AMCG00013547 (trappc6a,LOC106580727)


Basic Information

Item Value
gene id AMCG00013547
gene name trappc6a,LOC106580727
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 35286346 ~ 35306459 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013547
TGCACATTCTCTATTCCATTTATGATTTTAACACGAAAATGGTTGGACAGCATGCACAAGACCTGCGGTTTCTATTATTCACTCTTGTGACCTGCTCCATGGCAGATAAAAGATGTTATGATGGAGTGGTGGGACCTATGGAGGAGTTCACTGTCGGCGCTTTGCAACCACTGAGTGCTTGAAGACAGATCTCATTGGGATTTGTCTACCTAGGTGTTGAagcccccccccttcccccttctCCCTTCCCTCTTCCCTTAGCCAGAGGGGCACGGTAgcggaggaggaagaggaagagggaggagacCATGGACCTGGGTGAGAAGAGGCCCAACAAGTGGTGGACGGAGACGGACACCTTCGCCATGCTGGCCCTGATCGAGGAGCTGGACCTGGTGCGCGAGCTGGACAAGAAACGCCAGCGCAACGACTCGCACTTCCGCCGCCTGCGCCACAGCCTGGCCAAGCGCAACATCCACTTCACCGTCAACCAGATCCGCAACCGATGGAAGAGCCTCAAGCACAAGTACCGCAAGATCAAGACGGCCGGCTACCGCAGCCCCGCCGCCAAGCTCTCCGCCATCGAGTCCTTCCGCTACTTCAAGAAGCTTGACCGCATGTTGGCTAGAAGACCCAAAGCTCCCGGGCAGCCTGACACAGCTGGAGGAGGGATGATGGGGGGGAGCTGCGTTGATGGCAACCTGGTGGTGCTCTCTGCATCTGAGCTGGAGGATCACACTGACAGCGATGTTCCTCAGTCCTGCTCGGCTTCTCACTGGGAGAGCATGGCTGGGCCTGACGGCGACAGTGAGGACAGCAAGGGGCTTCGCGATGAGACTGCTGACTACAGGACAGCCCACTGGGACACTGAAGAGGAGGTGGTGACATTGGGGCTGTCGGGGGAATACCTGTACCCAGTCAGGACTGAACCTCACTTGCTGTCCTCCTTTCATGCTCTAGATGGCGCTAGAGATCCCAGCAGCAGTAGCCCAGGAGCCTCGccagGGCCCTGCGAGGACACCAGCAGCCTGATCCTGCAGCAGCTCACCATCCTCAACCACCGGCTGGGGGAGCAGCTGGCGGAGCAGAGGGCCTTCCACTGCAGCATGCTGGGCCTCATGGACCGGCAGATCGAGGTCCTACAGCAGCTCTCCAACTCCACCCGGCCTCCCGCCAAGGAGGCCGAGAAAGACAGGGACCCCACCACCAGCCAGCAGGTCCATGATGCCCTGGTGCACATCCTGAGGGGCGTGGAGCAGGCCAGGGCGCAGGGACTGGCCCCCTGCCCCTCCAAACCCACCCCGGAGTCCCCCCTGCCTTCCTGGACTGTCTCGCTCCTGGAGGTGCACCAGGGGTCGCCCCCCGCCAGCGAGACGCCCAACCCCAGCGCCCCTGACCCCGCACCCCAACCCCAGCGGGAAGGCCGTCCGGATCCCCCCGGTGCCCCCCTCCCAGAGCAGCCGCCTACTTCCCCCCGGAAAGGCGTGTTGCTCAAAGGGCTCTCCATCAGCTGCCAGCACAAATGAGCCGACTGACTTTCCCTTCTGCTCCCCAAAGCCAGCCAACCAGCCACACTTTAGACAAGCAAAAGAGGAGGATTTGGATTTACAATAAAAGATAACTTAGCTTGTATGGGATGGGGACGGGGGTGTGGGTTTGAGTTCTTTGTAGGGCATTTTCAATTTCGATCAGTGAAGTACTGAGGTTTCATCCCAAACTGTTTCCAACATCATTCTTCCACTCTGGCTGCTGCCAAACCTGGTTGGAGAGCACTGTGGGAACTTTGACCTTTCCCCTGCACCACCAGCACAATCCAGGTATGCTTTATCCACCTATCCCATGTCGATATGATCTTTTACTCTTCGGTTGCTCTCTTGAGGGGCTATGGAAGctgagggaggggtggggtTATGGTTCTTAACATTTCAACCGGGACAGCCAAAGGAAGGACGCACTTACCTTGCCTCAGAACTCTTCCAATTCAGATGCGCGATAGCTGAGGAGGAAACCAGTAGTCCCTTATTAGGTTCACTTGGCAAAggtgaggtaaaaaaaaaaaaaaacctgagtCTTCACCAACTGCCACCATAGAAAGAGACTAAGAAAAAGACTAATTTTCCCGAGACACATTTCAAGGTAGATTGTTTTAATGCTCTTCTTTTAGGGATGAAAAGGTTTGGGGTTTTGAAACTGTCAATAACTAGCTAATTAGTCAATAACTGATTCTAACAGTGGGGATTGTTCTACACTATGTTATTTTAAGGTTCAGTACCACCCAGCCAAGTACTGTTTATGCAGTGCTTTCCTTTCTATAACAGCTGTTTTGGGAAAAGGAGTCAAACCCTGTGAGAAGACGGCACTCAGCATCCTTGTGGTAAAGCAACAATAGTGTCACAATTCTAAAAATCAAGTAAATTAAGTCAGTCGACAATTGTGTTGTCAGCCCATTTGGGTCCTGCGTGACCTGTTCCTTGCTAACTTTGAAATGTTAACATAAGTTATGTGTTAGACACTTGCAGAAAGGCATGTGGCCTAGTCTTGGGTttcagacactgagagacagtgTTTTTTGAAATCCTCATGGGAATGTCATCCTTGTACTGTTCATGCAGTTGTTTTTGTGGCATTTTTAGCTACTTCACTAGATGAGACCATATCCTGGAAAATATGGGGCAGCAGATAATAGAATATGAATTTGAGTGGTGACATTAAGTGTCACACCTACCcgttttaattattgaaaatataagTAGTTTCAAGTATCCCTAGTTctatttatttggaattttaaattaatcattagcTGCTTTGTAAATAAGCTATTTTGAGGACTAGGAGACTTCTCTACTACAGTATTGAATGTAGACAGTCTTAAGAAGGATTTTACACTACTTgtagtttgtatattttttgcagACATAAAATTaagcttgtttgtttgctttttaaaatcaaacaaaacaaaactaaaacaaaatgttgtgtttgCCTCCCTTTACAGTCAAGTGGTTTGTTGCTAGGTGTATTATGGTATCTCTTTCATGAAACCTGATTTCAACAGAATGAATTAAGAGTTCTCTTCCCCCCCCAACCTGAAAAGTAAACTTCATTATAGGATACAGGAGAGCATTACTGGATATAGGATTCTGTCAGCAGAATTACCTGGTTAAGCTGTAATAGCAACGTCACCATGTTGTTGTGAGGCTCCAGCTACGTTGCTACTACAACGCAACAACATAGAGAACTTTATGATGCAATAGTAATGAGTTCTGGCTAGTGTTGCTAGTCCTGTCCTctctgtttttcatggtttcaAAGCGGTCTGACAGTCCTAAAACAAACTCAGTAGGTGTTTGTTTCTGAGTTGACTGTCTTACCCTCTAAAAGACTGAAGATAAGCAGGCATACACAGACAACAATGTGCTCCATGGAGGTTTTCTATGGTAACAGGGATTCACCCAACAGCCTTTGATGCATGTTTGCTCATTTACAATGCTCTTATCTGTCTAGTTtcttgtctttctctttttactCACAATGTACTATTAGtaggaaatgaaaaggaaatgctgtatttatttatttattttgccttaatTTTCTTTCGTGATGGGGAAAGTCATGTTgtccaagtaaaaaaaaaaaaaaaaaaaagattgtaagCGTGCACCCATTATGCAAACCCAACgctacaaaaaacagaacagaatcacTTTCGGAAGTGTCCAGAGGAGCATGCGTACTTGCGGACGCCACTTGCAAGGTTAGCAGGGCATCAAGATTATATTCATCCCAAAGATTATTTCCAAGCCAAGCATTTAAATGTTCTTCTTATTAAACCATTTAGTCTATAGTTTAGGGAACGTGAAGGACAAATGTGTTTGCAATATCAAAGCTGTAAAAACACcggaaaaacacagacaatgTCATGGCAGACGACGCTCTCTTTGAGTTTCTTCATATGGAGATGGTGGATCATGTCTACAACGTTCACACCTCGaaggaggagagggagcaggAAAGGGGAAGTTGCATCTCCATATTGGAGGGCATGGGTTTCCGAGTAGGACAAGGACTTATTGAAAGGTTTACCAGAGACACCCCTTCTTTCAAGGACGATTTAGACATCATGAAGTTTCTCTGTAAAGACTTTTGGATAAACGTCTTCCGAAAACAGATTGACAACCTGCGGACTAACCATCAGGGGACATATGTCCTACAAGATAACCGGTTCCGCCTTCTGACTCAGTTCTCCAACAGCAAGCAGTATTTGGAGGAAGCTCCGAAATACCTGGCCTACAGCTGTGGCATGGTGAGGGGAGCCCTGTCCAACTTGGGCATGGACAGCGTGGTCACTGCAGACGTTTCCACATTGCCAGCTTGTAAATTTCAGGTTGTGATTCAAAAGACTTAAAGGGGAGTTTTCATAATGTGATAATAGCGCTTCTCTAACTGGGGGGGAGCACGTGGAAATCcttcactgcaaaaaaaaaaagaagcaaaagcCGAGCAAGGATGTCTGAATGGGCTTTTTAGAAACCAAGGACTTTCGTAGCGGAGAGGGACATGCAGGCAattaaggtgtgtgtgtgtctgagagtgagtgtgtgtgagacagacacagagtcaATGCCATACTTTTTATAACCACACACGCTGAATCACGGGCGGGAAGTCAAGCTGACCACATCTCTGCTCGcccacttctgtttttgttgttgttgttaatgttgtttgtttgtttttacatgtacAACTGTGATATGACAATTGAATAccactatttatttacttttcagaCTGTGATATGGCACCCTAGGGGATTGTAGCTTTGAAGTGGGAATCCTTTTTCTTCTATAGGATATTTAATCAATCTTAACAAGGTGTTTTAGTGTTCCAACAGCTTCTGCCAGGTTTTTATGTTAAGgttattgtataatttaatgtaatgtttctttttttaaatctaaatatctCTTCACCATATGTCGCTGTATTTCCATCGAGGTGGCGGTAACCTTGTCTTTGGCTTGGTCGTGGGAATTTGAAGTGCTTTATGTGTGTCGTCTGTACAGTGCAGCAGTAATGAAGTAGTTTGAGAGTCAGTCTACCATATGGCGAATCTGCTGACGTGGTTTGATAGTGTAGTTTTTGATGACACTAGCAGAAATGAAACCTGTCTGCACTGGACGTGCATAGTAAAGCTGAGGGCAGAAAGCCTATGTTTCTATTACATCCACAAAACACCATATCAGAGTTAATCCGCACATTAGGGAAATTGATTCAGTGTTTCCAGGCAAGACCCATACAAAGTCAAATATGAAGAATCCGTGTACTGTAAAGCAAAGGAGAAGGATGCATTTGAGTTTATGGATTATAATGATTTGTTTCCCACTACTGCGATATCAAACAGTTAAAACCTCAACACGATTCCCCTTTTGTCTCGGTGGTGTTGCTTACTGAAATGATAGGCTTATTGAATGGTAACACAACTTTGTCCCTCTCTGCTACTAGTCCCTCACTGCTTGCATTTTGTGGTAAAAGTCATTGcactaattttaaaaataaagaaatgctgtTTTGTGTCCATTGTACAGGCTGGAGATTTCTGATCAATAGGAATTTCATTGCTGAGTTTCAAATTCTTATCTTGTCCCAACTAGAAATCAGGGATGCCCCACATTTGGGATTCAATTAAACTGTATGTTCAAGTCAATGTAAGGCGTTTTTTCCCCAGCTTGTTTTGTGTAGTATATTTTATTGACCACTAGGTGGCATGGCTGTGTAAGAGACCAGGAAACTTATGTCCAAAGCTGCTGTCTTTTCTGAACACTGGTGGTGAGTTTTATTAAAAGGTATGCTTGACAGCCTCATTAAACAATAGTGTGCATGTTTTGTGATATCTGTGAGCACTCACCCCTACTGAAAGCTAGACTGAGTCCCACAATGGAAACTGACCCATTTCTGTTAATACATCTATTGGCCACATCTACAGTTTATACAGGAGCATGCAAATGTGTTAGAACATAGTTTTCATTTGTTGGGCGTGTAAAATACAACCACCGTAAAGGAAGAAACATAGAATCTTTTTTCATAGTAGGGAAATTGTGTAATGTCTTTTATGACTTCACTGCATTGATATGCCACATATGAAATCAATTGAGAACCGTCTGCCATGTGACATTTGAAAAACCTGAACACAACATAagtttgtctttctgtctcaTGAAACGGACATAATTGAGGgctaattttgtgcagtgcatcTAATGAAATCACAAACAAGTTAGCTAAACCATACTGTTGTCTGATACTCCTTCGTACAGGAGTAACTCTGTCGGCTAGTCATTCACTGGGTCCTGTGTTTCTGATCTGAGCACTGGTCTGCCAGCTCGTGACAGGGGGGCAACTTTTTTCCAACAACACATAGATAATCGGTTTAGTCCCAGTCAATGTTGTTCTATTTGCTCAATGTCGAATCATCAATGGTTTccttttataattaataatgttttcgTGGAGAATAGGGAGAGATGTAAAGTAGGGATAAGGACGACAAATATCTGATCATCTTATCCTGATTTTCACACAGGAATTAATTACACTCTAAAGCAGGGGCgtccaagtttttttttcccgaTAATGGGCCACATGATCGGTAATCGGGGCATGTGCAAGGCGCTTTTTTATTGATAGCAGTGGTGATGTGTAGTCTGCTAGCATGACACCCAGCAGCAGTCAGTTACACAATGGTACTGTACTAGTTCATGTGTGTTAGCTAATTAGGTTAACAAAAATAACTGCTAAACAAGCTCAGGCATTTGGCGCTCAGGATGCATGTTGGATGCCCCTGCTCTAAAGAAAAGACTGCTGGTCAACAGTTAGTGGCCTGTGCACCTCATGATCGCTTGTTTTTTGCAGTGCCTGTGTCTTGGTCTTTGAGTTGCTGATCTTTGTGATGACTTTGTACATCTGCACCTGAAACCAGGCACTGAGGCCAAGCAACTGTTTTGATCACACCTTCTGCAGACATCCTGAAAGCTGTGATCAAAACAGTTGCTTGATAATTACATCTTAATTGCACATTATGAGCTCTGAGATAATGATACATAAGTTGCATCATCAAGAACAAATTTAAGCGGTCTACCTAACTGCAACGGTATAAAcctaatacacacaaaaaaaaagcaaaaactacagaaaaaaaagatagaaTATGGTTCACCGCAGAATGTACAGGAAACCATGCAAAGCTGGCACCCTAGAGCTGCAGTATTACTCATAATCGTAGAAGCTGTGTCTTAAataatgtttgatttaaaacttGATATTTAGTTTCCAGAAAATCAATTATGTTTCCCGGTAGATGCTTGCATCACAACAGTGATCCTTTGAGAGCTGAAACTGTGCATAGTGCTGAGGGGAAATGTTTGGCAAATGTATCGTGTATAGCAGTGTCACTTTTGCTTTTTGTCATTTCTACAGTCTGCAATTTTAAAAGATGAATGAGACCATGGCCTATTATGGGAAAATGACATTTGCCAAATACCTTTTCATTATTTCGGTACTGTTGTATTTCTCATTAACCACATCATTTCTCTGCAGGTTTGTTTTCCTTGATTGTATGCGGTGGCTTCAGAGggcaatgcaaattattttgtttatactgTCTTGTTCGTTTCTTGTTGTTGTACGTAGTCTATAGGCTACATGCTCTGAAAATATAGagggttttatatttttcaaaataaacatttatgtgAGGGAAATATAA

Function

symbol description
trappc6a Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport and melanosome assembly. Predicted to act upstream of or within pigmentation. Predicted to be located in cytosol. Predicted to be part of TRAPP complex. Predicted to be active in cis-Golgi network and trans-Golgi network.

NR:

description
PREDICTED: trafficking protein particle complex subunit 6B-like

GO: NA

KEGG:

id description
K20304 TRAPPC6, TRS33; trafficking protein particle complex subunit 6

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013547 True 7774 mRNA 0.44 11 35286346 35306459

Neighbor

gene id symbol gene type direction distance location
AMCG00013544 NA coding downstream 25033 35256529 ~ 35261313 (-)
AMCG00013541 paf1 coding downstream 149852 35129171 ~ 35136494 (-)
AMCG00013542 samd4b coding downstream 180512 35081511 ~ 35105834 (-)
AMCG00013537 LOC108246317 coding downstream 218415 35066249 ~ 35067931 (-)
AMCG00013536 NA coding downstream 228911 35055617 ~ 35057435 (-)
AMCG00013548 NA coding upstream 8205 35314664 ~ 35318941 (-)
AMCG00013550 NA coding upstream 518546 35825005 ~ 35826534 (-)
AMCG00013551 NA coding upstream 580837 35887296 ~ 35887799 (-)
AMCG00013557 NA coding upstream 652338 35958797 ~ 35959490 (-)
AMCG00013554 NA coding upstream 661088 35967547 ~ 35990485 (-)
G45187 NA non-coding downstream 6525 35279557 ~ 35279821 (-)
G45145 NA non-coding downstream 71781 35214251 ~ 35214565 (-)
G45136 NA non-coding downstream 160769 35123355 ~ 35125577 (-)
G45123 NA non-coding downstream 168422 35105887 ~ 35117924 (-)
G45121 NA non-coding downstream 204007 35070738 ~ 35082339 (-)
G45201 NA non-coding upstream 43506 35349965 ~ 35350164 (-)
G45210 LOC107575789 non-coding upstream 348826 35655285 ~ 35659856 (-)
G45248 NA non-coding upstream 528692 35835151 ~ 35932634 (-)
G45251 NA non-coding upstream 539091 35845550 ~ 35902337 (-)
G45259 NA non-coding upstream 631997 35938456 ~ 35939620 (-)
AMCG00013531 NA other downstream 1586634 33692844 ~ 33699712 (-)
G45037 NA other downstream 1607439 33678224 ~ 33678907 (-)
AMCG00013518 NA other downstream 1784599 33468849 ~ 33501747 (-)
AMCG00013488 NA other downstream 2658442 32622153 ~ 32627904 (-)
G44719 NA other downstream 2718394 32565760 ~ 32567952 (-)
AMCG00013578 NA other upstream 1572734 36879193 ~ 36885493 (-)
G45468 NA other upstream 1652718 36959177 ~ 36959914 (-)
G45571 NA other upstream 1824399 37130858 ~ 37223824 (-)
G45614 supt5h other upstream 2176457 37482916 ~ 37483608 (-)
G45617 LOC100846954 other upstream 2182270 37488729 ~ 37538310 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_009065 si:ch211-116o3.5 coding NC_007126.7 CM002899.2 14085187 ~ 14098522 (-)