RNA id: TU133535


Basic Information

Item Value
RNA id TU133535
length 5633
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G106742
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 23941012 ~ 23971183 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGCGCAGGGCCCTGACTGAAGAGGAGCAAGAGCTCTTCAAGGACTTTGACTATGTGGCCGATTGGTTCTAGTGCCAGCGCTGTGGAAAAGAGACAGACAGtccaacagagagagaaagacagtccaacagagagagaagaagtcacacagagagagacagacaggcattGAAATCAAGAGTGAAGAACATCAGCTCTCTCCCTACCCTCCCTTTCcttattcattatttcaataGTGTTGTGAATTACACAACCCAGCCGGACTCAAGCAAGGAGTCCCTCTAGCGATGGAGAAAGTTATATACATGTAGATGACAAAGCAGGCAAATAGTGCCCTCTTCAGTTCAAATAAGTGAATTTCAATCTGGAATGGGAACACAtgaattgggggaaaaaaatcagaatCGGGGAAAACTGGCTTgtaaaatgcatcttaaatgtAAACTTAACTTATTAAATCAAGCTCAGGCCTACAAAAGAAGCACCATTTCCATCAGCATCACCCTCCATATTTTGTTTAACCACAATTAACCAGTTTTCTTGcctaaaaaaaatctaattaccACAACTGTGTCATAAATCATTTTATTCAATATGAAAAAGAAGCATATTTATAAGACAATATACAGTGTAACAGACCATGTCCAACAatcaatgtctttttatttattttcatcaaaacTAGTAGTTCTAACAAATTGTTTTAGGAATCAAACTTGTAAACAATTCAACATTGTTAACGTTTACtacttggaaaataaaaatgacagtgattttttttttttctttcacgtTCGTTTCTCCTTGAATGACTAATGGATAAGGACCTTGTAATACTGCATCACAGATCATTCAAAGTAGTGAGTGGGGGAGCAGTAACCTCAGCACCCTCAAGAGACcaggtttaaaaacacaaatgtaagaCTGAAGTGTAACAgtgtattatgtttaattgtaCTGGATTAGTAATATTACATCACAAAACATAGGAGCCCAACTGCGGTAATTTCACTGGGGCCTCATGCAGCTCATGATTTGAACAAAATAGGAACCCTGCCccctttaaaaaagtaaagggAGGATGGTTTTATACAGTAACTAGTGTATACCCTAATGATAACTGAGCTTCACATGTACTGAGCCTGTGCACAGACAATAGCTTTTGTTTGTCaggttaaaacaataaaatgaaaatacagaaaacaaacagttcAATCCTATTCAGTGAGGTTGAAAGCACACTAACATACAAACAATGACAGGGTGGACACcaaaaacgaaacaaacaaaaaagaatatataCTATGAGAAAATAACATGTACTGTcctttacttaaaaatataaatatgctcTTACATTTTGGAGTACTAAAATATGTGGTTGGTTGCGATTCACGAATGGTACACAAATACAAAGACCCAGATATTAGTATTGTAATCTGGGGAGCATGGAATATGCCAGCCAGCATCATGATAGCGATTAGAAATAATGGAACGCCACTGTGGATTGATTTTTTGTGGAAACTGCAAAAGCTAGATATCCCACCTCTCCCCCTTCAAGTTACTGGACAAGAGAAGGACAGATCTACAAAGGGACGTGAAATCGATCAGATCAACATGGAATCCAAACAATCAAAACGAATAAAAGAATGCTAAATTAGAATTCTGAAGGTAGATGCTGCCAACAATGTCTTCATTGATGGCTATATTTTCGGTCCATCTCTATTCTTTATAACTGCTCTggcatataaatatttaaagaatatcTTCCAAGTGGTTGAACAATCAGAATTCCCTTCATGACCTAATGGCTGTAAGTCACTGGAATAATTCTGCTGTTGCCATGTGCTGTGCTGAATCAGAGCGCAAAGTCAAGTGAATAGAGACTGCAACATAACAGAtatttggagaaaataaaatatgcactAGACTGACAGGATTCTGCAGTCATAACAGATTCTCTTCATCACCcagcacagaaatgtaaattggTAAGTCTGATGTTCTGCGGTACACAAAGAAACAGGAGGTAATAAAaatcctgtcttttttttttttttttttttaagactttgttttctgtcttgaggTAGAGTCACGGGTTCATACAAGTGCAGACATTTTGACAGCTTGCGAacacaatgatttattttcttggtcTATTGTTTGTGATTACTCAGTTTAGAATAGGTCCCAATTTATCGCCAAAGACACACTGCCAGATGCGGATTTAAGTATCACGGAGAACAAAAGGCTAAATCATATACATGTTGACCTACAATTACAACATTTGCATTGATGTAGTACTCCCTGCAACATGTACTAAAATAAGACAATGTACAATTAAACGTGagaaactttattaaaaaagttaaataaaaatggcaaaaagtCTAAAAGACAAAACGTGTCTTATTCAGTGATACTACACTGAAGACACCGGAATCAAGACCAAAACAACAAGTGCCGATATCTTACAATGCTTTAACAACGGTTTCAAACGACGGGAATCGCTCCAACTCATCTGCTTACAATTATTGCTTCTTCATAGACAGCCGCAATAAGCCAGAGACCTTCCCTTTTTACCTTAAAGACATCTGTagagaatttaattaattatggcAATCTATTTTGAGATATCGGGCCCATCAGTGGGCTTTATTAGTTTGTTCCAAGCCGAAATTCACTTACCAGGCAGTCCAACTAAACAACAAGcacaatctaaattaaaaaagatagctcttgtttgaaataaaataaaatgtaaaggatGCGGAGGGCATTAAGGTACTTTTATATAATCAAGGTGCTGACCTGTATGTGCGAGACAATTCGACAGGAATGGAGTACAATGTAAGGAAAGCGAGATTGTACTaaatcgcacacacacacactatgagAAAAACAGATTATGGCCAGTATTTCTGTACCAAGAATGGTACAAGTTCAACATGGAGATGCAGAGAAACTGCCAGGGAAGCTCCTCAGTCGTAGAGAAATGCAAGGACAGGATGTCATGGGTCTGAATGGGAAGACGCATGacaattgcatatttaaaaaaatgctattcATTTAAATTCTGGGCCGCACTATATTTCTATCCAGCACTTGTTTCAACTGTGTCAGCAAAAATGGGTAGAAATTAAACAGTCTGGAagtttgataaatataataataataatatgtgacTAAAGAACGTTAGGCAGTTCGCACACAGGTAGAAGTGCTGTAGCTTTTGTGTTGAAATTCACCGAATGTAGACTATTTTGCACACAGACATCTACATACATGTCTGTGAGAGGCAGTTGAGCTGAGTTTTCATCAGACCCTACACTTAAGACTCTAACATGCATGATATTTCTCCAGACTATTGCAAGCACTCATTAACATGCCAACATGTAGTCTTCTCCATTTCCCCCAAAATATATATCACCACTGAAGGAGCAGTTAGTGACTTCTGTCAGAAAGGATGGAATGCAAAGGCTTAGAAAATGATCTTAAAGAGAcggcatttgaaaaaaataatatcttcCACTGGAAGCcacaatatatttatctttaaataaaaatgtctataTAGTTTCCTGTGTTATGATGCCACTTGTGATTTAAGACAGTTTGTTGGCACTACAGGAGGCAAAGTGTTGGCACTCGCATATCAGTGGCAAAGAACCACTGACCTCATTTCTGAGATATTGAACTTAGATTATATATAATGCCTTAGTAAGACACGTAAGCTGAAGGTGAAGAACAGAACAAGGAGAAAATAGCATGTTAGACTGCAGGTACATAGAAGCTTTTTACTGTCATTTCTGACAGGAATGTACTTGcgtgtaaataaaaaaaaaacatcattgcCCAATTCAACACATTACAAACAAAGGATAGCAGTGTTCTTTTCAAGCAGAATgtactaaaaaagaaaagaaaaagatggagTGGCCATTGCCAAAATACAATCAACCCTGTCTTTTGGAGTTAGAATGGCTGAGCAATTTCGAGCATGTTCGTTTTTCTTTTCCTAGGGCTTAACATTACTATAAAGGGTTGGCTTGTTTCACCAGGGTGTTTAGTCCCTGTCGAGGAAACTGCAGCCCTTGACATTTCCAGGTAATGGGAGGCACTGGCACAGCTTCAACACTGTGAGAGAAAGTCTCTCGtctacaaattacaaatatatctcAGTATTGGTCACAACTGTTTTTACAGACAAGTGTGAAGCAACAGATCTACCGTGTAATAGTAGAATGCAGTGATCATCCCAAAGGTGCATTATATTGACTATACCCGCAACGCACTCATGGTTGAGTGATTACAATCACCACAATCTACTCCTCTGTCTTTCTACCAGATTTTAGAGAAACAGCAAAAGGAAAGTGAGGAAAAAAGTTAAGACAAGGTTAATAGAACATACATATTGTTGAGAACATAAATGTTGGCTTCTGAAAtttccccaaaataaaataatgctaaCTAATGCCTAGTAATAATGAACTTAAACGTCCTGCCTATAAGGCCAGAAGTACTAAGTATTACACAGATAAACGCCTTCCTTTTAGtggcttaaaaaaacatacaaaaataaacagacagcaTTGAAAACAACTAGATTATCATAATAAAAGGATAAAAGAGAAACAGATGGTTCCAGGTTTAAAATGGTTAATAGGATTCTGAACACTGGTTTTATATTTACTCGGCCACTCTTACGACGCACAAGGTTTCAACCCATCAGCTGGTCAGTTTGAATCTAAGATCCCCAGAGAGTTTGTTGACAGATCGCATCCTCCGTCGTTCTCACTCCTCCGACGTTACGTCCACCAAACGATGGATATTGAACTCAATAGGGACCCGCAGCCAGAATCAAAACTGAAATCCGAGCTAACTGATTTCTGTCAGCCTATCAATTCAGGATGGAAGGGCTTGAGTGGTGAAGACCAAAAAATTAAAGAGGGGGAGGCGAGCAACGCAAACTCAAAACTGAACAAAAGGTTCTGCTTGGAATGGCAGACACTATTAATCTGATCCGCTGTTGTCGTtactcttattattttatttttttatcattatcattattataacaataataataaagaatggCAGTCTCCAAACTGGTATTTTTTCTCCCTGTGCTCTAGGGTAAATATTTTAACCTTCTCTCAGGAGTGTGTGCTCTGTGATCGCTCACTTATGATCTTCTGCAAAATCActcaaaaggggaaaaaaaaaaacagatcaatcCACAGGAATCCACGTTTCAAGACCCCTAACCCCCCCACGCTGCTGCAAACACTGCTCCATGCATTAGTCCAGTTTACAGCTGCTTGGCAGGGGAGGCCGGGAGTTGGACTGTTTCTTGCCACTGTCATGTCTTCAGGGCCTGGCGTCACCAGTTTGCCTTTACTGCTTTAATGTCGCTCACCAGGTTTTGTGCCAGGCAGATTCCGAAGATCTAAAAAGGCATGAGGGCAAGATTGTaaataatattcaatacaaaaatatgattcTATTAATAAGTATAAGGGCAAACagtattaaatacacatttaaaagaaaacaaatgagagagagagaacctaaaaagcagttttcataaattatattaaaattagttttaagtCAATGGCATCAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133524 lncRNA upstream 96101 23841932 ~ 23844911 (+) False AMCG00011430
TU133503 lncRNA upstream 107712 23829289 ~ 23833300 (+) True G106718
TU133407 lncRNA upstream 400284 23539365 ~ 23540728 (+) True G106640
TU133398 lncRNA upstream 419081 23382282 ~ 23521931 (+) True G106631
TU133385 lncRNA upstream 579998 23356734 ~ 23361014 (+) True G106619
TU133666 lncRNA downstream 948668 24919851 ~ 24943678 (+) True G106863
TU133676 lncRNA downstream 967839 24939022 ~ 24940823 (+) True G106871
TU133680 lncRNA downstream 1015655 24986838 ~ 24991237 (+) True G106874
TU133681 lncRNA downstream 1015655 24986838 ~ 24991174 (+) False G106874
TU133720 lncRNA downstream 1076341 25047524 ~ 25049147 (+) True G106906
AMCG00011429 mRNA upstream 2974 23909700 ~ 23938038 (+) True AMCG00011429
AMCG00011430 mRNA upstream 96145 23835819 ~ 23844867 (+) True AMCG00011430
AMCG00011426 mRNA upstream 127296 23786963 ~ 23813716 (+) True AMCG00011426
AMCG00011425 mRNA upstream 165504 23760289 ~ 23775508 (+) True AMCG00011425
AMCG00011420 mRNA upstream 263736 23663024 ~ 23677276 (+) True AMCG00011420
AMCG00011434 mRNA downstream 177774 24148957 ~ 24174504 (+) True AMCG00011434
AMCG00011435 mRNA downstream 238807 24209990 ~ 24242241 (+) True AMCG00011435
AMCG00011437 mRNA downstream 822189 24793372 ~ 24808824 (+) True AMCG00011437
AMCG00011439 mRNA downstream 846396 24817579 ~ 24824029 (+) True AMCG00011439
AMCG00011438 mRNA downstream 910173 24881356 ~ 24886761 (+) True AMCG00011438
TU133489 other upstream 188010 23748674 ~ 23753002 (+) True G106711
TU133383 other upstream 584453 23356062 ~ 23356559 (+) True G106618
TU133378 other upstream 599247 23341308 ~ 23341765 (+) True G106613
TU132939 other upstream 3573789 20361208 ~ 20367223 (+) True G106242
TU132823 other upstream 3601925 20296011 ~ 20339087 (+) False AMCG00011365
TU133992 other downstream 2384984 26356167 ~ 26360775 (+) True AMCG00011476
TU134100 other downstream 2799255 26770438 ~ 26771214 (+) True G107202
TU134126 other downstream 2846869 26818052 ~ 26830055 (+) False AMCG00011488
TU134311 other downstream 3741023 27712206 ~ 27727867 (+) True G107394
TU134734 other downstream 5726418 29697601 ~ 29699419 (+) True G107741

Expression Profile