AMCG00012151


Basic Information

Item Value
gene id AMCG00012151
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 11738177 ~ 11750624 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012151
ATGCCCATCATACACAAGGAGTACATGCTTAACCAGAGCTACACAGGCTATGACATCACCCTGGTGAACCTCAGCCAGACAGTGTCCAAGACCCGGTACATCAGCCCTGTCACTCTGGCAAAGGCTGATGCTGACGACTTCACCCAGGGCTGGGAGTGCTGGGCGACCGGCTGGGGAACATCAGAGAGAACGTGTCCAGCCATCCACATCTTCGTCCCCATCCTCGTCCTCATCTTCATACTCATCCCAGAAACTCCATAGTGGGGGGTGAGGATGCCAAGGAGGGACAGTGGCCATGGCAAGTGTATCTGGAGATTACTACGATGGATGGATACCAAGTCGGTTGTGGCGGCTCCCTGATCAGTGACCGCTGGGTTCTCACTGCAGCGCACTGTGTGAAATTCCCCTTAAAGTGGTGGGAATCTGAGGTGATCCTGGGGGCGCACTCACTGGATGAACCCAGTGAGCATGAAGTGAGACGCACCATGAATAAGGTCATCTTCCATGAGGAATATATGGACGTCAAAAAAGGCTTTGACATCGCGCTGATAGAGCTCAATGCCACAGTGACCACCAACGCTTACATCAAACCCGTCACGCTGGCTGGGGCTGAAGACGAATGCAGCGTGGACTGGGAATGCTGGGCTACAGGCTGGGGGGCTTTCCTGGAGGGTGagcCTCTGCCAGAACCTAAAACCCTACAAGAAGTTCAGGTCCCTGTTGTCCACAATGAGCACTGTATGGAACAGTACTATGGGCGTTTTTTTATCTTTCCAGAGATGATGTGTGCTGGGGAAGAGGGCCTGGATTCCTGTCAGGGTGACTCTGGGGGTCCTCTGGTCTGTAGGAAGACTGGGCAGCCCTGGGTCCAGGCTGGGGTTACCAGCTTTGGGGCCGGCTGTGGTCAAGAAGACTCTCCTGGGGTCTACACCCGAGTGTCGAGCTATCGAGACTGGATCAAGAAGCACAGTGGTGTCTGAGGCCCCTACTGAAGCCCTACCAGGCTGGCTCACTGCACGCTCTGCTGCACCCAGATCTGCTATCTGTTCATATCAGCAGTTTATATCACCTCCTTTCTCCTTGTGTGCTCCTGCCCTGTGATGTGTTTActactctttctctctcactccctgtgCATGATTACTACAGATCTCTCCAACTCCATCTCTCCTTGTCTCTCTTTCACGCTGTCTGCAGATCCTACAATGTGTTCATTCCTGAGGGATGTTTGATATAATTTGCTGCTCTTGGCTCTGCTCTGGTATGAGAGATCAGTTGTACTGTGACTCTGCTGAACAGCTCAATAAAAACGCAAAGCATTCAAA

Function

GO: NA

KEGG:

id description
ko04612 Antigen processing and presentation

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012151 True 1325 mRNA 0.53 5 11738177 11750624

Neighbor

gene id symbol gene type direction distance location
AMCG00012150 NA coding upstream 13071 11719340 ~ 11725106 (+)
AMCG00012153 NA coding upstream 37795 11690723 ~ 11700382 (+)
AMCG00012148 NA coding upstream 55249 11680310 ~ 11682928 (+)
AMCG00012143 NA coding upstream 66379 11657389 ~ 11671798 (+)
AMCG00012144 NA coding upstream 112490 11619304 ~ 11625687 (+)
AMCG00012155 NA coding downstream 47953 11798577 ~ 11803125 (+)
AMCG00012159 fbxl19,kdm2b,LOC107694447 coding downstream 150923 11901547 ~ 11913954 (+)
AMCG00012162 NA coding downstream 240891 11991515 ~ 12028909 (+)
AMCG00012161 NA coding downstream 282723 12033347 ~ 12036522 (+)
AMCG00012167 stx1b,LOC108228377,LOC107397241,LOC102220115,LOC107666328,LOC103393442 coding downstream 334734 12085358 ~ 12095939 (+)
G134749 NA non-coding upstream 233529 11503960 ~ 11504648 (+)
G134698 NA non-coding upstream 436112 11300334 ~ 11302065 (+)
G134692 NA non-coding upstream 504294 11233681 ~ 11233883 (+)
G134615 NA non-coding upstream 755383 10967276 ~ 10982794 (+)
G134556 NA non-coding upstream 884886 10849858 ~ 10853291 (+)
G134779 NA non-coding downstream 68633 11819257 ~ 11844832 (+)
G134877 NA non-coding downstream 165720 11916344 ~ 11918265 (+)
G134879 NA non-coding downstream 173644 11924268 ~ 11926131 (+)
G134923 NA non-coding downstream 368607 12119231 ~ 12119660 (+)
G134942 NA non-coding downstream 397443 12148067 ~ 12158458 (+)
G134743 NA other upstream 292014 11436379 ~ 11446163 (+)
G134697 fus,LOC103040960,LOC107658502 other upstream 444278 11242229 ~ 11293899 (+)
AMCG00012112 NA other upstream 677147 11049065 ~ 11061030 (+)
G134613 NA other upstream 803070 10926606 ~ 10935107 (+)
AMCG00012088 NA other upstream 1054080 10629684 ~ 10684097 (+)
G134898 NA other downstream 280273 12030897 ~ 12031490 (+)
G134955 NA other downstream 421914 12172538 ~ 12172802 (+)
G134958 NA other downstream 430437 12181061 ~ 12181320 (+)
G134968 NA other downstream 440931 12191555 ~ 12192408 (+)
G135026 NA other downstream 815588 12566212 ~ 12716115 (+)

Expression


Co-expression Network