AMCG00012211


Basic Information

Item Value
gene id AMCG00012211
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 13127168 ~ 13131962 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012211
AAAGTCCCACCTAGTGTCAAAACATCTTGGTGGTGAATATGGGACCAGTTAGTAGCCTTAACTTTAATGCCATATCTGGTCCTGGTCTCTGAGTCAATTCTGACTTGAGCCTCCAGGTTGTCCAGGTTTCCTGCAGTATTATTGTCTAATCTCTAGGTGAAAGATGCTCACTCTTAACACCATGGTCTTTTTTTGGTCCATTGTCACTTAAACattgtggtttcattttattgctgTGCACCAGGCCTTTCAGAGCAGTCTTGCCTACCATCAAGACATCCTCCTATGCTGCCCCTGCCCAAAATGGCAGAAGCAGGCAATCCCTTGCTGTGCTCCGAGCAGGAGCTGACCTGCTCAATCTGCCTGGACATTTTCACCGACCCCGTGTCTACGCCCTGTGGCCACAACTTCTGCCAGCTGTGCATCGGGGGCTACTGGTCGTCCAGCGAGGTCAGCACCTGTCCCTTATGCAAGCGAGTTTTCCAGGGTCGGCCAGAGCTCAGCATCAACCGTGTCTTCTCCATGATTGCCGAGAGCTACAAGGAGGCCAGTGTGGGGCCTGCCAGCAGCCTGGGGATGGGGGAGGTGGCTAAACCTGGGGAGATTGCTTGTGACGTGTGCATGGGCAGAAGGCTACGTGCTGTGCGCTCCTGCCTAACTTGCACTGCATCCTACTGCGAGACCCACCTCCAGCCCCATGCCCAGAACCCGAACTTTGCGCACCACCGGCTGCTGGATCCCCAGCAGGCCTTCAAGAGCCGAATGTGCAAGACCCACCACAAGCTCCTGGAGGTGTTCTGCCGCAACGAACAAGTCTGCGTGTGTTCCAGCTGTGCCCAGCTTGAGCACAGGAAGCACAGGACCGTTTCTGTGCAGGCTGAGCGAAACATCAAACAGAGACTGCTGGGCAAGATTGAGACTGAGATACAGAAGGGCATCCATCAGAGATCACACAAGCTGTCGGAGCTCCGAGGCACTGTGGATTCCTTCAGAAACTCCGCTCAGAGGGAGACTGCGGAAGTGGAGGATATTCTCCTAGGTGTGATCCGGTCAGCAGAGAGGATCAGGAGGGAGCTGGTCGAAGGGATCAGGCAGAAGCAGGCGGCCATGGAAGCACGGGGGGACGTCCTGATTGGCCAACTGGAGCAGGAGGTGGCAGAGCTGCAGAACCGGCACTTGTCCCTGGAGCAGCTCTCCAGCTCGGAGGACCACATCCACTTCTTGCAGagTTTCAAGTCCATAAGCTCCCCCCTTGCTACAGAAGACCTATCGGAGGTCAGTGTGGACATGCAACTGTCCCTGGAGGAGGTGAAGATGGCACTGAGAGACctgagagagaggctggacaACATCCAAATGGGCGAGGTCAGATCACCACCATCCATTCCAGTTTCTCTCCCTCGCACTGAGAGTATGATGAGCCTAAGGGGGCTGAGGAGGAGGGAGTGGTCTCTAAAAGATCTCCGGAAGCTGCGAACAGGATCCGGTGTAAAGAAGATCCGGACCTATTCAGGTGAGTCAATCTCAGACTCTAGTAATGGAAGAAGATGA

Function

GO:

id name namespace
GO:0043226 organelle cellular_component
GO:0043229 intracellular organelle cellular_component

KEGG:

id description
ko04110 Cell cycle
ko04114 Oocyte meiosis
ko04914 Progesterone-mediated oocyte maturation

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012211 True 1551 mRNA 0.55 7 13127168 13131962

Neighbor

gene id symbol gene type direction distance location
AMCG00012210 NA coding upstream 5162 13120013 ~ 13122006 (+)
AMCG00012209 NA coding upstream 46650 13080189 ~ 13080518 (+)
AMCG00012207 NA coding upstream 53154 13069204 ~ 13074014 (+)
AMCG00012206 NA coding upstream 61793 13033108 ~ 13065375 (+)
AMCG00012200 NA coding upstream 327717 12790527 ~ 12799451 (+)
AMCG00012213 NA coding downstream 12465 13144427 ~ 13148574 (+)
AMCG00012212 NA coding downstream 34638 13166600 ~ 13182830 (+)
AMCG00012218 NA coding downstream 55420 13187382 ~ 13202392 (+)
AMCG00012223 NA coding downstream 171094 13303056 ~ 13307523 (+)
AMCG00012224 mylpf,LOC108249004,LOC108443170 coding downstream 185953 13317915 ~ 13323389 (+)
G135073 NA non-coding upstream 141026 12985507 ~ 12986142 (+)
G135072 NA non-coding upstream 142074 12984445 ~ 12985094 (+)
G135053 NA non-coding upstream 225575 12889770 ~ 12901593 (+)
G135055 NA non-coding upstream 229412 12897030 ~ 12897756 (+)
G135051 NA non-coding upstream 231587 12873218 ~ 12895581 (+)
G135097 NA non-coding downstream 80712 13212674 ~ 13216360 (+)
G135110 NA non-coding downstream 129797 13261759 ~ 13262054 (+)
G135117 NA non-coding downstream 155704 13287666 ~ 13298200 (+)
G135131 NA non-coding downstream 240641 13372603 ~ 13397636 (+)
G135137 NA non-coding downstream 285443 13417405 ~ 13421051 (+)
G135070 NA other upstream 153115 12968377 ~ 12974053 (+)
G135038 NA other upstream 341108 12784088 ~ 12786060 (+)
G135037 NA other upstream 350011 12770783 ~ 12777157 (+)
AMCG00012191 NA other upstream 402974 12702323 ~ 12724194 (+)
G135025 NA other upstream 478356 12613973 ~ 12648812 (+)
AMCG00012217 NA other downstream 137234 13269196 ~ 13276971 (+)
G135058 NA other downstream 290473 13422435 ~ 13425359 (+)
AMCG00012228 NA other downstream 339139 13471101 ~ 13508799 (+)
G135240 NA other downstream 387459 13519421 ~ 13520494 (+)
G135264 NA other downstream 452308 13584270 ~ 13585916 (+)

Expression


Co-expression Network