CI01000000_03195338_03205585 (RNF44)


Basic Information

Item Value
gene id CI01000000_03195338_03205585
gene name RNF44
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 3194997 ~ 3205720 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000000_03195338_03205585.mRNA
ACTATTCACAAAACCAATATTTTTTTGTTTCAAACAGAGTTCCGACAATCTGAGGCTGTTAAACACAAGTGCCTCTTGCACTACTGGTCCCCACCCCCCCATAGGCAGGTGTGACTCGTTCGTACGACGTCACAAATGCGACCATGGGAAGTAGCAGTGAGTAGGCGGCCATCAACAGCCCCCTTAAACCAGAGGAGGGTCATCGGGGAGCCTTGCATCACCCCTCTGCACCTCAGGAGAAGTCCTCCAGTACGACGTCAGTGGGGGCAGCGAGATAGACCTGCTGTGCACACTTCCCTACATCAGGATGAGAACTTCCACCACCCTGTCTTCTCCCAGCATCAGCAGATTCCTTTAGATGAGTCCAGGCAATATAGCCACACCAGTGCACCTCCACGCATGCTGCATACTGCCACACAGCCCCCCCAACAGAACTCCATCATGGTGGATCTTCACGAACAGATGCATCAAGGATCAGTTCCGATATCTTACACAGTTACCACGGTGACGACCCACGGTTTTCCCATCCACACCGGGCAACCTATCCCAGCCTGCAATGCTCAGCAGCTCCCAGCATGCTCGGTAATGTTCAGCGGACAGCTCTCTCTGCTCTGCTGCCTTCCTCCTCCACTCATTCAGGCCTGCACCATGCAGCACCTGCCAGTGTCCTATCAGGCATTTCCGCCATTGATCTCCAGTGAACATTTTATCCTGCACCCTAGTCCGCCAGTGCCACCCCACCAGCCTCCTCATCTGCCTCCACTCAACCAGTTTGTTCCCATACAGCCCCAGCACCCACGCATGCCTCTGCAGAGGGTGGAGAATGAAGTGGATCTGCGAGGAGACCAGCATCCGTTAGGAACATTCTCTTATCCTCCAGCACACCATCCACCAGCAATGACCCCCTCCGTCCCCCTCCAGTACCTTCCCCAGGAGCCCCTCCATCAAGAGCTACCCTATGGAGTGCCATATCCGCACATGCTGCCAAGGCGTATAACTGGACAGAGGTACCGATTACAGCAGCCTCTGCCTCCCCCGCCTCCTCCACCGCCCTACTACCCCGGCTTCTTACCATACTTCCTCTCGATGCTTCCTGTGCCTCCAACTGCTGTGGGTCCTGCTATCAGTTTGGACTTGGATGTAGATGATGTGGAGATGGAAAACTATGAGGTAAATGTTAATCCTCACACGGCGTTATTAAACCTTGCTGAGAGACTCGGAGAAGCGAAACCTCGAGGACTAACGAAAGCTGATATAGAGCAACTTCCGTCCTACAGGTTCAATTTAGAAAACCACCAATCTGAACAAACTCTGTGTGTTGTATGCTTTAGTGATTTTGAGTCAAGGCAGCTACTTCGAGTATTACCCTGCAACCACGAATTTCATGCGAAATGTGTGGACAAGTGGTTAAAGGGACCGCGGGAGCGGGCCGAGATGATGGTTTTTGGTTTTACTGTGCAATCAGACGAGTCGTGGTTCAAAGTTCCGAGGCCTGAGGTTAAAGAGGGAAACGTAGACAAAAAGGACTGGGAAACGACAGGCGTGAGTCTATCGGGAAAACTCCCGCTGGGCTTTCACCACAGTCGTAGAGACATTGAGGAAGCTGCGGCATTTTCGCTTTTGCTGTGTGCTGGCAAGGCCAATCTGACTGGCCCATGGGAACACAGGGACGAGGACAGCACACTGCCTCTGCCAGCGCCCACCTGGCTGCACTGCACAACCCTCATCCATTCTGGACTGGCCCTCTTCATCCCGCTCCCTCACACTCAGCTGTGTAACTCTTTCTCGGCTAGATCCAGGAGAACATCTCACGGGCCTCGCGCGGACTGTTCTTTTAGACTAGCAATATTTGAATTAACGAGATCCACCGCATTTCAAACACAAGAGGAACGTCGGACGGCCTCCGTCTTGCCATTCTCCAGGCCAAGGAGGTCGCATTTGCCTGTCCAGAATGACTTTTTGGGAAAGGGTGGAACACTTTGCGGAAAGCAATACGTGCAATGAGTGTGTGAGGTGAACGCAACGTTTTGACCTGATTTTGGAGGACTAGGCCTTTTGTTTTTCCTCTTTCGTGAGCCAAATAATCAATATACTCTACAAGATTTTAGCTCTGCCTTCTCAAGACCTTGACAAGCACAAACCTGTTACTAATCTTCAGATATCCTTTGTTAGTTCCTCTTTTAAAAGTATAAGTTTTTTTTAAGTGGTGTTATTTATTTCTTCTTTTGAGAGCGTTTTTGAAGGATTCGGTCGGAATACTAAAACATCTTTAGCGCGTTTTAGTTTGCCTCCCGTTGTCAGGTCTCAGGCCATGTTCACAGTGTCAAGTGATGTGAAAGAAAAAA

Function

symbol description
rnf44 Predicted to enable metal ion binding activity. Orthologous to human RNF44 (ring finger protein 44).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K19041 RNF38_44; E3 ubiquitin-protein ligase RNF38/44

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000000_03195338_03205585.mRNA True 2345 mRNA 0.51 11 3194997 3205720

Neighbor

gene id symbol gene type direction distance location
CI01000000_03172562_03175863 HIGD2A coding downstream 19134 3170391 ~ 3175863 (-)
CI01000000_03129624_03148993 PDLIM7 coding downstream 46004 3129464 ~ 3148993 (-)
CI01000000_03118493_03127143 PDLIM7 coding downstream 67775 3117708 ~ 3127222 (-)
CI01000000_03062516_03066890 NA coding downstream 128077 3062482 ~ 3066920 (-)
CI01000000_02895656_02896151 NA coding downstream 298418 2895055 ~ 2896579 (-)
CI01000000_03235219_03236826 NA coding upstream 28728 3234448 ~ 3237589 (-)
CI01000000_03245643_03246684 NA coding upstream 39655 3245134 ~ 3246721 (-)
CI01000000_03260989_03265875 SNCB coding upstream 55269 3260989 ~ 3266142 (-)
CI01000000_03267149_03267334 NA coding upstream 60778 3266498 ~ 3267484 (-)
CI01000000_03564077_03564373 NA coding upstream 357167 3562887 ~ 3567571 (-)
G2070 NA non-coding downstream 11032 3183698 ~ 3183965 (-)
G2069 NA non-coding downstream 11879 3182848 ~ 3183118 (-)
G1993 NA non-coding downstream 215136 2979190 ~ 2979861 (-)
G1928 NA non-coding downstream 312915 2881760 ~ 2882082 (-)
G1919 NA non-coding downstream 329034 2865727 ~ 2865963 (-)
G2075 NA non-coding upstream 35566 3241286 ~ 3241617 (-)
G2076 NA non-coding upstream 35951 3241671 ~ 3241939 (-)
G2078 NA non-coding upstream 63027 3268747 ~ 3269009 (-)
G2079 NA non-coding upstream 64473 3270193 ~ 3270418 (-)
G2085 NA non-coding upstream 68886 3274606 ~ 3274835 (-)
G1270 NA other downstream 1216661 1924081 ~ 1978336 (-)
CI01000000_01357072_01359013 NA other downstream 1835059 1355476 ~ 1359013 (-)
G1077 NA other downstream 1843819 1332179 ~ 1351178 (-)
CI01000000_00683745_00689383 NA other downstream 2505544 682205 ~ 689610 (-)
G2484 NA other upstream 364346 3570066 ~ 3573554 (-)
CI01000000_04079738_04081018 MIF other upstream 872401 4078121 ~ 4081117 (-)
G2730 NA other upstream 1180663 4386383 ~ 4390152 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00011440 rnf44 coding CM030133.1 CM030133.1 24971547 ~ 24986723 (+)