AMCG00012934


Basic Information

Item Value
gene id AMCG00012934
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 14366098 ~ 14395069 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012934
CGGAAAAATGCGAAGCCACCGGGGCGGAGCCGAGATCCCCCTGTCACACTTTGAATATCACTTATATATCTGGAGGCAAAACTGAAGTACAGCAGCGGCGTggtagcagcagcagccgccgcCGAGAATGAGAGCAACCACGCAGCGTCCGTTCAGCACCTGGCGTTTTTGCAAGCCTGTTGCGTCCAATTAACACTGTGCGCCAATTCGCTGTCTTGGGAAACCCGAGTTGTCAAAGGCTGGATGTGTCGTTTTATTCAGTTATTAGGCTATTGTTGCACGCGTCTGATATTGCAGAATAAAAGCAGCTCCTTTTCTCCCGCTGCTAAAACTTGCCTCCACATGTCACTGTAAAAAAGTACAGTCAAAACTAAGTACTCATGTAAATGCATACAAGTCTCCTGGagttttcaatctttttttctgaaaaaccTTTCCTGGGCTCCGTATCTATCCAGGCTTCCCCCAGAGGACTGCCATGATGCGCTGGACTTTAATTCCCCTGGTTTCACTTTTTGGATTGTGCTCTTTCGCTTCAGGTTTGAGCGGCGTGGCACCCCGTTGCGACAGTCATGCTTGCAACCCCCGGATGGGGAACCTGGCCCTGGGCCGCACGGTGCTCACGCAGTCCGTGTGCGGACACAACGCCACCGAGCTCTTCTGCTCCTACTCCGAGGCCGCGGATGGCTCCTGCCGGCCGCCCAAGTGCGGCAAGTGCAACGCGGCGCAGCCCCAGCACGCACACCTGCCCGCCGCCCTGGCAGACTCGTCCTTCCGCTTCCCCAACACCTGGTGGCAGTCCGCCGAGGGGCTGCAGCACGAAACCCTGCAGCTGGACCTGGAGACGGAGTTTTACTTCACTCACCTGATCCTGGTGTTCCGCTCCCCCCGGCCGGCCGCCATGCTGCTGGAGAGGTCGCAGGACTTCGGACGGACGTGGAAGCCTTACAAGTACTTCGCCACCAACTGCACAGAGACCTTCGGCCTGAGGGACGACGCGGAGCTCGGAGGGTCCGAGTGCACCTCCAAATACTCGGGGGCCTTTCCCTGCACCCGGGGAGAGATGATATACCGGGCTCTGGCGCCAGGCCGAACACTAGACCCCTATGGAACGGAGGCAGTGGAGCAGCTGAAGGTGACCAACATCCGAGTGCAGCTATTAAAGCGCCAACCGTGCCCCTGCCAGGGCAAAGACCAGGCAGTCAAGCCCCAGCACCTGGCACACTACGCCCTCTATGACTTCATTGTCAAGGGCAGCTGCTTCTGCAACGGCCATGCTGAACAATGCATACCTGTGGATGGTTACCAGCCCACCAGGGAAAGGGCGCACCACGTGGTCCATGGCAAGTGCATCTGCAAACACAATACCGCAGGAGACCATTGCCAGCACTGTGCCCCACTCTACAATGACCAGCCCTGGCAGCCTGCGAATGGGAGAACTGGGGCCCCCCATGAATGCAAAAAGTGCAAGTGCAACGGGCATGCGGACAGCTGTCACTTTGACTGGGCTGTGTGGCTGGCCTCCGGGCAGCGCAGCGGGGGAGTGTGCGACCACTGCCAACACAACACTGAGGGGCCCAACTGCCAGCACTGTAGGAGTGGCTTCTACAGAGACCCCCGGCAGCCCCTCTCTGCACGGGACTCCTGCAAACcatgTGCCTGCCATCATGTTGGGTCGGTGTCCTTCCACCTCGGCGGGGGGTCCCCTTGTGACCCCAAAAATGGGCACTGTGTCTGCAAGCCAGGAGTGGGTGGCTCGCACTGCGACGGGTGCATGGTGGGATATTGGGGTTTTGGAGAGTACGGCTGCCGGCCATGTGACTGTGCTGGCAACTGTGACCCCTTCACTGGTGACTGTCTGACTGGTTCGGATATGGAGGCGTTTCCCAGAAGTGACTTCCTGTCTCCCTCCAACGAGAGTGATCCCACCTGGAGCTGGAGGGGTGATGAGCTGTTCTCTGCTCTGCACTACTCAGaaaaatgtgaatgtaaagAGCAAGACCTGGGAAATCCGAAACTCTTCTGTACACTGAAATATGCCTATGTCTTGAAAGTTAAAATCCTGTCAGCGCATGATAAGGGCTCGCACGCCGAGGTCAGTGTGAAGGTGAAGAAGGTTTTACATCAACACAGCAAAGTGAAGATCCTGCGGAGGAAGACCACGCTGTACCCGGAGTCTTGGACAGCACGGGGCTGCACCTGCCCCATCCTCAATCCCGGGATGGAGTACCTAGTGGCAGGCCACGAGGACCGGAAACTGGGCCGGCTGGTGGTCAACATGAAGAGCTTTGTCAAGCTCTGGAAGCCCAACCTGGGGAGGAAGGTCATGCAGTTCCTGAAGAATGACTGCAAGGGGTAGAGTCAGGGGAAGCCCAGGAAGACAAGACTGCGGCTTTGTTTCTGTGCACTGAGAGGGGGAAGCGAAGGGGGAGAGCACCCGCCGAGCAAACTGGAgcgaaaaataataaaaatagtaatttcaAGAAGTGTCAGAAAAGGCACCGAGCTATATAGTAGGAGTTGCGCTTGAATTGAAACCAAAGTTTGCCAGATTTCCCTGTGTACCCAGCTACATCCTCTGAAGCACTTTACTAGCTGTTGGGCCGAGGCGTTCAGACATTGGATCGGGGGAGGTACCTTCAAAATCGACCATTCCCAAGCAGACCTGACCGGCTCTGTGGGGGAAAGGCGAAGATGGAGTTTGTAGTGGAGCGCTGGCCTTCGCATGCACCCTGTCGGTGAGCACTGGGTCAGTTGAGCAGTGGGAAGGGCGCGTCGCACTGGACTTTGAATCCTTCAGGTTCTTCTTTTGTTTGACTTGGCTAATGTGAAAGCCAGATCCACTGgggtttgttttacttttgtttcatTCAGAGCTGTTACAGTGGAGACACGGACGTCCTTCTGACACACTGTTTAGTCTGAAGCTGAACAGTCCGGTTGCACAGGTCTGAGGATGTGCACGTGGCACACATGGTCAGAGATGGTGAAGTTGTGAATCGAGACTGCCTTGTGTTCAGGTTACAGAGCCATAATGAGCTTTCTTCATCtgtatgcaatacattttaaaactgccaTGTTttctatataattatatattaaaaaagcaatttagTATTCAAAATCTCATAGTTGTATGCTCTCACTTAGGAGTCCTGTGGACTTTGTGCTGTTGTGTTCTGCTTTATGTGGTCATGTCCAGTAGTGGCTCTCAGCCTTGGCCCCGGGGCTCTACTGGCCTGCTGATTTTTGCTCAATCCAAGCTCTCTCACTTCACTGAACCATTAACCAAACCTACTATTtaccttaattattttaaactgttggAAATTTCAATTGTCTATAACATGATATCTCCAAACTGGAATTCCCTAAACGTAACTATTTACAAAGTCAAATTTAAgcaaattaagattttaattaagTAGTTATGAGCTCAGTTTGACCAAAGATCAGAGACTTTCCCCAGGACTAGGGCTGAGACCCGCTGATGAAGAGTATATAATAAACAGAGACACAagactgatttaattaaatatgcaggGTTATACAGACATGGTTGTCCATATTGAGTATAACAATCAATTTCTCTGgaattccattttgttttttctacttttaaaatgtatatataaattgagCTTGTATTTGTTCATTGTGTAATGCTTTAATATTGAAACCTGTGGAGGGGTTTTACACACCGTGTATCACTCTCGGACTGCTCCACGGCACGGCTCCACGTTGAAAAGGATTTTTTGGAGTTGCTCTGAGCGTAAAGATAAGCGGGCTTTTAAAGTCATTTGTTAGTGTGCAATGTCTTTCCAGCACATTGGATTCCACCTCTATTAGCGGTCAGCGGCGAGGCTTggcatgttaaaataatgatcgaatgaaaacaaaccactgTTTCGTAATGACGTGTTGTTCTTTGTTGTCACTGTGCATCAGATTCATTTAAGAAACATATTCAACACTTAAGCCAAGGAAAGAAGTCCCGTTTCATAACCAGAAAGAGCACGCACACAGAAAGGCGTTTTAAGTAACGTGATCTGTTGGTGACTCAAAGTGGTGACCAACACAAGGTTCTGATTTCCCACCGCTTGATCTTCAGCTGACTGTTTCCATTCATCCAACAAATTCATACATAAACCAAATTCATTCATAACGAAGGCGGAGAGAATGAATGAAATCCAGTGCAATACAGCAGCTTTTGGTCGATcttttaatacagtgaaaatagttttttttttttttcctttttaaatcaaatctggAATTGTGTAGCAtgactgaatataaaatatgtggCTCTTAAGTGTGTTGGGGGAGCTATTGGCAGTAATCCAGGACCTGAATAAGAAAAAGCATCTGTAAAGCCACTTTGAAGGTTTCAAATAAAGCTGATGGGCCTTTTACATCTCTTTTGATAAGTATTAGatttcactgtattatataGAAAACTGTTAATAAAGCGCGAGACAACTCAAGCACACCATGTATGACATCTGATTTACTGTGAAACCGTAGCCAATTGAATGCTGTCATGTTGTATCGGATGCAGGTCATAGATGTCACACCAGGCCTGAGTAACCATACATCACTGTAATGTATTTCTGCCCGATTAGTGTCTCCACATCTGTGCTGTTAATAAATTGGGtgaggtttaatttaatttgcatagaTGCCCTGGATTGGCTGAAGGAAGACTGTTGAACATTTGCTCACTCTCAAGCCTTGtcctttttgtttctccttttgaCGGACGACTGCTGTTATTCCCACGGCTCTCATTCGGTTTATAAAtgagttgttttgtttgagttttaAATCCACCGACGACATCAATTTATATCTGTAAAAAGCACATTCAAGTTATTGTCTGACTCTTGTGTAGAACTTTTTAAGATTGCAGATGTTAGAGATTGTATGTAATGTTGACAGGGATTAATCTAATGTTTGTAATAGGAAGACTATTAAACTTAAAAAGACAGAGAGCTGGGATTACCATCTGTGGCCTGTTTAATTCcaactgttttttaaaataaggcTTCAAAACTG

Function

GO: NA

KEGG:

id description
K06845 NTN4; netrin 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012934 True 5058 mRNA 0.48 11 14366098 14395069

Neighbor

gene id symbol gene type direction distance location
AMCG00012928 NA coding upstream 25196 14332782 ~ 14340902 (+)
AMCG00012930 hal,LOC103041200,LOC107670217,LOC107740873,LOC108275357,LOC102785645 coding upstream 41225 14315841 ~ 14324873 (+)
AMCG00012929 lta4h coding upstream 52869 14299408 ~ 14313229 (+)
AMCG00012926 cdk17,LOC107658862,LOC107656329 coding upstream 106935 14228638 ~ 14259163 (+)
AMCG00012922 NA coding upstream 190475 14163667 ~ 14175623 (+)
AMCG00012935 NA coding downstream 10489 14405558 ~ 14419258 (+)
AMCG00012936 NA coding downstream 38734 14433803 ~ 14451103 (+)
AMCG00012939 LOC103459300,LOC104941780 coding downstream 84007 14479076 ~ 14510489 (+)
AMCG00012942 NA coding downstream 179524 14574593 ~ 14580228 (+)
AMCG00012941 NA coding downstream 257775 14652844 ~ 14681647 (+)
G40963 NA non-coding upstream 21617 14340946 ~ 14344481 (+)
G40920 NA non-coding upstream 179962 14185240 ~ 14186136 (+)
G40846 NA non-coding upstream 378010 13986950 ~ 13988088 (+)
G40824 NA non-coding upstream 480909 13883261 ~ 13885189 (+)
G40788 LOC107575789 non-coding upstream 1104919 13260644 ~ 13261179 (+)
G40986 NA non-coding downstream 507 14395576 ~ 14395899 (+)
G40989 NA non-coding downstream 2528 14397597 ~ 14397855 (+)
G41054 NA non-coding downstream 230183 14625252 ~ 14625850 (+)
G41058 NA non-coding downstream 233514 14628583 ~ 14630610 (+)
G41075 NA non-coding downstream 279996 14675065 ~ 14677245 (+)
G40629 NA other upstream 1830169 12488575 ~ 12535929 (+)
AMCG00012894 gdi2,LOC107585127,LOC107560733,LOC107754057,LOC107694307,LOC107757239 other upstream 1865696 12453239 ~ 12500402 (+)
AMCG00012848 NA other upstream 3824138 10540728 ~ 10541960 (+)
G40224 NA other upstream 3921651 10436907 ~ 10444447 (+)
AMCG00012820 nt5dc3,LOC102307862,LOC107753643 other upstream 5235887 9112460 ~ 9130211 (+)
G40999 metap2,LOC108428789,LOC100194705 other downstream 33244 14428313 ~ 14433201 (+)
AMCG00012940 LOC107748465 other downstream 121714 14516783 ~ 14529806 (+)
G41059 NA other downstream 237288 14632357 ~ 14633413 (+)
AMCG00012954 NA other downstream 686350 15081419 ~ 15136729 (+)
AMCG00012961 NA other downstream 902893 15297962 ~ 15317344 (+)

Expression


Co-expression Network