G107098


Basic Information

Item Value
gene id G107098
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 26277374 ~ 26292447 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU133952
GGAGCCCTCCGTCAGTAATGGTTTCCACATGGACATCTGGAGAAATCAGCCAAGCCTCCAGCACGGGCAGAAATCTCCAAATTTAGAAGAAATATGAAAATTGTCAAAGGCTGCTTCCCTCGCAAGAGAATCCAGCCCAACCTCTCCCTCCCCTACACCCCCCCCGCCTCAactcaggttttttttttttgttttttttttcccctctctctctctctctctcactctctcttctcAGACATCGCAGGTCACAGCCTGAGGTCACTGGGGGGCCCGCCACTAGCCAATGGAGCGCCTCGGTGGGCTTTCCCAGAAGCGCAACTCTCCCAGCTAGGCCTGCCTCCCTCCGCATAtaagggaaaagaaaagtgtCCTCTCCCGGAGCCGGCTTGCACTTGAAAAGGGAGACTTGTGTCAGGAACCCCCGTCAGACTCTGGGGCTCAGAGAAGGCACGGCGTGCAACAGGGCCTTCCCCCCCGAACAGCACCACCAGCACAGCCACCAGAACCCCCTCCTGGGACACACACCTCACAACCGCACCCCctctccacccccacccccaccctcaccctcaccctcaccctcaccctcacccccACCCCGGCCAGGCACCACACCTGCGGCAGGTCAATGCAGGACACGGACCGGAAGACGGACAGATTAACAGcaCCAAGTAAACATCTGAAAGGGAGCAGGGCTACCGCAGTCCCATACACAGAGCCCAGCCAGGTGAGTGTAGCTCTGGACAGATGTTTCGTATTTATGTGATTAAGGACGACCTGAGGTGAAGACGTCAGCGCGTGTGCTGCAGGGCTTAGCGAGGCTGCAATCTCTAAGCTTCTCTGACAGTCTTTGAAACTGCACAGCAACCCCCTCTCCGCCTTCCAACTCTTGCAAAGGACATCGAGCTGGCCTTCTCCCTGCCTTATTGGCCCAGACTGAGAGAGCTTTTCGTATTGTACTCGTCAGTCCTGGCTGGGCTGAAACCGCCACAGAACATTCCACCTCCTCTTATGTTTGGGATATTTGAGGTTGACACTGTATTCCATATTTCCTGGTGGCTTTGGAAGTTGTGTCctgttcattgtgtgtgtgtgtgtgtggagtgctGTTTAAAGGACTGGGTGTATTGGAGGTCCTGggacatatttgttttgtatctaattaatttgtattttctcttgtATTGTGTGAACTAAAACTGGGTAGTTGAAGTCAAAAGCAAATACACTCTTCCCTATACAGTTCCTATTTAGCATCTACATCCATTTGCAGAACTGAACCCTCCTTGTTACACATTGCTTCAGGCTAGTTACAGCCTGGGGTAGAATTTACCAAAGAATTAACCCATGTAAGCTTTAACAGATTTAATACACCAGTGAATTACTTTCTTTGAATAGTCTCTTCAGTAACAGAACAAAATGCTAACAATGTTCTGTTTGTTGCTACAGACATTgccaacatataaaatatataattcattgtCTACTGGCTTTGATGCCCACTGATTAGCTGTACATATTTCACACTGCTCTCTGGGTTGTGAAAGGCTTTATTGATGACCAATATCTCTTAAGAGAGGGGTTTTGAAACTGTTGTCTATGGACCCCAAGGAGTCTGTAAAACACTATTTAAAGTGTCTGTGAAACAATAAAATGCTAGACAAAATCCTCTAAGGCTGTTAACAGTATATATTGGAAGCTGCAAGTCTGAAAATGGTCCCTCCAGCCTAATATATCTCAGAAGCGCTGTTTCAAGGGGGAGCTGtaaaaaaatctttctttaaTAATTCTAGTTCAGAAACTCAGTCAGTGGCACTGTGGGGATCGAGGTTCAGAGCCCTGACACAAGAGTATCTCTGTGACCGGGCACCCTCAGGAATTGTAATGTACCAGACCTGGCACCAGTGGGCACAATGAACCCCAGTGCAGTGCCGTCACTCCCAGCAGCCCTGCAGGCTCTGAGAAAGGTCTCCTCTGGATCTACCTGCCTAGCCACTCCTCCAATAAGCCTCCGAGCCCCTTTCCGAAACAGCTGGTGTGGGGATCAGGGCTGTGAAGTGCTGAGCTCAGGGGAGATGGGAGAgcgggggttgggggggaacATACCAGGCGCTGACACGCAATTTAGATGCTGCTGACGAGGCCTTGAGTGTTTTTCCAGGTTGTGCTGTGCAGGCCCCTCCACATAAAGACACCACAGTGCCTTATGATGTGGCAGACCCCATCCCCATCAAATCTCTTCCCTCCCTGTCCTGTTTTCTGCAGGAAAGACAATTGCTCCAGCATGTTAAGCCTCCTTCTGTGTTTTGTCCAGCCGCTCACGCTGTGTAGCAAATGACGCATGAATTCACTCTTCTTCATCAGTCGGGGAATATCGAAGGCACCTCGCTTTTGTCCACAAAGGACACGTGCAGTCAGAAAACATTACCTCCCAACAGTGGTGCCGGCAGTGACATTGCAGTGTCCTGAATGTATGACGCAAACTAAGTTCGACTGCAGTACAAGAAGATTGAATGTGACGTTGGTCTAGGCCACCACATGGCTTTCTGTTCTTTCCGTCTACAGATCCcaaattaacaatacaattttactGTAGTCAATTATCTTTAGGGCTTTCTGTTGCCTCCACCTCTTTGTCTCTGTACGGTCCTGGCTTCAGGCTGCTCATCTCGGGTCTTCTGTCTTTCCTCTTATCCTTCAGCTCTGACCTCCCTGAGGTGAGAGGTGAGAAAGTCAGGCAGCCATCCCGTGCTGGAGAGGAGAATGTGAGGTGTCTGCATCCGTCTACAAAACGCGGGAGTACAGTCTCTCGCCATATGGAGATGCACACCTGGTGAGCGTCCAAGCAGCTGTCACACAGAGCAAAAGCCTCCACTTTTTCCACCAGGTCCtcatgtacaaaaaaaaaagtaattagacTAGGTGAAATACCAAAAGATCCTCTATGTTCCGTCACCCATAATAGAATTCTAGACGGAGCAACTCAGAGAGAGAGGTTCCACAGCAATATCTCGATCCATTCTGTCATTGCTCCTTTTTACAGGCACTGGAAGATTCCCTAACATGAAATGACAGAATGGTGGTCTGTCCGTCAGGGAGTGAATCAGTCCAAGACGGTTGTTGAACGGTTTGTTGCTGTGCTGAGTTTaggtctgtattttaaaaaggtgagtGAAACTGTTAAGGAAATGAAGAACCAATAGTAGACCCTACAGTGCACTAATACCCTATAATAAAACAAGCCGAGCTTAAATAGAAACGGGCTCCAGATCTGCATACTGAACAAGTGAGTTTGCACACATCACACAGATGAACGCAGTGTCGGGAAATCCCCACGCTTGCTCTCACACATGCAAGTGCATTATGACAGAGAAGAAATTATTAGCGAAAACGCTACAGGGAGCGATACTAAAATCCAGTCCACACCCTGCAGAATATGTTATGGATTATAAGGGAAGAAACTGGCAGATCATAATAAACAGAGGACCACTTAGCAACAGTTCTGTGTGGACTGTGGACTGtgccctctctctttctctcgctctctctcgctcgctctgcTGTCCCCAGGCCCGTGGTGCAGTGCTGCATCTCTGGTCAGTTGGGAGTCTGAGATGAAGCACTGTAGCTCAGGAGGGGGACACTGCCCATCCTAcgtctgtgtttcagtgtacTGTGCCCTATCTctgcccctctccccctctccctgtcctcGGGGTCCAGTTTTCCCAGGAATCCCTTGGTCAAACATAGGGGGATTCCTGGAAATACTGTTCTTGGGGGCGGGGCTTGGCAACGCGACATCAGGAAGAAGGATGTTCACCTTTAAGATCCTGAAACCATGGGAAGAGAGGAGGCAACAGGCCTAGAAGAGGAAGACTAGAAGGCAGGTGTTCTGCTCTCTGCCTGCGCTGTGCAAACATTCAAATGGTTTTTATTGAGCACTTCCAGCCCCCGCACAGCATGCAACCAAGGGCATGGAGAGCACTATGAAAACCAGAATCAGAGGCCAGCGCACTCCTGTAGTCGTCCCGTTTCCCTGTTTTTGTTTCGGGAAGGAACCAGCTGCTTCAAACCTTGGATCTGTCTCCTTCCCATCAAGCCAAAAACCACGAGGGTCTTCCACAGCTCTTTAGCACACGCTGGTGATGAACTGTTGGAGGACAGAGTTCAAGCGCCGGCTCTGCAGTTTTGGTAGTGTAAATGTATAGTGTTTGTTATGTTTCTGTAAATAGTGCCATACCGTCCTAGTGAAAGCATTGCTGTTCTGTCAGTTGTGAtgcttgttttccttctttcGGGGTTATAATCTTGAAAACACCACAGAGAGGGGTTGTATTATGATGGCCCAGTCCAGCTGTGCCCTATTTCATGCCAGAGTGTTACTGTAAGTGTTACATATGCTGCCATGTATTAATGCTCAATAAAACTTGGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU133952 True 4438 lncRNA 0.49 2 26277374 26292447

Neighbor

gene id symbol gene type direction distance location
AMCG00011472 fbxo38 coding upstream 12847 26245927 ~ 26264527 (+)
AMCG00011471 fgfrl1b,LOC107740189,LOC107593239 coding upstream 35347 26240373 ~ 26242027 (+)
AMCG00011473 hspa9,LOC106604950,LOC106611979 coding upstream 78025 26189132 ~ 26199349 (+)
AMCG00011467 NA coding upstream 141596 26127315 ~ 26135778 (+)
AMCG00011468 LOC103355626 coding upstream 164520 26081951 ~ 26112854 (+)
AMCG00011483 hnrnpa0,roa0,LOC107598338,LOC105905838,LOC107567479 coding downstream 95847 26388294 ~ 26397982 (+)
AMCG00011478 NA coding downstream 109518 26401965 ~ 26409373 (+)
AMCG00011477 klhl3,LOC106604937,LOC106611969 coding downstream 120854 26413301 ~ 26435458 (+)
AMCG00011491 LOC101077011,LOC100136477 coding downstream 617904 26910351 ~ 26923941 (+)
AMCG00011490 NA coding downstream 665695 26958142 ~ 26969283 (+)
G107084 NA non-coding upstream 74755 26199950 ~ 26202619 (+)
G107004 ergic1 non-coding upstream 388536 25882692 ~ 25888838 (+)
G106994 NA non-coding upstream 481762 25795413 ~ 25795612 (+)
G106973 NA non-coding upstream 556788 25698252 ~ 25720586 (+)
G106966 NA non-coding upstream 599955 25674416 ~ 25677419 (+)
G107126 NA non-coding downstream 95301 26387748 ~ 26387984 (+)
G107128 NA non-coding downstream 154755 26447202 ~ 26451575 (+)
G107321 NA non-coding downstream 1174957 27467404 ~ 27468567 (+)
G107331 NA non-coding downstream 1204880 27497327 ~ 27501442 (+)
G107382 NA non-coding downstream 1321514 27613961 ~ 27615738 (+)
AMCG00011455 unc5a,LOC107677380,LOC107653334 other upstream 615195 25607986 ~ 25662179 (+)
AMCG00011430 dctn4,LOC107749746,LOC106604160 other upstream 2432463 23835819 ~ 23844911 (+)
G106711 zgc:175280,slc7a1,LOC107719755,LOC107702889,LOC107557764,LOC103353344,LOC106563607 other upstream 2524372 23748674 ~ 23753002 (+)
G106618 NA other upstream 2920815 23356062 ~ 23356559 (+)
G106613 NA other upstream 2935609 23341308 ~ 23341765 (+)
AMCG00011476 NA other downstream 63720 26356167 ~ 26360775 (+)
G107202 NA other downstream 477991 26770438 ~ 26771214 (+)
AMCG00011488 NA other downstream 525605 26818052 ~ 26842792 (+)
G107394 NA other downstream 1419759 27712206 ~ 27727867 (+)
AMCG00011519 NA other downstream 2576695 28869142 ~ 28876355 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_007451 BX088707.3 non-coding NC_007125.7 CM002898.2 38715673 ~ 38744637 (+)
grasscarp (Ctenopharyngodon idella) CI01000000_09032021_09035754 NA coding CI01000000 null 9031831 ~ 9036241 (+)
eurasian perch (Perca fluviatilis) G112018 LOC102799398 non-coding NC_053122.1 CM020919.1 4090508 ~ 4138931 (-)
tiger barb (Puntius tetrazona) G90802 epas1,LOC107586486,LOC107727363,LOC107699276,LOC107589559,LOC107708405 non-coding NC_056711.1 CM032080.1 4545021 ~ 4570758 (-)
tiger barb (Puntius tetrazona) G102148 NA non-coding NC_056712.1 CM032081.1 25115870 ~ 25116759 (+)