOC106612238 coding upstream 201504 27288443 ~ 27295823 (+)
AMCG00011505 NA coding downstream 54858 27556300 ~ 27583803 (+)
AMCG00011504 hand1,LOC106603969 coding downstream 90213 27591655 ~ 27595004 (+)
AMCG00011510 NA coding downstream 394074 27895516 ~ 27906851 (+)
AMCG00011511 LOC100196276 coding downstream 406950 27908392 ~ 27915999 (+)
AMCG00011512 mrpl22 coding downstream 450857 27952299 ~ 27958923 (+)
G107321 NA non-coding upstream 28760 27467404 ~ 27468567 (+)
G107128 NA non-coding upstream 1045752 26447202 ~ 26451575 (+)
G107126 NA non-coding upstream 1109343 26387748 ~ 26387984 (+)
G107098 NA non-coding upstream 1204880 26277374 ~ 26292447 (+)
G107084 NA non-coding upstream 1294708 26199950 ~ 26202619 (+)
G107382 NA non-coding downstream 112519 27613961 ~ 27615738 (+)
G107402 NA non-coding downstream 289424 27790866 ~ 27874138 (+)
G107408 NA non-coding downstream 381653 27883095 ~ 27883396 (+)
G107450 NA non-coding downstream 786708 28288150 ~ 28288391 (+)
G107502 NA non-coding downstream 1164724 28666166 ~ 28666386 (+)
AMCG00011488 NA other upstream 654535 26818052 ~ 26842792 (+)
G107202 NA other upstream 726113 26770438 ~ 26771214 (+)
AMCG00011476 NA other upstream 1136552 26356167 ~ 26360775 (+)
AMCG00011455 unc5a,LOC107677380,LOC107653334 other upstream 1835148 25607986 ~ 25662179 (+)
AMCG00011430 dctn4,LOC107749746,LOC106604160 other upstream 3652416 23835819 ~ 23844911 (+)
G107394 NA other downstream 210764 27712206 ~ 27727867 (+)
AMCG00011519 NA other downstream 1367700 28869142 ~ 28876355 (+)
G107741 NA other downstream 2196159 29697601 ~ 29699419 (+)
G107784 NA other downstream 2356528 29857970 ~ 29875476 (+)
G107858 NA other downstream 2670346 30171788 ~ 30212090 (+)

Expression


Co-expression Network