AMCG00011440 (rnf44)


Basic Information

Item Value
gene id AMCG00011440
gene name rnf44
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 24971547 ~ 24986723 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011440
GAGGATGCGAATGTTGTGGGTTTGAATCGTCGGTCGGATGAAAggagccgccgccgccgccgcgaGAGCCGCACGACCCCCATTGTCTTAAAGACGGACCCGGGGACAAACACACGTCCTATCTCGTAACCGGGGCGCGTTGGCACTTCGCACTGGCGACAGAGTTGGGAGTTAAGAAGTATCAGAagtgacaaacaaaacaaacccaaccACCCAACAAAAGAAACGGGACGATCGGCGCTGTATTTGTCCCGTCGGTTGTGCGTttaggcagagagagagaaggggggggcaCATGCTTTATCGTCGGACACTCCGGGTCGTGCATTTGTGCCACTGATTTGAAATCTCttaagctgtatttatttttgggaaaCCCATTGTAAGAGCGAGCGGAGCTTTTGTCAGATGCATCTGTCTTCCGGCCACATTTCAAAACCCCAAATCCCCGAAAGGAGTGAAGACAATCCGAGGCTGAGACACAAGTGCCTCTAGCACGCTGTTCTCCCGCTCCTGAGCGCGACTCGCCCCCCGACGTCACCAATGCGACCATGGGAAATCGCAGTGAATAGGCGGCCACCAACAGCCCCCTTCAATCAGAGGAGATTCCCGGGGGAGCCCTGCAATACCCCAGCACATCTCAGGAGAAGCCCTCCGGTGAGACGGCAGTGGGGACGTCGGGACAGACCCTTATTGCACAACTCTTTACACCAGGATGAGAATTTCCACCACCCTCTGTTCTCGCAGCATCAGCAGCAGATCTCTTTAGATGAGTCCAGAGCGTACAGTCACACCAGCGTACCGCCACGAATGCTCCACCCGGCCGCACACCCCCCTCAACAGAACCCCATCATGGTCGACCTACATGAGCAGATGCACCAGGGTCCAGTCCCAATATCATACACGGTTACCACGGTGACGACCCATGGTTTCCCACTCCACACCGGCCAGCCTATCCCAGGGTGCAACACTCAGCAGCTCCCAGCATGCTCGGTAATGTTCAGCGGACAGCACTCTCTGCTCTGCTGCCTTCCGCCTCCTCTGATCCAAGCCTGTACAATGCAGCACTTGCCAGTATCTTATCAAGCCTTTCCGCCTCTGATCTCCAGTGAACATTTTATACTGCACCCCCCTCCGCCTGTACCTCCCCACCAGCCGCCTCACCTCGCTCCACTGAGCCAGTTCGTACCTCTGCAGCCCCAGCACCCGCGCATGCCTTTGCAGAGGGTAGAGAATGAAGTGGAGATGAGAGGGGACCAGCACCCTGTAGGGGGGTTTtcctacccccccacccatcACCCACCAGCAATGCCTCCATCTGTCCCCCTCCAATACCTCCCTCACGACCCCCTACACCAGGAACTGCCCTTCGGAGTGcCATATCCCCACGTGTTGCCACGGCGTGTCAGCGGGCAGAGATACCGGCTACAGCAGCCCCTGCCACCTCCCCCGCCTCCGCCACCCTACTACCCTAGCTTCCTGCCATACTTCCTCTCAATGCTTCCGGTGCCTCCGACTTCGGTGGGGCCCGCAATCAGCCTGGACCTGGATGTCGATGATGTGGAAATGGAAAACTATGAGGCATTGCTAAACCTCGCTGAGAGGCTAGGAGAGGCCAAACCTCGCGGACTCACCAAAGCCGATATAGAGCAGCTTCCGTCCTACAGGTTCAACCCGGAGAACCaccaatctgaacaaactctGTGTGTTGTGTGCTTTAGCGATTTTGAGACTAGGCAGCTACTTCGAGTATTACCCTGTAACCACGAATTTCACGCCAAGTGTGTTGACAAATGGTTAAAGACCAATCGCACTTGTCCGATCTGTCGAGCCGATGCTTCAGAAGTTCACAGAGACGTGGAGTGAAACCTTATTCTTATTCTTCGTTTTAACCAACATGAAAGCAGCACAATAAATGGAGACCGTTCCATTGGAGACACGGGAAACCTACCGCCTACCCCTCCGTGTtccctggaaaaaaaacaaaaaaaaaaagagaaaaaaaacaacaaacatccttttttcccctcccctgAACAATAAGCAATCTAGGATCGTGTTTGGGGCCCTGTTTTACCTCTGCTGTGCATCGTGTGCGTTTGATGAAAGCTACTGCCTAGTATAACCACATAGCCACCGAGTtctggagttgtgttgtgtgtactTCTTTCGATTGCCCTTGTGTTTCTGATACTCCAAAGATTTAACATGTAAtatctgttgttgtgttttaactttgttttcGTTTGAACGGTTTCTTcgttttttctgttcttttcgTTTCGTTTTCTTCTCGATTCGGTTTTCTAGTTGATGCTAGAGTCATTCCAAGTACTGCAACAGTAATTCAAGGGAG

Function

symbol description
rnf44 Predicted to enable metal ion binding activity. Orthologous to human RNF44 (ring finger protein 44).

NR:

description
PREDICTED: RING finger protein 44 isoform X1

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K19041 RNF38_44; E3 ubiquitin-protein ligase RNF38/44

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011440 True 2356 mRNA 0.53 11 24971547 24986723

Neighbor

gene id symbol gene type direction distance location
AMCG00011441 NA coding upstream 54607 24915075 ~ 24916940 (+)
AMCG00011438 NA coding upstream 84786 24881356 ~ 24886761 (+)
AMCG00011439 NA coding upstream 147518 24817579 ~ 24824029 (+)
AMCG00011437 NA coding upstream 162723 24793372 ~ 24808824 (+)
AMCG00011435 ctnna1,LOC107594945,LOC107750356 coding upstream 729306 24209990 ~ 24242241 (+)
AMCG00011443 cltb coding downstream 16941 25003664 ~ 25014869 (+)
AMCG00011444 prelid1 coding downstream 57482 25044205 ~ 25047214 (+)
AMCG00011450 NA coding downstream 85014 25071737 ~ 25093488 (+)
AMCG00011451 ddx41 coding downstream 107806 25094529 ~ 25105105 (+)
AMCG00011449 NA coding downstream 119605 25106328 ~ 25114493 (+)
G106863 NA non-coding upstream 27869 24919851 ~ 24943678 (+)
G106871 NA non-coding upstream 30724 24939022 ~ 24940823 (+)
G106742 NA non-coding upstream 1000364 23941012 ~ 23971183 (+)
G106718 NA non-coding upstream 1138247 23829289 ~ 23833300 (+)
G106640 fat2 non-coding upstream 1430819 23539365 ~ 23540728 (+)
G106874 NA non-coding downstream 115 24986838 ~ 24991237 (+)
G106906 NA non-coding downstream 60801 25047524 ~ 25049147 (+)
G106946 NA non-coding downstream 350829 25337552 ~ 25337767 (+)
G106947 NA non-coding downstream 384756 25371479 ~ 25371745 (+)
G106961 NA non-coding downstream 679401 25666124 ~ 25667782 (+)
AMCG00011430 dctn4,LOC107749746,LOC106604160 other upstream 1126636 23835819 ~ 23844911 (+)
G106711 zgc:175280,slc7a1,LOC107719755,LOC107702889,LOC107557764,LOC103353344,LOC106563607 other upstream 1218545 23748674 ~ 23753002 (+)
G106618 NA other upstream 1614988 23356062 ~ 23356559 (+)
G106613 NA other upstream 1629782 23341308 ~ 23341765 (+)
G106242 NA other upstream 4604324 20361208 ~ 20367223 (+)
AMCG00011455 unc5a,LOC107677380,LOC107653334 other downstream 621263 25607986 ~ 25662179 (+)
AMCG00011476 NA other downstream 1369444 26356167 ~ 26360775 (+)
G107202 NA other downstream 1783715 26770438 ~ 26771214 (+)
AMCG00011488 NA other downstream 1831329 26818052 ~ 26842792 (+)
G107394 NA other downstream 2725483 27712206 ~ 27727867 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000000_03195338_03205585 RNF44 coding CI01000000 null 3194997 ~ 3205720 (-)