AMCG00011441


Basic Information

Item Value
gene id AMCG00011441
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 24915075 ~ 24916940 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011441
ATGGGCAGTGTCAAAGATCTGACCAGCAACCTTCAGGTGTCACTCAACACTGGGGAGGGGATGGAGAGTCTCCTTGTGGCAGAAACTGGACCAAATCTAAGTTCCCATTCTTCCGAAGGAGGTGTGAGCTGTGAAATAAATTCAAGGGCAGAATCGCCTCACTTGATTGCCAGCTCTGAAGACAAAAACGCAGAAGACAGCAGTTCCTGTCAGCCTCAGAAAACCGGTAATAACTTCAGAGAAAACAGCGAAAACATGGAAAAGGCCTCCAGGCACCTGGAGCAAACCTCTAATGCACATACACAGGAGTCTAATGGGAAGCAATCTGGGCAGCCATGTCTTAATGAAGAGGCAGTACAAAAAGACACACCTGGTAACGCAGAAGTGACAAAGGTTGAGGCAGAAAATACCAGTTCATCTGCTGTACCAGTTAACAACCACACAGTCAATGACACCTTGAATACGTCCAGTTCTTTGCTTCCTAGGCAAACCAGGAGTACAGCAATAAAGGACAGTAAACTGAATCAACAAGTCATGGGAATAAATCAGGATCCAGCCATAAAAGTGACCAATAATGCCCCCGGATAtttaataaaagaagaaaatattcaaGAGAAAACATCCGAGAGAGATTCTCTGAATGAGCAGGAGAAAGTGAAGGGGAATGTCACTGTTTTGTTGGATGGTTCCACTGTGattacaaattcaaaagcaaTTGAACATGCTGAAAGAGCTGCTCTTGGCACACTGCACTCAGAGACccgaaaacaaaacacaaaatgtacaacTAAGGCCCAGATGAgtttgcaagaaaacaaccaGGAAGCTACACTGAACAAGGTGCAGTCCCCAAAGACACCAGTCAATCAGGAGGTGGCTGTGAAGCCAGTCACTCCGAAGGATGAAACTATGCAGCCAGACATTAAAAGTGCCAGTAATACATGTCCCAAGAAAAACGCGAACGGAGATAAGCTGTCGGGACCCTTGAACGTGCCAACAAACTCTGGTCTGAAAGAATCCAGTCCCACACAAAAAACTAACCCAGTATTGCAGGTTAGTGTAGCTGATGAGAAAACCACAGACCCCTCGCACAACAAGGGGCAAACTGAGCAGAAACAATCAGGGGGGAATAAATTAAAAGCCCGATGTCTTAGTGAGTCTGACGCCAAGACCAAAGCCCTTGATAACTCCTTTAAGGAATCCAAAGGTTTAGCAGTGCCGCAGCCTTCTTTTATGTCTCCTCAGACTTTGGCTACCAGTACACAGCATGCTGAGATTCAGGTCAGCCTTGAGGTGCTCTGTATATCGGCAGCTACCAGCCCTATGACTCCTCCCGAGGGATGCGCAGCTTTCTTTTTCCCTTATTCAAGCGCCAAGGCAGCCCTGGCTGCTGCCGAACTGGGGAATATCAGCAAGAAAGACGCAGAACTACAGGTGGGTGAACAAATAGAGTCACGTTCAGTGGCCACTGCCCCCATGAGCCCACTGAGCTTGACAGCTGAAGCATCCTACCCAGAAATCCAGATAAAAGGCGTGACAGAGGATGACCAGCCAGAGCCAGTGAGAGAGGGCCCGGTCAAGGCTGCCGCCGGGCAGGAGCTGAAGAGACGCCACCGAAACCCGTTCCGCGTGATGCTGCAGAGTGTACGGCGACCACGCTGCTGCTCCCGGGCCAACACCATCGAGTGA

Function

GO:

id name namespace
GO:0045202 synapse cellular_component

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko04724 Glutamatergic synapse
ko04742 Taste transduction

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011441 True 1689 mRNA 0.48 2 24915075 24916940

Neighbor

gene id symbol gene type direction distance location
AMCG00011438 NA coding upstream 28314 24881356 ~ 24886761 (+)
AMCG00011439 NA coding upstream 91046 24817579 ~ 24824029 (+)
AMCG00011437 NA coding upstream 106251 24793372 ~ 24808824 (+)
AMCG00011435 ctnna1,LOC107594945,LOC107750356 coding upstream 672834 24209990 ~ 24242241 (+)
AMCG00011434 ctnna1 coding upstream 740571 24148957 ~ 24174504 (+)
AMCG00011440 rnf44 coding downstream 54607 24971547 ~ 24986723 (+)
AMCG00011443 cltb coding downstream 86724 25003664 ~ 25014869 (+)
AMCG00011444 prelid1 coding downstream 127265 25044205 ~ 25047214 (+)
AMCG00011450 NA coding downstream 154797 25071737 ~ 25093488 (+)
AMCG00011451 ddx41 coding downstream 177589 25094529 ~ 25105105 (+)
G106742 NA non-coding upstream 943892 23941012 ~ 23971183 (+)
G106718 NA non-coding upstream 1081775 23829289 ~ 23833300 (+)
G106640 fat2 non-coding upstream 1374347 23539365 ~ 23540728 (+)
G106631 NA non-coding upstream 1393144 23382282 ~ 23521931 (+)
G106619 NA non-coding upstream 1554061 23356734 ~ 23361014 (+)
G106863 NA non-coding downstream 2911 24919851 ~ 24943678 (+)
G106871 NA non-coding downstream 22082 24939022 ~ 24940823 (+)
G106874 NA non-coding downstream 69898 24986838 ~ 24991237 (+)
G106906 NA non-coding downstream 130584 25047524 ~ 25049147 (+)
G106946 NA non-coding downstream 420612 25337552 ~ 25337767 (+)
AMCG00011430 dctn4,LOC107749746,LOC106604160 other upstream 1070164 23835819 ~ 23844911 (+)
G106711 zgc:175280,slc7a1,LOC107719755,LOC107702889,LOC107557764,LOC103353344,LOC106563607 other upstream 1162073 23748674 ~ 23753002 (+)
G106618 NA other upstream 1558516 23356062 ~ 23356559 (+)
G106613 NA other upstream 1573310 23341308 ~ 23341765 (+)
G106242 NA other upstream 4547852 20361208 ~ 20367223 (+)
AMCG00011455 unc5a,LOC107677380,LOC107653334 other downstream 691046 25607986 ~ 25662179 (+)
AMCG00011476 NA other downstream 1439227 26356167 ~ 26360775 (+)
G107202 NA other downstream 1853498 26770438 ~ 26771214 (+)
AMCG00011488 NA other downstream 1901112 26818052 ~ 26842792 (+)
G107394 NA other downstream 2795266 27712206 ~ 27727867 (+)

Expression


Co-expression Network