RNA id: AMCG00011435


Basic Information

Item Value
RNA id AMCG00011435
length 1596
RNA type mRNA
GC content 0.51
exon number 11
gene id AMCG00011435
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 24209990 ~ 24242241 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTGCAGGCTGGCAGGAAGGAGAGAAGCGATGCCCTCAACACAGCCATCGATAAGATGACCAAAAAGACCAGAGATCTGCGCCGACAGCTGCGCAAGGCAGTAATGGATCATGTTTCCGATTCCTTCCTGGAGACCAATGTTCCCCTTCTGGTCCTTATTGAAGCTGCGAAAAATGGCAATGAAAAGGAAGTGAAGGAGTATGCACAAGTCTTCCGTGAACATGCCAACAAGCTCATTGAGGTTGCCAACCTGTCTTGTTCCATCTCCAACAACGAGGAAGGTGTAAAACTGGTCCGCATGGCAGCTTCTCAGCTGGAGATTCTCTGCCCACAGGTGATTAATGCTGCACTGGCTCTTGCTGCCAAACCAAACAGTAAAGTGGCACAAGACAACATGGATCTGTTCAAGGACCAGTGGGAGAGGCAAGTGCGTGTGCTGACTGACGCTGTGGATGACATCACATCCATTGATGACTTCCTGTGTATATCAGAAAACCATATCTTGGAGGATGTGAACAAGTGTGTGATTGCACTACAGGAAAAGGATGTGGATGGGCTTGATCGTACTGCTGGGGCTATCAGAGGCAGGGCAGCAAGGGTTGTCCACGTGGTCACCTCTGAAATGGACAACTATGAGCCTGGTGTCTACACTGAGAAGGTCCTGGAAGCTACAAAGCTTTTGACTGACACAGTGATGCCCCGTTTCAGCGAGCAAGTGGAGGCTGCCGTGGAAGCCCTGAGTGCCAACCCAGGGCAGCCCGTGGACGAGAATGAGTTCATTGACGCATCTCGGCTGGTTTACGATGGTGTGAGGGATATCCGGAAGGCTGTACTGATGATCAGGacaCCGGAAGAGCTGGACGACTCTGATTTCGAGACAGAGGAGTTTGATAATAGGAGCAGAACCAGTGTGCAGACGGAGGATGACCAGCTGTTTCATGGGCACAGTGCTCGGGCTATTATGGCACAACTTCCACAAGAACAGAAAGCCAAGATTGCCGAACAGGTTGCCAGCTTCCAGGAGGAGAAGAAATGTACAATTACCAAAATCTCATTTCTCAGGGGGAAAGGGCCACTGAAGAACACATCTGATGTAATTAGCGCAGCAAAGAAGATTGCTGAAGCTGGTTCCAGAATGGACAAACTGGGTCGCACCATTGCAGATCATtGCCCTGACTCTGCCTGCAAACAGGATCTGCTGGCCTACCTCCAACGTATTGCCCTATATTGCCACCAGTTGAACATCTGTAGTAAAGTCAAAGCAGAGGTGCAAAACCTGGGAGGAGAGTTGGTGGTTTCTGGGGTGGACAGTGCCATGTCTCTGATCCAAGCAGCCAAGAACCTGATGAACACTGTCGTGTCCACTGTGAAGGCATCTTACGTGGCTTCCACCAAGTACCAGAAGTCCCAGGGCATGCAGTCCCTGAACTTGCCTGCCATCTCCTGGAAGATGAAGGCCCCCGAGAAGAAGCCTCTGGTGAAACGCGAGAAGCAGGATGATGGCCAGACCAACAAAGTCAAGCGGTCTTCTCAGAAGAAGCACATCAACCCTGTCAAAGCTCTCAGTGAATTTAAAGCCATGGACAGCATTTAA

Function

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0015629 actin cytoskeleton cellular_component
GO:0005902 microvillus cellular_component
GO:0005938 cell cortex cellular_component
GO:0030057 desmosome cellular_component
GO:0016342 catenin complex cellular_component
GO:0005198 structural molecule activity molecular_function
GO:0051015 actin filament binding molecular_function
GO:0045296 cadherin binding molecular_function

KEGG:

id description
K05691 CTNNA; catenin alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133535 lncRNA upstream 238807 23941012 ~ 23971183 (+) True G106742
TU133524 lncRNA upstream 365079 23841932 ~ 23844911 (+) False AMCG00011430
TU133503 lncRNA upstream 376690 23829289 ~ 23833300 (+) True G106718
TU133407 lncRNA upstream 669262 23539365 ~ 23540728 (+) True G106640
TU133398 lncRNA upstream 688059 23382282 ~ 23521931 (+) True G106631
TU133666 lncRNA downstream 677610 24919851 ~ 24943678 (+) True G106863
TU133676 lncRNA downstream 696781 24939022 ~ 24940823 (+) True G106871
TU133680 lncRNA downstream 744597 24986838 ~ 24991237 (+) True G106874
TU133681 lncRNA downstream 744597 24986838 ~ 24991174 (+) False G106874
TU133720 lncRNA downstream 805283 25047524 ~ 25049147 (+) True G106906
AMCG00011434 mRNA upstream 35486 24148957 ~ 24174504 (+) True AMCG00011434
AMCG00011429 mRNA upstream 271952 23909700 ~ 23938038 (+) True AMCG00011429
AMCG00011430 mRNA upstream 365123 23835819 ~ 23844867 (+) True AMCG00011430
AMCG00011426 mRNA upstream 396274 23786963 ~ 23813716 (+) True AMCG00011426
AMCG00011425 mRNA upstream 434482 23760289 ~ 23775508 (+) True AMCG00011425
AMCG00011437 mRNA downstream 551131 24793372 ~ 24808824 (+) True AMCG00011437
AMCG00011439 mRNA downstream 575338 24817579 ~ 24824029 (+) True AMCG00011439
AMCG00011438 mRNA downstream 639115 24881356 ~ 24886761 (+) True AMCG00011438
AMCG00011441 mRNA downstream 672834 24915075 ~ 24916940 (+) True AMCG00011441
AMCG00011440 mRNA downstream 729306 24971547 ~ 24986723 (+) True AMCG00011440
TU133489 other upstream 456988 23748674 ~ 23753002 (+) True G106711
TU133383 other upstream 853431 23356062 ~ 23356559 (+) True G106618
TU133378 other upstream 868225 23341308 ~ 23341765 (+) True G106613
TU132939 other upstream 3842767 20361208 ~ 20367223 (+) True G106242
TU132823 other upstream 3870903 20296011 ~ 20339087 (+) False AMCG00011365
TU133992 other downstream 2113926 26356167 ~ 26360775 (+) True AMCG00011476
TU134100 other downstream 2528197 26770438 ~ 26771214 (+) True G107202
TU134126 other downstream 2575811 26818052 ~ 26830055 (+) False AMCG00011488
TU134311 other downstream 3469965 27712206 ~ 27727867 (+) True G107394
TU134734 other downstream 5455360 29697601 ~ 29699419 (+) True G107741

Expression Profile