AMCG00011435 (ctnna1,LOC107594945,LOC107750356)


Basic Information

Item Value
gene id AMCG00011435
gene name ctnna1,LOC107594945,LOC107750356
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 24209990 ~ 24242241 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011435
ATGTTGCAGGCTGGCAGGAAGGAGAGAAGCGATGCCCTCAACACAGCCATCGATAAGATGACCAAAAAGACCAGAGATCTGCGCCGACAGCTGCGCAAGGCAGTAATGGATCATGTTTCCGATTCCTTCCTGGAGACCAATGTTCCCCTTCTGGTCCTTATTGAAGCTGCGAAAAATGGCAATGAAAAGGAAGTGAAGGAGTATGCACAAGTCTTCCGTGAACATGCCAACAAGCTCATTGAGGTTGCCAACCTGTCTTGTTCCATCTCCAACAACGAGGAAGGTGTAAAACTGGTCCGCATGGCAGCTTCTCAGCTGGAGATTCTCTGCCCACAGGTGATTAATGCTGCACTGGCTCTTGCTGCCAAACCAAACAGTAAAGTGGCACAAGACAACATGGATCTGTTCAAGGACCAGTGGGAGAGGCAAGTGCGTGTGCTGACTGACGCTGTGGATGACATCACATCCATTGATGACTTCCTGTGTATATCAGAAAACCATATCTTGGAGGATGTGAACAAGTGTGTGATTGCACTACAGGAAAAGGATGTGGATGGGCTTGATCGTACTGCTGGGGCTATCAGAGGCAGGGCAGCAAGGGTTGTCCACGTGGTCACCTCTGAAATGGACAACTATGAGCCTGGTGTCTACACTGAGAAGGTCCTGGAAGCTACAAAGCTTTTGACTGACACAGTGATGCCCCGTTTCAGCGAGCAAGTGGAGGCTGCCGTGGAAGCCCTGAGTGCCAACCCAGGGCAGCCCGTGGACGAGAATGAGTTCATTGACGCATCTCGGCTGGTTTACGATGGTGTGAGGGATATCCGGAAGGCTGTACTGATGATCAGGacaCCGGAAGAGCTGGACGACTCTGATTTCGAGACAGAGGAGTTTGATAATAGGAGCAGAACCAGTGTGCAGACGGAGGATGACCAGCTGTTTCATGGGCACAGTGCTCGGGCTATTATGGCACAACTTCCACAAGAACAGAAAGCCAAGATTGCCGAACAGGTTGCCAGCTTCCAGGAGGAGAAGAAATGTACAATTACCAAAATCTCATTTCTCAGGGGGAAAGGGCCACTGAAGAACACATCTGATGTAATTAGCGCAGCAAAGAAGATTGCTGAAGCTGGTTCCAGAATGGACAAACTGGGTCGCACCATTGCAGATCATtGCCCTGACTCTGCCTGCAAACAGGATCTGCTGGCCTACCTCCAACGTATTGCCCTATATTGCCACCAGTTGAACATCTGTAGTAAAGTCAAAGCAGAGGTGCAAAACCTGGGAGGAGAGTTGGTGGTTTCTGGGGTGGACAGTGCCATGTCTCTGATCCAAGCAGCCAAGAACCTGATGAACACTGTCGTGTCCACTGTGAAGGCATCTTACGTGGCTTCCACCAAGTACCAGAAGTCCCAGGGCATGCAGTCCCTGAACTTGCCTGCCATCTCCTGGAAGATGAAGGCCCCCGAGAAGAAGCCTCTGGTGAAACGCGAGAAGCAGGATGATGGCCAGACCAACAAAGTCAAGCGGTCTTCTCAGAAGAAGCACATCAACCCTGTCAAAGCTCTCAGTGAATTTAAAGCCATGGACAGCATTTAA

Function

symbol description
ctnna1 Enables actin filament binding activity and cadherin binding activity. Acts upstream of or within tissue homeostasis. Located in adherens junction; cell cortex; and microvillus. Part of catenin complex. Human ortholog(s) of this gene implicated in patterned macular dystrophy 2. Orthologous to human CTNNA1 (catenin alpha 1).

NR:

description
PREDICTED: catenin alpha-1

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0015629 actin cytoskeleton cellular_component
GO:0005902 microvillus cellular_component
GO:0005938 cell cortex cellular_component
GO:0030057 desmosome cellular_component
GO:0016342 catenin complex cellular_component
GO:0005198 structural molecule activity molecular_function
GO:0051015 actin filament binding molecular_function
GO:0045296 cadherin binding molecular_function

KEGG:

id description
K05691 CTNNA; catenin alpha

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011435 True 1596 mRNA 0.51 11 24209990 24242241

Neighbor

gene id symbol gene type direction distance location
AMCG00011434 ctnna1 coding upstream 35486 24148957 ~ 24174504 (+)
AMCG00011429 NA coding upstream 271952 23909700 ~ 23938038 (+)
AMCG00011426 NA coding upstream 396274 23786963 ~ 23813716 (+)
AMCG00011425 NA coding upstream 434482 23760289 ~ 23775508 (+)
AMCG00011420 NA coding upstream 532714 23663024 ~ 23677276 (+)
AMCG00011437 NA coding downstream 551131 24793372 ~ 24808824 (+)
AMCG00011439 NA coding downstream 575338 24817579 ~ 24824029 (+)
AMCG00011438 NA coding downstream 639115 24881356 ~ 24886761 (+)
AMCG00011441 NA coding downstream 672834 24915075 ~ 24916940 (+)
AMCG00011440 rnf44 coding downstream 729306 24971547 ~ 24986723 (+)
G106742 NA non-coding upstream 238807 23941012 ~ 23971183 (+)
G106718 NA non-coding upstream 376690 23829289 ~ 23833300 (+)
G106640 fat2 non-coding upstream 669262 23539365 ~ 23540728 (+)
G106631 NA non-coding upstream 688059 23382282 ~ 23521931 (+)
G106619 NA non-coding upstream 848976 23356734 ~ 23361014 (+)
G106863 NA non-coding downstream 677610 24919851 ~ 24943678 (+)
G106871 NA non-coding downstream 696781 24939022 ~ 24940823 (+)
G106874 NA non-coding downstream 744597 24986838 ~ 24991237 (+)
G106906 NA non-coding downstream 805283 25047524 ~ 25049147 (+)
G106946 NA non-coding downstream 1095311 25337552 ~ 25337767 (+)
AMCG00011430 dctn4,LOC107749746,LOC106604160 other upstream 365079 23835819 ~ 23844911 (+)
G106711 zgc:175280,slc7a1,LOC107719755,LOC107702889,LOC107557764,LOC103353344,LOC106563607 other upstream 456988 23748674 ~ 23753002 (+)
G106618 NA other upstream 853431 23356062 ~ 23356559 (+)
G106613 NA other upstream 868225 23341308 ~ 23341765 (+)
G106242 NA other upstream 3842767 20361208 ~ 20367223 (+)
AMCG00011455 unc5a,LOC107677380,LOC107653334 other downstream 1365745 25607986 ~ 25662179 (+)
AMCG00011476 NA other downstream 2113926 26356167 ~ 26360775 (+)
G107202 NA other downstream 2528197 26770438 ~ 26771214 (+)
AMCG00011488 NA other downstream 2575811 26818052 ~ 26842792 (+)
G107394 NA other downstream 3469965 27712206 ~ 27727867 (+)

Expression


Co-expression Network