CI01000000_03129624_03148993 (PDLIM7)


Basic Information

Item Value
gene id CI01000000_03129624_03148993
gene name PDLIM7
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 3129464 ~ 3148993 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000000_03129624_03148993.mRNA
CTGACTCCAGGTGGCAAGGCGGCCCAGGCCGGAGTGGGTGTTGGAGATTGGGTGGTGTCCATCTCGGAGGCCAATGCAGAGGAGATGACCCACGTGGAGGCACAGAACAAGATCAGAGCCGCAACCGACTCCCTCACACTCACTCTGAGCAGGTGTGCGAGAATCGTTTATATGTCATCACATAGAGCTTTTCATCCTGCCGGAGGAGAGCAGAAGGATTCACTCACACCTGCATCTAGTCAGCCCAAGTACTCGTTTGCACCGAGCACAACCATAAACAAGATGGCGCGGCCATTCTCCGCAGCCTTTGGCAATGGCAGCAAAGGTCCCATCATCAAGCCAGTGTCGTACGCCCCCAAGCTTAACTTCAACTCGCAGGTGCCGAGCAGCACGCCGCAGCCTCACAATGGGCGGTTGCATCGCCGCCCCGGTGACCAGACTGTTCTGGGATGCGCTCGAACATGCCGTCTTCATCTGTTTTCCTCTCCACCTCTTCATCATCCCTTTGCGGGGATGTTCTGCACCTATTTTCCGCCAAGAGGAGAAGCCTTCTATGAGGAGTTGTACCCTGAGGGGAAGCACGGTCTGCGGGTGGAAAACATGGCCTGCTTCATCCCCAACGATCGCAGTAAGAAGAGACTGATCGAGGATACGGAGGATTGGCAGCCGCGCACCGGCACCACCCAGTCTCGCTCTTTCCGAATTCTGGCCCAGCTCACAGGCACTGACTTCATGCAGGACCCGGATGATGAGAACATGAAAAGGTCCAGGGAAAAGTTCCTCACTGAGATTCAGAGTCCCCGCTATGCCAGGCTGAGAGACTGGCATCACGAGAGATCCGCCCGTGCCCTCAACATCAAGTCCTGAACGCTCTGCCTCCCGGGTATCAGAAGGCCGAGGTGGCTGAGATACGGCCGCACTAGATACAAAAGCAATACCGCGTGCCAGCTATGGGTGAACACCGACCCCAGCTATACCAGGACAAAAAAAGGGGGGAGGGGGTTTATCAAGAGTTCAAGTTAATAAA

Function

symbol description
pdlim7 Predicted to enable actin binding activity and muscle alpha-actinin binding activity. Acts upstream of or within heart development; pectoral fin development; and somitogenesis. Located in actin cytoskeleton and perinuclear region of cytoplasm. Part of filamentous actin. Is expressed in several structures, including cardiovascular system; digestive system; lateral plate mesoderm; musculature system; and nervous system. Orthologous to human PDLIM7 (PDZ and LIM domain 7).

NR:

description
PDZ and LIM domain 7

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000000_03129624_03148993.mRNA True 1027 mRNA 0.56 9 3129464 3148993

Neighbor

gene id symbol gene type direction distance location
CI01000000_03118493_03127143 PDLIM7 coding downstream 2242 3117708 ~ 3127222 (-)
CI01000000_03062516_03066890 NA coding downstream 62544 3062482 ~ 3066920 (-)
CI01000000_02895656_02896151 NA coding downstream 232885 2895055 ~ 2896579 (-)
CI01000000_02738104_02750391 NA coding downstream 378911 2737658 ~ 2750553 (-)
CI01000000_02662396_02664142 NA coding downstream 464280 2662381 ~ 2665184 (-)
CI01000000_03172562_03175863 HIGD2A coding upstream 23116 3170391 ~ 3175863 (-)
CI01000000_03195338_03205585 RNF44 coding upstream 46004 3194997 ~ 3205720 (-)
CI01000000_03235219_03236826 NA coding upstream 85455 3234448 ~ 3237589 (-)
CI01000000_03245643_03246684 NA coding upstream 96382 3245134 ~ 3246721 (-)
CI01000000_03260989_03265875 SNCB coding upstream 111996 3260989 ~ 3266142 (-)
G1993 NA non-coding downstream 149603 2979190 ~ 2979861 (-)
G1928 NA non-coding downstream 247382 2881760 ~ 2882082 (-)
G1919 NA non-coding downstream 263501 2865727 ~ 2865963 (-)
G1891 NA non-coding downstream 300845 2828361 ~ 2828619 (-)
G1870 NA non-coding downstream 366896 2762290 ~ 2762568 (-)
G2069 NA non-coding upstream 33855 3182848 ~ 3183118 (-)
G2070 NA non-coding upstream 34705 3183698 ~ 3183965 (-)
G2075 NA non-coding upstream 92293 3241286 ~ 3241617 (-)
G2076 NA non-coding upstream 92678 3241671 ~ 3241939 (-)
G2078 NA non-coding upstream 119754 3268747 ~ 3269009 (-)
G1270 NA other downstream 1151128 1924081 ~ 1978336 (-)
CI01000000_01357072_01359013 NA other downstream 1769526 1355476 ~ 1359013 (-)
G1077 NA other downstream 1778286 1332179 ~ 1351178 (-)
CI01000000_00683745_00689383 NA other downstream 2440011 682205 ~ 689610 (-)
G795 NA other downstream 2971474 157542 ~ 157990 (-)
CI01000000_03564077_03564373 NA other upstream 417706 3562887 ~ 3567571 (-)
G2484 NA other upstream 421073 3570066 ~ 3573554 (-)
CI01000000_04079738_04081018 MIF other upstream 929128 4078121 ~ 4081117 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_007574 CABZ01078594.1 coding NC_007125.7 CM002898.2 51098036 ~ 51115196 (+)
striped catfish (Pangasianodon hypophthalmus) G215489 NA non-coding NC_047607.1 CM018553.1 22781323 ~ 22815252 (-)
bowfin (Amia calva) G117245 NA non-coding CM030135.1 CM030135.1 14417365 ~ 14459293 (-)