AMCG00013900


Basic Information

Item Value
gene id AMCG00013900
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 46199714 ~ 46207783 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013900
caacaggcTACATATCAGCAATGTATGTGCTTATAATCATACTCCTTTGCTGTTGTAATTGTGCCTTTACACTGGTACCCCAAATATTGTTATTCAGTTTAATCactcagtgtgtttttaatcctTATTGCACTAAAGTAATTTTTGTCCCCAAGCAGAATGGGGTACTCTAGTTCCTTAAccagtacagcacagaaagaaagaaaaaacattaagaacacAACAAAGATACATACAAGGAAGAAGGTGAAGGATGGAGAGTCTGGGACTACAGGCCGTGACGCTGAGCGATGGCACGACCGCGTACATCCAACAGGCCTTAAAAGATGGAAAGCTTCTTGAAGTTGACACCATCCAGTTAGAGGATGGCACCACAGCCTACATTCAGCAGGTCACCGTGCAGCAGAAAGACCCCATGCCTTTCGAAGATGGCCAGGCCGTGCAGCTGGAAGACGGCAGTACTGCCTACATTCACCACACCCCGAAAGACGGCTATGACCCCAGCGCGGTGGAGGCGGTGCAGCTGGAGGACGGCAGCACGGCCTACATCCATCACCCCGTGGGCCTGCAGGCGGGCGGCACCATCCTGGCTGTGCAAACGGAGGACGGGCTGCAGGAGCTGACGGGCGAGGAGGCCGTGGACCACGATACCATCGCCACACTGGAGCAGTACGCCAGCAAGGTCAGGGGCCAGGGGCCAGGGGCCAACAAGATGTCCGAGTCCGAGGTGGAGGAGAGTGTAAGCAGCACCAATGGCCTTCAGCAGATGGACTCCGGCGAGGAACACACCACCGTGCAGGTGCTGTTCGAGGGGGAGACGCGCAGCGCCGGGAAGGTCCAGCCGAGCGGGGAGAAGTGTTTCCGCTGCGACTACGAGGGCTGCGGCAGGCTCTACACCACGGCCCACCATCTCAAGAGGCCCTTCAAGTGTCCATTCGAGGGATGCGGCCGCTCCTTCACCACCTCCAACATCCGCAAGGTCCACATCCGCACCCACACGGGCGAGCGGCCCTATATGTGCGCCGAGCCCGGCTGCGGCCGCGGCTTCGCCAGCGCTACCAACTACAAGAACCACATGCGGATCCACACCGGCGAGAAGCCCTATGTGTGCACCGTGCCGGGCTGCGGCAAGCGCTTCACCGAATACTCCAGCCTGTACAAGCACCACGTGGTCCACACTCACTGCAAGCCCTACACCTGCAACCACTGCGGCAAGACGTACCGGCAGACCTCCACGCTGGCCATGCACAAACGCACCACGCACGGGGACTTCGAGGCCACCGAGGAGAGTGAGCAGGCGCTGTATGAGCAGCAGGCCACGGCCGcagAGGTCGAGGACGGCGTGGAGACGCAGGCAAAGAGACGGCGGATCTCCTTCCTGCCGGGCGAGGAGGGAGAGGCGGAGATGGAGGCTGACGGGGGTGGCGACATGGCCTCACAGGTGACCATGGTGGCGCAGGATGTCATTGgctcccaggtggccctcatCACCCCTGATGGCACTCAGCAGGTCAGCCTCTCCCACGAGGAGCTGCAGGCTCTGGGCACGGCCATCACAATGGTGACGCAGGACGGCACCACCATCACGGTCCCCGCCCACGAGGGCGACCTCGCCGGCCCGGGCCCTCATACGGTGGCCATCGTGACCTCAGACGGCATGCTGACTGGTGCCACTCAGATGTCCGGCCCACACTACCAGCAGGTGGCGCTGCTGGCCACAGCGAACGGCACTCAGATCGCAGTGCAGCTGGAGGAGCAGCAGACACTGGAGGAGGCCATCAGCATGGCCACAGCCGCCATCCAGCAGGGCAGCCTGGCTCAGGACGACATGGCCGCACGGGGGGGCTGCTGACCAATGCTCACCGGACCGGACTGACCACGGCCCGGCCAGAGCAGGACGGCTGCGGACTCCAAATGGCCAGACAGAGATGGATCCTCACCTGTCTGACCTCAGTGGCAGCCCCCCACCCGCCTGATAGTCTCTCACCAGCTCGGACAGAGAGAAAAtggaaaccaaaccaaaccgaCCGTATCGAACCGGCGACGGAAACCAACTTTTTTTGGTGGCGTTTTCTGTGTGAGACTGGTGTGAAGGTCTAGCACTTACAACATCACAGCGCCCGTCAGTCTGTCTTGCTTCTGAGTAAGACAGAAACAGGAGTCCGGTATGTTGGCTACTTTACTTAGAAATCTCATGGGGCCGACCCGTTCATAACCGGGCCCGTCAGAGATCAGGTACAGCACTGAAAACTAAAATGACTCCCTGTCCCTGAGAGTAACTGACCACTGCAAGAGAAGAGGAGCCGGTCTGACTTTCCGAATCACGTTGTCCTTGATCTCCCCACCCCTTCTCCGGCGCCGCACTTCTGGAGCACTGACCTAGACCCTTCAAGTTAGATCGGGAGGATTGCTCTGAAAACCCGCCTTCACTCTCTCCGGGAGCCACAGGGCTCTGTGATCCTCAGACACCAGCAGTCGGAGGAGACCGGTCAGACTGGAGCTAGTAGAAAATATTTGTGAAACTAGGTGGGAGGGAGAACTTGGGGCGTGCAAGAGTTCACTAGGTTCTCATTGTGCGGACCgtgtcatgtgtttgtttgtattcgATCAGGAATATCAGTTCCTCTTCTGGGTTCCTGTGATTTCAAGGCGGCCGATTGGGGCCAGGTGCCCCGAGCTGAAATCAAGGCACAGCCAAGACTGCCCTGTTGACTCCCTGTTGGAGTGAATTAGTATGACGAGCATGTCTCGTATGATGTCCAAAAGTGACCGGGAAGCACTGGTTTTACTGGCTGGCCAATAATTGCTGGCAGTGTGAAAATTTACCTCGCCTTGTAAGTGTGGAGTAGGTGTGGTTCTGTACGGGAGGACTGGATGCCACCTTTATTATTTTAGctctaaaatatgtttgttttattatttttatttgtgtgtgtgtgatttttcaaGTCCTAAATGACGTACGAATGAAAAGTCGGAGATCCTTCCACACCGGCAGGACAGACTGGCCCTTTTGAACTCCTTATTCCATCATCCTTGTGTGTCTTCCGGAGAGGGGTGAGAAGCCGGCGATGTGgtggaattaaattaacaaacaagtGGCTTCAGTTTCTGTCACTGTCCCTTTATTGTCCCCAGACGACTGTTTAACCTAGtcacctttctttttctttttcaaatatgaTTATGACCAAACCAGGTGGTCCGTGTATACGATTttattgtctttcattttcCCACACTGGTTAAAAATCTCAGTGGACGCGTTTTCACCTCGACCACAATTGGCACTTGTGTATCGCCAGCCCAGAAACCACCAAGTGCGAATAATGGACTCACTGTTCTTGTGTAGCACTGTTGTATCGAGAGGGCACAGCTCCCAGCATGAAAAAGACACCTGCGTGGCACTTCCGTTGCATATCAGCTCAAGTTTTTCTGGCCAGGCCCGTTCTGAACCTACAAGAAAGGCACTGGTTTCTGCTCCACAATGAAGTCCACTGAACTGGAATTGAAAGAAAGCCGAggccacaaaataaataaccacgGTACCAACATACGAAACTCCACCACCTCCGTGGAGTAGCATCCTTGCTGGGGCAGAGGCTTGTTATACTGTCCCGTTTCTGTGTGTCTGAACTGTAcgtcttgtttgtgtgtttttcttctccgttcttttccattaataaaataaaatttggtATAAAACA

Function

GO: NA

KEGG:

id description
K20828 ZNF143_76, STAF; zinc finger protein 143/76

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013900 True 3707 mRNA 0.55 13 46199714 46207783

Neighbor

gene id symbol gene type direction distance location
AMCG00013899 NA coding upstream 1817 46179141 ~ 46197897 (+)
AMCG00013893 NA coding upstream 22833 46165651 ~ 46176881 (+)
AMCG00013897 rpl10a,LOC105016832,LOC103141192 coding upstream 36215 46160628 ~ 46163499 (+)
AMCG00013896 NA coding upstream 39298 46156424 ~ 46160416 (+)
AMCG00013892 NA coding upstream 44107 46150583 ~ 46155607 (+)
AMCG00013901 NA coding downstream 7953 46215736 ~ 46217211 (+)
AMCG00013902 NA coding downstream 52195 46259978 ~ 46270819 (+)
AMCG00013904 NA coding downstream 186026 46393809 ~ 46404685 (+)
AMCG00013909 fam72a,zgc:101564,LOC107656018,LOC108425783,LOC107548849,LOC107675824,LOC107590148,LOC105017400 coding downstream 345248 46553031 ~ 46557951 (+)
AMCG00013913 NA coding downstream 536198 46743981 ~ 46752657 (+)
G47390 NA non-coding upstream 277816 45921140 ~ 45921898 (+)
G47387 NA non-coding upstream 293315 45906102 ~ 45906399 (+)
G47383 NA non-coding upstream 296529 45901867 ~ 45903185 (+)
G47322 NA non-coding upstream 344945 45851095 ~ 45854769 (+)
G47336 NA non-coding upstream 373062 45826312 ~ 45826652 (+)
G47546 NA non-coding downstream 88850 46296633 ~ 46302869 (+)
G47580 NA non-coding downstream 211349 46419132 ~ 46470471 (+)
G47669 NA non-coding downstream 722684 46930467 ~ 46934777 (+)
G47681 NA non-coding downstream 761955 46969738 ~ 46971538 (+)
G47684 NA non-coding downstream 767733 46975516 ~ 46976186 (+)
AMCG00013879 dennd2d other upstream 240520 45943571 ~ 45959194 (+)
G47398 NA other upstream 257808 45934659 ~ 45941906 (+)
AMCG00013872 NA other upstream 376486 45816372 ~ 45823228 (+)
G47206 NA other upstream 838832 45326658 ~ 45360882 (+)
AMCG00013838 si:ch211-240g9.1,LOC107598959,LOC107653411,LOC108264952,LOC108438565,LOC102786421,LOC100700110 other upstream 1104045 45034772 ~ 45095669 (+)
AMCG00013919 LOC102792503,LOC106583503,LOC106565096 other downstream 829312 47037095 ~ 47073708 (+)
AMCG00013927 LOC108435245,LOC102295207,LOC101474852,LOC101474572,LOC102198786 other downstream 1012136 47219919 ~ 47227969 (+)
AMCG00013943 NA other downstream 1544431 47752214 ~ 47819723 (+)
AMCG00013961 NA other downstream 2031917 48239700 ~ 48258433 (+)
G48018 NA other downstream 2060971 48268754 ~ 48269272 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000186_00304422_00316712 ZNF76 coding CI01000186 null 304318 ~ 316863 (-)