AMCG00011491 (LOC101077011,LOC100136477)


Basic Information

Item Value
gene id AMCG00011491
gene name LOC101077011,LOC100136477
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 26910351 ~ 26923941 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011491
ATGCTGAAGTACGAGGAGGAGGAAGTCTGCTCTGACCGGCTGGACACTGACTTTCCAGACATCGACTTGTCTCAGCTGGACGCCAGCGATTTCGATTCTGTCAACTGCCTCAGCGAGCTGCAATGGTGCAACGACCACTCAGACACCTCCCCTGCCTCCAACCAGTACAGCACAGGAGACCCCGAGCTTTTCGGGatAGAAGAGGAGAATGCGGCACTTCTGGCCGCTCTCACAGACAGCTTGGACGGGATGGTGGAGGACGAGGTGGGGGGGCTGTCTGTGTTCCCCTCgttgggggagggggctgaGGGGGAGGAGGACCCCTCCCTGTTAAATGACCCCTTCCCAGCCCCCCCCAGCCCAGAGACTGAAGACCCGTCTCTACTAAAGAAGCTCCTCCTCTCACCTGCCAACGTGCCTGTCAGCTATGAAACGCACAAACAAGGCAGCACGCATCGCCATAGCAATGGGAACCCAAACCTCAAGCCCCAGAGGCCTTCAGTAAAGTCTGATAGCGCACAAGACCACAAGCCCAGATTCTCACGACCGAAGGGCCGCACCTGCACCGAACTGCACCGGCACCTGACCACAACCCAAGCGGCCGAGGACGCCCCCTCCCCGGACACAGAGGGTGACAGCGAGTCGGAGGAGGACTCGGACAGTGAGGGCGAGTCCCCCGCCGTGGCGTCTGCCCTCCCGCAGTTCAGCTCCGAGGCAGAGCTGCATTCAGTCGTGGAGCTCATCAAATACATGCACACGTACTGCCTCCCCACTCGCAAGCACCCTGGCCTGGACCGGAGGGACCGCGAGGGCCCAGGCTCTGTCCGCAGGGCAAGGCCTGAGTGCGTTCCCACCAGGCTGCCCCCGCAGTCTTGCCCCAAGCCGatgtcacagacagacagctgtggCCGCCCTCGCTCAGTCTTCGTCCGCAAGAGAGAGGTGAAGGGGCACTCGCTACTCAGGGAGCTTTTAGAGACAGTCACCACCTTTGACGTGAGCAAGCCTTACCGACTGCACAGCCCTCCCTACTCCCACTGTAAAGTTGCCGTCTCTCCCGCTTCCCCCAAGCAGATACGGGAAGATAAGGCCCCTCCAGCCAAACCGGAGCTCAAAGACTCCATTTCCAAAGGCCTCGCGAGAGACAAAATTCTGAGTAGTGGCCCTCCCCAGCCCAAAACATCAAAGTCCCCTAAGAAACCAGAGGAAGCCTCCTTCTCCGTGAGGCGGTCCAGGAGGCTCGCTTCTTTCCCCGGACGCTTTGGCAAAAAGACATGGGTGGGGGCAGGGACAGGGAGGGGTAAGGCTGGTTCGACCAACCCAGGGCAGGGGAAGGAGGAGGCGGGAACAGCAGACAGCGCCCTGCAGGAAACGCCCAAGCACCACACTTCCTGCGTGACAGGCATGCGAAAGTCAGCCTGCGGTCAGAACGAGAAACGCGCCTGCCTGTGTCTGCCGCTGACTCCTAAATCCACAGGAGACAGTCATGAAGCCAACAAGTCCTTTGAACAGACACTAAGTGTGGAGCTCTGTGGAACAGCAGGTCTCACTCCTCCAACTACACCGCCACACAAACCAGTGGAGGACGACCTGTTCAAGCCAGAGGTGAAAGGGGAGTCTCCTCCGAAGAGCCCCTGGCTGCCGGCTGGGGGGGGGAGGCTGCATTCTCGGAAGTTACCGGAACAGACAGAGCTGTATGCCCATCTGCGCAAATCGGGCCAGGGGTCCAGTGAGGAGCGGTTGGGCAAGCGTACGTTCGGGGACCACGATTACTGCCTGCTGAGCTCTGGGGAAAGCCGCAAGAGGACAGCTGTCGTGCTGTCGCCCTGTAGCAgtgtggaggaggagaaggacgaggaagaggaggatgaagaggatgaggaagggatggaggaggaggcggagtgGGACGGGAGGGACCACGTAGAGGCAGGGACCTGGGTGGGGAGCAGGTTGGCAAGCCAGCAGCTCCTCTCCTCCAAAGACCCTGAGCCCATGCCCAAGTCCGACGGAGACGGGGAATTGGGCAGCTCGCTGTCCCGGTCCGGATCACTCCAAGCCTTATCCCCCCGCAATGCTGGGGAGACCTCAGAGCGATCCTCCCGCCCCCCGACCCCAAACCACCACACCCCCCGCACCCCCTGCTGCCAGCCACGCCCTGCCAGTGGGAGGCAGAGCTTCAGCTGTGAGAATTCAGAAACATGCCATGGGgagaaacagagaaataaagTCAACGATGACTGCCGTGTTTTCTACATTCACAACCTGCCAAGCAGTGTTACCCAGACGATGCTTCGCCGCCGCTTTGAGGCGTTCGGAGAGCCAGAGGAATGCAAAGTCATAGTGAAAAACAACGAGCGGTGTGGAGTCATTACCTATCGGCAGGTGGAGAGCGGGCCGGGGCAGCGCAAAAGGAGGGAGCCTCCATTCCAGATCAGTTTCGGGGGGCTGCGGAGGTTCTGCAGGAAGCGCTACATTGATCTCGATGAAGCGGGACCAGGGCCAGTGAAGAGCAAATATGATGCCATGGACTTTGACACCCTGCTGAAAGAAGCACAGAAGAGTCTGCATCGTTGATAAAGCCTTAAACCCAAAGGAGACACGCCTCAGTACCTCAACCAAGGCACCTCCTGATGTTTACGTTTTTAACGGGGAAAAAactaaggaaataaaaagaccATGTCTCTTTAAAGTGAGGAGAgagggtaataataataaaaaaagagaaaacaagttTACACTGAACACAAGCTGCTTCCTGTGTGGGTGTCCATTACAGACTTTGCGCCAGCCCCGGccattagggaaaaaaaaaagaagaagaaaaagaggggttccttagtgtgtgtgtgcgtgtcattCTTTTTGTATTCTCGATTTTACTATTGGTGGAACCGCAGTTGCATTCCGCCATTTATCTGTCTTCGTATGTGACTAAACCGCTTTAACGTTTATCGTGgatgttacaaaaataataaaataaaataaactacgTTTGTGCTACGTtatgaggaaattaaaaatataataattaaaagaagcaTAAATGACAACTTAGAgtttacaacaaaataactttcttgttttgtaattttagtGCTTCCTTAATTTCATCTATGCACTCGTAACGAGGTAATTGTCTTCTCTTTTATTTCTCCCACCCCCAAGCCTGCGTGTATCAACCCTTGTGCACTGTGCTGCTGGTTAACTTCAGCCAAGACTTTCAGAGGGATCTGGCAATTTTTAGAGCACTTCTCGGATCTGTGTCTCCTGTTGAAGAGAAATAGAACCGATCCTACTTGAGCACTTAATTGAAGCAAAGTCAAACTGAACCAACGACTTATTCATCGATGCAATAATTAGGCTGCAGAGGTTTATTGACATTGATTAAATACAACCTGGCTGCTTAGAAATCCTGTACCTGAGAAAAACACCAGGACAATCTCACATCACAATTTCTGAACAAGAAAATTGCATTAATTTGCTTTAGACTGTGAGGCCATACTTTTTGTGTGACCCTCGTACATGAAACCTGTACGTCTATCATGCAGTGAGTTTGCAGAgattttctttatctttaacTGGGCTTTTCCAGCAGCACTGCCACACGAAAGCGTTGGACTCGTCGGCCTTTGGCGCAGTATGTCGTTAGGCGTTAACacgaaaataaaaatgagcagGCCAAGTATCGTTCACCTGCCAATTGCCGccttttcagagaagaagaatGTTTCATTATTCAGTGGCGAAACTGGGAATGTCAGAGATTCTAAAATCCCCTTCTCATTGATGAATCAGAGGGATTTCTCTACCTCGTTTAcatcctctctcttcctctctctctctctcttttctggTGGGCGCAGGGAAGACACCTTTGCCATCCCCAAAAGCACTTGCCTTGTGGCTGAATATATTTGTCTCTGTGTCGATTTTCAAGTCTTTCTATCCGGTATACCAGTATATATGCGTGTTGTCTGTCTCTTGTCTTGTGGCGATGTGTCTAGGCACTATGATTGCAGGGGGATCTACGAAATGTTGGGCACGCCCTGCGCATTTTGAGAGATCGAGACTGGATTTACAGCcctgtctctcctcctctccgaCTTTCTCACTCTTCCTatctcttcctcttccccttTTCTAATCCCGCCCCCCTAGGTAGTGTGCAAGTTTatccctgtgtgtgttgtcctCTCCTGAACTGCCTAGCTTCCAAGTTTCTCTCGTccgtctctcttcctctttcctaTCTCTTCTTCCACgagaacaaaatgtttacatcaATAGATTCTCCATCTACTTTACTAGAACGCACACTAAGTACAAAGACGCCTTATTCAGTGTTAGTGGTTCCCTACAAGGATGTTCCTTTCTGGCTTACCTTAGTAGGTTACCCATAAAgaagaactatatatatatatatatatatatatatatat

Function

NR:

description
PREDICTED: peroxisome proliferator-activated receptor gamma coactivator 1-beta-like, partial

GO: NA

KEGG:

id description
K17962 PPARGC1B, PGC1B; peroxisome proliferator-activated receptor gamma coactivator 1-beta

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011491 True 4442 mRNA 0.52 12 26910351 26923941

Neighbor

gene id symbol gene type direction distance location
AMCG00011477 klhl3,LOC106604937,LOC106611969 coding upstream 474893 26413301 ~ 26435458 (+)
AMCG00011478 NA coding upstream 500978 26401965 ~ 26409373 (+)
AMCG00011483 hnrnpa0,roa0,LOC107598338,LOC105905838,LOC107567479 coding upstream 512369 26388294 ~ 26397982 (+)
AMCG00011472 fbxo38 coding upstream 645824 26245927 ~ 26264527 (+)
AMCG00011471 fgfrl1b,LOC107740189,LOC107593239 coding upstream 668324 26240373 ~ 26242027 (+)
AMCG00011490 NA coding downstream 34201 26958142 ~ 26969283 (+)
AMCG00011493 NA coding downstream 135051 27058992 ~ 27067377 (+)
AMCG00011494 htr4,LOC108269380 coding downstream 264610 27188551 ~ 27195648 (+)
AMCG00011495 lman2 coding downstream 347657 27271598 ~ 27279308 (+)
AMCG00011496 tmed9,LOC108416549 coding downstream 356229 27280170 ~ 27283428 (+)
G107128 NA non-coding upstream 458776 26447202 ~ 26451575 (+)
G107126 NA non-coding upstream 522367 26387748 ~ 26387984 (+)
G107098 NA non-coding upstream 617904 26277374 ~ 26292447 (+)
G107084 NA non-coding upstream 707732 26199950 ~ 26202619 (+)
G107004 ergic1 non-coding upstream 1021513 25882692 ~ 25888838 (+)
G107321 NA non-coding downstream 543463 27467404 ~ 27468567 (+)
G107331 NA non-coding downstream 573386 27497327 ~ 27501442 (+)
G107382 NA non-coding downstream 690020 27613961 ~ 27615738 (+)
G107402 NA non-coding downstream 866925 27790866 ~ 27874138 (+)
G107408 NA non-coding downstream 959154 27883095 ~ 27883396 (+)
AMCG00011488 NA other upstream 67559 26818052 ~ 26842792 (+)
G107202 NA other upstream 139137 26770438 ~ 26771214 (+)
AMCG00011476 NA other upstream 549576 26356167 ~ 26360775 (+)
AMCG00011455 unc5a,LOC107677380,LOC107653334 other upstream 1248172 25607986 ~ 25662179 (+)
AMCG00011430 dctn4,LOC107749746,LOC106604160 other upstream 3065440 23835819 ~ 23844911 (+)
G107394 NA other downstream 788265 27712206 ~ 27727867 (+)
AMCG00011519 NA other downstream 1945201 28869142 ~ 28876355 (+)
G107741 NA other downstream 2773660 29697601 ~ 29699419 (+)
G107784 NA other downstream 2934029 29857970 ~ 29875476 (+)
G107858 NA other downstream 3247847 30171788 ~ 30212090 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_007873 NA non-coding NC_007125.7 CM002898.2 24997012 ~ 25001647 (-)
grasscarp (Ctenopharyngodon idella) CI01000000_16946558_16965306 PPARGC1B coding CI01000000 null 16946457 ~ 16965306 (-)