AMCG00011443 (cltb)


Basic Information

Item Value
gene id AMCG00011443
gene name cltb
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 25003664 ~ 25014869 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011443
GGGAAGTGCTTGCTCAGGCATTAGGAAGTGTTGCGCTCAATCCCAGTCCCCGAGTGCCACCGTGAACACGCCAGACAGTGCATTATTGTTCTCTTTGTGCCCTGCTATACCCCCAGAAGATGGCTGACGACTTCGGATTCTTCTCCTCGTCTGACAACGGCGCCCCTGCGACGGAAGAGGACCCGGCGGCGGCCTTCCTAGCCCAGCAAGAGAGCGAGATCGCCGGGATCGAAAATGACGAAGGATTCGGGGCATTGGAAGGGGCTGGGCAGCCTCAGCAGCAGCCTCCGCCGCAAGCTAATTACGatAGCTTTGGAGGAGACGTTTCTACTGCAATAAATGGAGATATGTTTCAGGAGGCCAACGGCCCCACTGACAGTTACGCTGCGATCGCGCGGGTCGACCAGCAGAGACAGGAGCCCGAGAGCCTGCGCAAGTGGAGGGAGGAGCAGAAAGCCCGGCTGGAGGAGCTCGACTCGGCATCCAAGGCTGCGGAGACGGAGTGGAAAGAGAAGGCCAAGAAGGAACTGGAGGACTGGCACGTCCGTCAGAATGAGCAGATGGAGAAGAACAAAGCCAACAACAGGGCGTCGGAAGAGGCCTTCCTCAAAGAATGTGACGAAGACACCCCGGGGTCAGAGTGGGAGAGGGTGGCACGGCTGTGCGACTTCAACCCCAAAACCAACAAGCAGTCCAAGGACGTGTCTCGCATGCGCTCCGTGCTCATAACCCTCAAACAGACGCCTCTGGTGCGCTAGGCTGGAGCTGCCATCTCTCTCGGCCGCCCACTCACTCCCCAGTTCCCCGAATCACGCTCTCTAACTCCTTTAGTAGTACTAGCTATACTGCCTCGTCTTTGTTGCCTGGACCAAGGAAAGTTAATCTGTTACACATGTTTCTTTCAAGCAccttaatgtttttctttttgtttgttccctTCACCTAAAGATGcagtattcttttatttttgaaagaaaggtTGCTTTCTGCAGTAATTCACACTTCACAGCCTTCTCCCTTGATCTAGTCTACGAACCACATTAAGAAATTATTCTGCTGCAGTTAACACAAGCTGCATTCAGACACCGTGCAGATGAGGATCGGAGTCCGCAGTCTGCCTTTGAATTGCTGCAGTTGTAAAAGAGAACACGGTTGTATTCCTAACCAGAGGGTGGAGGTGTTGTACATGAAATTCATGCACATTTCCTCCAATTGAGGTCCCTCCCCTCCTTGAATTCATTACAATCTGCGTTGTTTACTTGTATAATAATCTATTAACTGGGAAAATGTGCCTACCATCCACTTCAAGTTGCCAATGCACTGCTGCCTGATCTTTATATAGTAGTGATATACTGCATCTTTAAGTGTTTCCTTTTTGACACACTGTTTTCTCTCCAATGTACTGTAATTCTTGTCTTTTCAATTCACCAGTGCCATAAGCTGCTGTAGATGCTCACATTTTGCTGCCTGTAATAGGATTGGGATTGATGCTTTATAACAGTAGGTTAAGTGTGGTACTGTTGCTGTTAACTAGCTTAAGGTAAGACAGCATAAGACCCAAGAGagaaacttttttattttttatttacagattagTGATTTTTTGCAACTGCCCCCTAAAAAGAAAACGCACCTTTTTTATGAGTCCTGGCCTCAGACACTGTTCTGCTTCTATTTCAGTTGGCTGCTTAACTATATACGCCTGTCATCCTTATTTTCCAGGTGATAATGTTCTTTACATCATTGAATTTTGAAGATATACCTCAACtctgcaaacaaaatgttacaaatcCTGGGTTTTCAACAGtctaatggatttaaaaaacacaatttctcaAGAGGTCCCAAAAAAATGTCCCTTTCTCATAATTTCACGGTGGCTTGTTCTTTGATACCAAGTTTCTTAGATTTGAAATACAACAACACTGCTTGTCAATATTGCTTTTTAGTGAGGAAAATCTCACGGTTGGCGGAAGAGCTGCATGCGTAGATGTTGTGCGTTGTCTGTCACACCACAGAAAGcgattttttaaaacaaattcgatgaagaaaataaaaattgatgtcCTTCTCAAAATGGAAATTGTTCTCGGACATCATGAGACTGGCTTTGATCATGGAGACTGTGGGTAGCGCAAAATAAAACCATCGGCCTCTTGCCAAGGTCTACTTTATCTCCTTTGAAATGGCACCGTCCACTGATCAGGGTCtgtgtgcttgaaaaacacggGTCTGCTGCTAGTCCCTCCGTCCGCACTGCATGTAATGCCTTGTTGTATTTGCCAAAGTATGGTAGACAAACTTGGTCTTTAACCAACCCCCCACCactccacacaaacacacacaccactgtcTCACACTTTACTTTGACCTAGTTTTGAAAGCCGATTCACCAATTACTTGTAAACCACTTTGAGTGACCTTTAAAGGGCTTTTACATGCATATTATCAGTAAGTTGtgaagcattttcattttcttacagGAAAACCTTTTGACTTAAGAGTATGACATAAATAAGCGTTTCTGTCATAGGTCTAGCTGACCAGTGTGCCGAGTTGTGGTCATCTTTGTAGTATTGTGATGCTTCTAGTCGAGATATGGTATTCCCTACAGGGAGAATATATACTACACCAGTGTAATGTTGTAGAAAACACAATGCTGTTATTGAACAGGTCTGTTTGCTATTACTATAGGATAGTAAGATTACACCTAGAATCACCAGACATtgtcaagtgtttttttaatgttcccataTGTCGTATTTTGTGGCCTTTCCAAGAACCTTGCTCCTCTACTGCCAGAAAATGAGTGCCTCTTCAACCCCAAgacctgcttttctttttcggacaattttgttttccttctcttcttgCTTTTGTGTTATAATTCCCATCAAATGACTACAGCTTCGCAGTGCATCACAAACATCACCAGGGAATCTTcctactgaaaatgtatttccaaagcAGGAAGACACAAGCGCATGCTCTCTCAGCCTTCATCCCCCCAAGTTCTGgtttacatattttgtactCATCCTCACAGTCGAAAAAATGTGAAATCAAAAGCAATGCTAAGAGTGTTCAGTATCCATCGACAAGATTTCCGACCACATATACTTAATGAGGGGGAACTTCCCTATAATGTGGAAGAACAAAATTGGTTCAGACACTCCATGAAACTAAACTGCAAGTGGGATGTTTATTGtttacattgattttgtattttgtatcagANNNNNNNNNNCCCCCC

Function

symbol description
cltb Predicted to enable structural molecule activity. Predicted to act upstream of or within intracellular protein transport and vesicle-mediated transport. Predicted to be located in clathrin-coated pit and cytoplasmic vesicle. Predicted to be part of clathrin coat of coated pit and clathrin coat of trans-Golgi network vesicle. Orthologous to human CLTB (clathrin light chain B).

NR:

description
PREDICTED: clathrin light chain B isoform X3

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0030130 clathrin coat of trans-Golgi network vesicle cellular_component
GO:0030132 clathrin coat of coated pit cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K04645 CLTB, LCB; clathrin light chain B

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011443 True 3253 mRNA 0.44 5 25003664 25014869

Neighbor

gene id symbol gene type direction distance location
AMCG00011440 rnf44 coding upstream 16941 24971547 ~ 24986723 (+)
AMCG00011441 NA coding upstream 86724 24915075 ~ 24916940 (+)
AMCG00011438 NA coding upstream 116903 24881356 ~ 24886761 (+)
AMCG00011439 NA coding upstream 179635 24817579 ~ 24824029 (+)
AMCG00011437 NA coding upstream 194840 24793372 ~ 24808824 (+)
AMCG00011444 prelid1 coding downstream 29336 25044205 ~ 25047214 (+)
AMCG00011450 NA coding downstream 56868 25071737 ~ 25093488 (+)
AMCG00011451 ddx41 coding downstream 79660 25094529 ~ 25105105 (+)
AMCG00011449 NA coding downstream 91459 25106328 ~ 25114493 (+)
AMCG00011453 NA coding downstream 154631 25169500 ~ 25170670 (+)
G106874 NA non-coding upstream 12427 24986838 ~ 24991237 (+)
G106863 NA non-coding upstream 59986 24919851 ~ 24943678 (+)
G106871 NA non-coding upstream 62841 24939022 ~ 24940823 (+)
G106742 NA non-coding upstream 1032481 23941012 ~ 23971183 (+)
G106718 NA non-coding upstream 1170364 23829289 ~ 23833300 (+)
G106906 NA non-coding downstream 32655 25047524 ~ 25049147 (+)
G106946 NA non-coding downstream 322683 25337552 ~ 25337767 (+)
G106947 NA non-coding downstream 356610 25371479 ~ 25371745 (+)
G106961 NA non-coding downstream 651255 25666124 ~ 25667782 (+)
G106966 NA non-coding downstream 659547 25674416 ~ 25677419 (+)
AMCG00011430 dctn4,LOC107749746,LOC106604160 other upstream 1158753 23835819 ~ 23844911 (+)
G106711 zgc:175280,slc7a1,LOC107719755,LOC107702889,LOC107557764,LOC103353344,LOC106563607 other upstream 1250662 23748674 ~ 23753002 (+)
G106618 NA other upstream 1647105 23356062 ~ 23356559 (+)
G106613 NA other upstream 1661899 23341308 ~ 23341765 (+)
G106242 NA other upstream 4636441 20361208 ~ 20367223 (+)
AMCG00011455 unc5a,LOC107677380,LOC107653334 other downstream 593117 25607986 ~ 25662179 (+)
AMCG00011476 NA other downstream 1341298 26356167 ~ 26360775 (+)
G107202 NA other downstream 1755569 26770438 ~ 26771214 (+)
AMCG00011488 NA other downstream 1803183 26818052 ~ 26842792 (+)
G107394 NA other downstream 2697337 27712206 ~ 27727867 (+)

Expression


Co-expression Network