AMCG00011468 (LOC103355626)


Basic Information

Item Value
gene id AMCG00011468
gene name LOC103355626
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 26081951 ~ 26112854 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011468
GTGACATCTGCAGCCTTGGCCGAGAGGAGCCCCCAGCAGATGACATCAAGTCATCCCAAGGAGAGGGACTGGTCTGTACCGTGTGCTGCAGGGAAGACTACAGGAAAAACCCTGGCTGTTGGAAGTTGTCAGAATACCAGGcgactctctctctgtctcgtcGGTTCTTGGAATATTTTCGTAGCAACTGCAAAGTGACACACCGATCTACATCTACTGTTGATGTCGACACCCCTCAGAACTGCCTGTAATATGACACAGGTCCAGAAGAAGACAACCACAATGTCACTGACCATTTCGTCCTGCTCACGGGAGTCGTCCTCGAGCACCACCTTCCAGCAGAGACACTCCAGCCTGGTCCAGCCGCTGTGCATCAGCCCTCAGCGGACCCAGAGTCCATCCTACAGCCAGCAATTTGCAGGGAACGGAGGAGTGGCCCCCACATTTATAAAGTGCCTCCATGACATCAGCACAGTGAAGGGCCAGCTGGTGGTCCTGGAATGCCGTATCCGAGGGACGCCCCCTCTGCACGTGATGTGGTACCGAGAGGAAGAGCTGATAGTGGACTCAGCGGACTTCCGCATCCTCAGGAAGAAAGCCAGTTCCGTTTCAGTTCCTGGTCTGGACGAGGTGCTGGCTCTGGAGGAGACTTCCTGCTTCCCAGCCGCTCCCGGCCCAGAAGACTTCCCGGCCTTCATGTGCGACACTGCTGAGATCCCGCCCCCAGAGTGGCCCGAGAGCCCAGAGGACGAGGACGGCCCCGTGTTTGAGTCCCCCATGGAAAGgacTCCAGAAGTACAGCAGCACAGGGATATTTTCCCAGGAGAACGGCAGCACCCTGTCCCGGTAGAGAGCAGCCGCAGGGCTTGGTCTAGGGACTCTTCTGAAGCCTCGGCTGTGTTGCCACTGGTCGAGGAGAAACAATTATCGTCCAAACTAACAGCCAGGCGTAGCGAGCCCAGCGGCCAGCCAGACCCCACCGGCACTATGAGCATCACCAACCTCCCTTCCTTCTCCCCCACAGCCTACCCCCCCAGCGCCTTCAACTACGAGCGGCCGCGACACTTCATCCAGTCTCAGCCCCGCTTCCAGGCCCCGAGCTATGAGCAAGCCTGCCAAGGCCAGTCTGTCTACCCCAATGGCCAGAAGCCCTCCCCATCCTCCTCCACGCTCAGCTCTCCGGTTTccactccctcctcctcccttgggtCCCCCAGAGATCCCCCTGCCCCTCGGCCCACCTCCCCATCTCGCACCCCCATGCGGTCCAGCGTCACCCTGGTGCCCAAAGTCCCCGCTGGCCAACCTCGATCTCCGGCTGCCTTCCTCAGTTCGGTCCTGCCCTGCCAGCCAGTCTCCCAGGCCAAGCCAGCCTCCGTGGCCCCACCTAGGCCTGCCTCTCCCGTTTACTCTCCACGCACCCCAACTCCCCCCAGCATCTCCCCCATGGTGCCAAAGACCACCCCTGTTCCTCAACATCCTGCACCCCCTGCCCCTCCCAAGCTTCCTCCTAGTTACAGACAGTCTCCAGCCTCAGAAAAGCCCATCTTCAAGAAGTCCCCTCGGCAGACAATCCACTCCACTGATGAAGAGATCCAGGGCTCCAAGGACGCCCTCATCCAGGACCTGGAAAATAAACTTCGCTGCAAGGAGGCTCGGAGGAGGAATGGAAGCCAGAAGCTGACCTATGAGGAGAGGATGGCTCGCAGGTTGCTGGGCCCAGATAACGTAGCCTCTGTGTTCGATATTGAGAACTCCCAGGACTCGCACTCGGGGCAGaacTCCCCAGATGGCAAGCACACCGGCACTGGACAGCTGAGAAACAGACAGGACTCCGGGACGCAGGACAGTGAGACGGCTGCCATCCAGGAGAAGTGCTACGCCCCTCGCTTCATTCAGGTGCCCCAGGACCTCACTGTGGAGGAGGGACGCTTCTGCCGGATCGACTTTAAGgtTGGGGGCCTACCTACTCCTGACGTGGTCTGGTATCTGAACGGGAAGCCCATCCGCCCAGATGACTACCACAAGATGCTCGTGTGTGAGAAGGGCGTGCACTCCTTCATCATAGAGATCGTGACGGTGCATCACGCCGGGGTGTATGAGTGCGTGGCCAGGAACCGCGCAGGGGAGAGTCGCTTCTCCCTTCGTCTGGATGTCATTGCCCAGGAGCTGCTGCGCCCCCCGGTGTTCCTCCAGAAGATGCAGAACTCGCGGGCTCTGGAGGGGGACACCGTGAGGCTGGAGTGCAGGGTCTCGGCCTCTCCGCTCCCACAGCTTTACTGGAAGAAAGACAAGGACATGTTGTGCATGGAGCCAGACAGGATGAGCCTGTATGAGGACAACAGTGGGCGGATCTGCCTGCTGATCGAGAGGGTGCAGAAGGCCGACGCGGGTTGGTACACTGTATCCGCCATCAACGAAGCTGGCATGTCCACCTGCAACGCCAGACTGGATGTGGGGACCCGCTTGAACAAGGCTGTCCCTGCAGGCAAGCACCTAAAAGTGCGCCCCACGTTCAGCCAGTACTCGGTCCTGAACGGGCAAGGAGCCGATGAGAGGCAGTCCCGGAGTCCAGAGGGCACCATGCAGAACGCGCCCCTGTACGAGAGTGACGAGCTATAGAGACCGGGAGAAAAGCCCACCGGAATTGCAGCAGCAATGACGTGCCTTATTTTTGTACCCATCtctgatttttttgttcttcagatTTAGGTTGTTTTTGTGGTGGGGGTGGAATTGCAAGTTTGGTCATGCAGACCAGTCCTACTTCATCTGTTTTGCCCCAGTCAGTTCATTGCACTTCCAAATTCAAGGGACTCCCCTCTAGTTGagtattttgaataattgttGAAACTCTTCTCACTTTAGAatggcaattttaaaatgcaccttAGCTAATGACTGCCTGAGCTCTCCTCCCCGTGTAGTAGTTTGACATGGGTCTTTGTTGTACACTGTCCAGTTCTGAAAGGTCCGGTATGTTTGAGAGGGAAATGTTTTTACCACACAAGTTTCCAGTGCCAAGGGTACTGCATATCCCAAGAGATCTTTATcaaagtttaattaaacaattctaATATTTATTAGCTATTTAATGGGATACTGGTACTGAAACATCCGGTAACATCTCTTGCAAGGCTGCCTTCTACAGGTTTGGACTTTCTGAAGAAAGACTTTTCTACCAATGTGAAGCAGAAAAAGGAAACCAACACTTGACCTGTCTCTGTGTATGATTTAGAtgttaaatggaaaaatgaataaagtttTCTTGacaa

Function

NR:

description
PREDICTED: palladin-like

GO: NA

KEGG:

id description
K19875 MYOT; myotilin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011468 True 3275 mRNA 0.56 16 26081951 26112854

Neighbor

gene id symbol gene type direction distance location
AMCG00011466 NA coding upstream 46583 26034232 ~ 26035368 (+)
AMCG00011464 neurl1b coding upstream 70057 26005894 ~ 26011894 (+)
AMCG00011462 dusp1 coding upstream 165278 25913524 ~ 25916673 (+)
AMCG00011460 NA coding upstream 204405 25849573 ~ 25877546 (+)
AMCG00011461 NA coding upstream 269973 25802912 ~ 25811978 (+)
AMCG00011467 NA coding downstream 14461 26127315 ~ 26135778 (+)
AMCG00011473 hspa9,LOC106604950,LOC106611979 coding downstream 76278 26189132 ~ 26199349 (+)
AMCG00011471 fgfrl1b,LOC107740189,LOC107593239 coding downstream 127519 26240373 ~ 26242027 (+)
AMCG00011472 fbxo38 coding downstream 133073 26245927 ~ 26264527 (+)
AMCG00011483 hnrnpa0,roa0,LOC107598338,LOC105905838,LOC107567479 coding downstream 275440 26388294 ~ 26397982 (+)
G107004 ergic1 non-coding upstream 193113 25882692 ~ 25888838 (+)
G106994 NA non-coding upstream 286339 25795413 ~ 25795612 (+)
G106973 NA non-coding upstream 361365 25698252 ~ 25720586 (+)
G106966 NA non-coding upstream 404532 25674416 ~ 25677419 (+)
G106961 NA non-coding upstream 414169 25666124 ~ 25667782 (+)
G107084 NA non-coding downstream 87096 26199950 ~ 26202619 (+)
G107098 NA non-coding downstream 164520 26277374 ~ 26292447 (+)
G107126 NA non-coding downstream 274894 26387748 ~ 26387984 (+)
G107128 NA non-coding downstream 334348 26447202 ~ 26451575 (+)
G107321 NA non-coding downstream 1354550 27467404 ~ 27468567 (+)
AMCG00011455 unc5a,LOC107677380,LOC107653334 other upstream 419772 25607986 ~ 25662179 (+)
AMCG00011430 dctn4,LOC107749746,LOC106604160 other upstream 2237040 23835819 ~ 23844911 (+)
G106711 zgc:175280,slc7a1,LOC107719755,LOC107702889,LOC107557764,LOC103353344,LOC106563607 other upstream 2328949 23748674 ~ 23753002 (+)
G106618 NA other upstream 2725392 23356062 ~ 23356559 (+)
G106613 NA other upstream 2740186 23341308 ~ 23341765 (+)
AMCG00011476 NA other downstream 243313 26356167 ~ 26360775 (+)
G107202 NA other downstream 657584 26770438 ~ 26771214 (+)
AMCG00011488 NA other downstream 705198 26818052 ~ 26842792 (+)
G107394 NA other downstream 1599352 27712206 ~ 27727867 (+)
AMCG00011519 NA other downstream 2756288 28869142 ~ 28876355 (+)

Expression


Co-expression Network