G47322


Basic Information

Item Value
gene id G47322
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 45851095 ~ 45854769 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU58997
ATGTGCTCCTCCGCACTCAAGGTGCAGAGACACGATCACGAGAAAAACGAGGATCTGCAGGATGTGAACATGGCATCTTACTGAGTCTTTATCTACTGAACTGCTGAACGGAGAAGAccttttgtaaatgtgtgtgtatatatataatgtgtgtgtgtgtatatatatatatatatatatatatatattttttttttttaagaagaaaaaagtcacGAATAGTATTTCATAttctatatacattttgtaaagaaaacagccttttttctgtctgtgaaaactttctaaatggaaaaatctcatctgaatatgtatatattttttgttttcttgtggcCCGTGGATAGTTGTGACTTCCCTGTCGAACTCAAAGGCTCGATCGGTTCCCTGTGAACTtgaggaaggaaaagaaaaactacaagataggaaatgtaaaatgaagcGATGAGATCTGTGAACAGATCTGCAGAAACCGAGTCGCTTTTTATAAAACCGATTCATCTTCTCAGCTGTTGAGATGGAtgtttgtttagattttcaCAAGGTGGGGGTGGAGTGATGGATGGAAGAGGCCAATcagaaaaaacagaatgagttttgtttacttttctcaCCAAAAAGTACCATCACACATCACAGCAGGATCAAAGAAACGATCGAGGACAGGAAAAGGAAGCGTCCTGGTCAGAGAGGGTCCTGTGAGATCTTGGCTTAGAGTTTGATCCCTGAAGCACCTGTATgatcgtattattattattattattattattattattattattattattttttttttttttaaaggtgcagAATTTACTAAAACTCGGCCTGGGCGTCTGGGGTTTGAAACAGGTCTGCCATGGGCCGTCACCCCCATGTGTGTCACGGCAGGGGACGGGGTGGGAGGGGTCTCTCTGAGTGACAGCCCTTTAAAACCCCTGAGGTGATATTGTACACATTCTCTGATGCTTTAAAAGCCAATGTGTCCCGTCTGCAGTTTGATCTGCGCTGTGACGTTTCAGAGGGGGTCCtactgaataaatatatacacactcgCACGGACACATATGTACGTAtctatgggtgtgtgtatatgtatatgtacatattagtgtttgtgtgtctttagaTATTGTTGAAATAGTTGTGAATGCAGCAGCACATgcctgtatatgtatatacatatacagaacattttttttgtattttttttatgatactgtgcaaatgtgtgtgtgtgtgtgtatatataatacatgttgatcagattattatttttgtctccGCGTAGTAGGAGCTTTACCAGCAACACAAAACACTTCTCTGATGATGGGATTTCAGTCTTGAAGGTCCTGATCTTTTAGAAATCCCTGGAGTGATTATTTATGCCCCTACCATTAACTGTAGATCCATTGTGATTGGCTCTGCCATTATAGTCAGAATCGGGATTCCTAGCAAGGAACTCTGGAAAGACTTTCTCTTTTGGTCCCTATCCATGTGTGGCTCCTGTAGCTGGCTTTCACTAcgctgtttttgtttatttgtttaagttttttttgcTCAACATCCTCCACTGAAGACCTGGGGGTTCACACGCACTGCTGTGTCTTTCTTGCTTGTAAACTCACCATGCCAAAACCAGCAGAATTAGGTTTCTCATTCCAGCCCCGTGTTGTCTGGTTTCCTAGTGTCGGAGCAGTGGATGCCTTCTGTGAGCAGTTTATCACGGGTGTCAGATCGTGGGGtatatcattgttttaaaatctgaaacaaaatggCCTCCTGTCATCATGTCTGAAGGCAGTCACTTACTTTCACCCTGCCTTTCCAAAGGGCCAAAAacgtgtttttttatgtaaatctatataaaaacaaaaaatagatattttcaaatgaagaaaaaaaagttgcatCAGTCTCCTCTATAACAAGTTCAAGGGaaagatgcattaaaaaaaggttttttttttttataaccacTTCACAACAATAACCCAGTTTCAGATGTGAGgggaaaacataattaaaaataaagcagttggTGTATTGCTATTGCTATACAACGCTATTGCTTTTTGATTCCCTTGACTAGAAACACAATTGTTTGCATTGAAACTGCAGATTGATTCCACACAGTTGGAATGAATGGGTAATTTTCATCCTCCATTCAATAGACTATACAGTACATAtgaatttgcttttttattattatttatttaatgttttctgtataaGGTATCAAACCTTCAGAATATGTTTGTTGAGTTATTTACCTGCTACAAACCCTTTGTCTTCATATTTGACTAAACTACTCCCGACCACAAAAATCCAAAATGACAAAAGTTTTGTGAAAACGTCGCATTTCTCTTGCCATTCACACACCAGGAGGCAGCTGGCCTGGGAAAGTGTACAATTTGGCTTCTACCCATCGCAGCAGATCTGCACTGTATGGCACAGGTCCTATATTCTGAAATCTAGACCTGAATTGAAGAGCATAGTCTGTCCGTCGTGCTCTTGTCCGGTGAAGAAACCCCTTGATCCTCAcctttcagaaaaaataagaatccCTTAGATGTCTAGAAAATGACTGAGGGGAAAATGATTTGCATTGAATTCCTTCTGTCCTTTGCCTGTAAAATGCGTAATGCACTGGTAAATCCACAAGACACTGTATATGAAGTATAAATGGCAATTAATGAGCCAGGACAGGGTACAAGTGTGCCCTTCTCTCTAGTGCAACACTTTAATACATGCTGACAGAGCCAGCACTGAAGTGGAAATGTATTTGGTATATCGCCCCCCCCCAGCAGCACTAACTTGTGAATTACTGTGAAAAGTCTGCTTTGAAAACTCCttgatgtatatttgtgttttatgtttaggTTATAAAATCTCAAGAGTCAGTCACCCCTCACAGAAGGGAaggcatatatttttttgaaaatttctttataaaaaataaaatcaaacctgCGCTTGGGGGTGTAGGGTATCGGGCCATGGTGGTGTTGTGTATTGTAGAGTTAATTacatgttatttgtgttttccagaatcttttaatgtagattttttttttttttgtaagaagaAATTGAACTAtctatattgtttgtttcttttttgggggggaaaagtTTCTAGATGACAAAACTATGAAAAGAATAAAACCAATACATTcttatactgtgtgtgtatatatatatatagatatatatatatatatatatcctctgCCCTAAACTGTACTGTCCATTAGTGCTTAATCAGGTTGA
>TU58998
ATGTGCTCCTCCGCACTCAAGGTGCAGAGACACGATCACGAGAAAAACGAGGATCTGCAGGATGTGAACATGGCATCTTACTGAGTCTTTATCTACTGAACTGCTGAACGGAGAAGAccttttgtaaatgtgtgtgtatatatataatgtgtgtgtgtgtatatatatatatatatatatatatatattttttttttttaagaagaaaaaagtcacGAATAGTATTTCATAttctatatacattttgtaaagaaaacagccttttttctgtctgtgaaaactttctaaatggaaaaatctcatctgaatatgtatatattttttgttttcttgtggcCCGTGGATAGTTGTGACTTCCCTGTCGAACTCAAAGGCTCGATCGGTTCCCTGTGAACTtgaggaaggaaaagaaaaactacaagataggaaatgtaaaatgaagcGATGAGATCTGTGAACAGATCTGCAGAAACCGAGTCGCTTTTTATAAAACCGATTCATCTTCTCAGCTGTTGAGATGGAtgtttgtttagattttcaCAAGGTGGGGGTGGAGTGATGGATGGAAGAGGCCAATcagaaaaaacagaatgagttttgtttacttttctcaCCAAAAAGTACCATCACACATCACAGCAGGATCAAAGAAACGATCGAGGACAGGAAAAGGAAGCGTCCTGGTCAGAGAGGGTCCTGTGAGATCTTGGCTTAGAGTTTGATCCCTGAAGCACCTGTATgatcgtattattattattattttttttttttttttaaaggtgcagAATTTACTAAAACTCGGCCTGGGCGTCTGGGGTTTGAAACAGGTCTGCCATGGGCCGTCACCCCCATGTGTGTCACGGCAGGGGACGGGGTGGGAGGGGTCTCTCTGAGTGACAGCCCTTTAAAACCCCTGAGGTGATATTGTACACATTCTCTGATGCTTTAAAAGCCAATGTGTCCCGTCTGCAGTTTGATCTGCGCTGTGACGTTTCAGAGGGGGTCCtactgaataaatatatacacactcgCACGGACACATATGTACGTAtctatgggtgtgtgtatatgtatatgtacatattagtgtttgtgtgtctttagaTATTGTTGAAATAGTTGTGAATGCAGCAGCACATgcctgtatatgtatatacatatacagaacattttttttgtattttttttatgatactgtgcaaatgtgtgtgtgtgtgtgtatatataatacatgttgatcagattattatttttgtctccGCGTAGTAGGAGCTTTACCAGCAACACAAAACACTTCTCTGATGATGGGATTTCAGTCTTGAAGGTCCTGATCTTTTAGAAATCCCTGGAGTGATTATTTATGCCCCTACCATTAACTGTAGATCCATTGTGATTGGCTCTGCCATTATAGTCAGAATCGGGATTCCTAGCAAGGAACTCTGGAAAGACTTTCTCTTTTGGTCCCTATCCATGTGTGGCTCCTGTAGCTGGCTTTCACTAcgctgtttttgtttatttgtttaagttttttttgcTCAACATCCTCCACTGAAGACCTGGGGGTTCACACGCACTGCTGTGTCTTTCTTGCTTGTAAACTCACCATGCCAAAACCAGCAGAATTAGGTTTCTCATTCCAGCCCCGTGTTGTCTGGTTTCCTAGTGTCGGAGCAGTGGATGCCTTCTGTGAGCAGTTTATCACGGGTGTCAGATCGTGGGGtatatcattgttttaaaatctgaaacaaaatggCCTCCTGTCATCATGTCTGAAGGCAGTCACTTACTTTCACCCTGCCTTTCCAAAGGGCCAAAAacgtgtttttttatgtaaatctatataaaaacaaaaaatagatattttcaaatgaagaaaaaaaagttgcatCAGTCTCCTCTATAACAAGTTCAAGGGaaagatgcattaaaaaaaggttttttttttttataaccacTTCACAACAATAACCCAGTTTCAGATGTGAGgggaaaacataattaaaaataaagcagttggTGTATTGCTATTGCTATACAACGCTATTGCTTTTTGATTCCCTTGACTAGAAACACAATTGTTTGCATTGAAACTGCAGATTGATTCCACACAGTTGGAATGAATGGGTAATTTTCATCCTCCATTCAATAGACTATACAGTACATAtgaatttgcttttttattattatttatttaatgttttctgtataaGGTATCAAACCTTCAGAATATGTTTGTTGAGTTATTTACCTGCTACAAACCCTTTGTCTTCATATTTGACTAAACTACTCCCGACCACAAAAATCCAAAATGACAAAAGTTTTGTGAAAACGTCGCATTTCTCTTGCCATTCACACACCAGGAGGCAGCTGGCCTGGGAAAGTGTACAATTTGGCTTCTACCCATCGCAGCAGATCTGCACTGTATGGCACAGGTCCTATATTCTGAAATCTAGACCTGAATTGAAGAGCATAGTCTGTCCGTCGTGCTCTTGTCCGGTGAAGAAACCCCTTGATCCTCAcctttcagaaaaaataagaatccCTTAGATGTCTAGAAAATGACTGAGGGGAAAATGATTTGCATTGAATTCCTTCTGTCCTTTGCCTGTAAAATGCGTAATGCACTGGTAAATCCACAAGACACTGTATATGAAGTATAAATGGCAATTAATGAGCCAGGACAGGGTACAAGTGTGCCCTTCTCTCTAGTGCAACACTTTAATACATGCTGACAGAGCCAGCACTGAAGTGGAAATGTATTTGGTATATCGCCCCCCCCCAGCAGCACTAACTTGTGAATTACTGTGAAAAGTCTGCTTTGAAAACTCCttgatgtatatttgtgttttatgtttaggTTATAAAATCTCAAGAGTCAGTCACCCCTCACAGAAGGGAaggcatatatttttttgaaaatttctttataaaaaataaaatcaaacctgCGCTTGGGGGTGTAGGGTATCGGGCCATGGTGGTGTTGTGTATTGTAGAGTTAATTacatgttatttgtgttttccagaatcttttaatgtagattttttttttttttgtaagaagaAATTGAACTAtctatattgtttgtttcttttttgggggggaaaagtTTCTAGATGACAAAACTATGAAAAGAATAAAACCAATACATTcttatactgtgtgtgtatatatatatatagatatatatatatatatatatcctctgCCCTAAACTGTACTGTCCATTAGTGCTTAATCAGGTTGA
>TU58999
ATGTGCTCCTCCGCACTCAAGGTGCAGAGACACGATCACGAGGTCAGTCTGCCCTCTCACAGAAAAACGAGGATCTGCAGGATGTGAACATGGCATCTTACTGAGTCTTTATCTACTGAACTGCTGAACGGAGAAGAccttttgtaaatgtgtgtgtatatatataatgtgtgtgtgtgtatatatatatatatatatatatatatattttttttttttaagaagaaaaaagtcacGAATAGTATTTCATAttctatatacattttgtaaagaaaacagccttttttctgtctgtgaaaactttctaaatggaaaaatctcatctgaatatgtatatattttttgttttcttgtggcCCGTGGATAGTTGTGACTTCCCTGTCGAACTCAAAGGCTCGATCGGTTCCCTGTGAACTtgaggaaggaaaagaaaaactacaagataggaaatgtaaaatgaagcGATGAGATCTGTGAACAGATCTGCAGAAACCGAGTCGCTTTTTATAAAACCGATTCATCTTCTCAGCTGTTGAGATGGAtgtttgtttagattttcaCAAGGTGGGGGTGGAGTGATGGATGGAAGAGGCCAATcagaaaaaacagaatgagttttgtttacttttctcaCCAAAAAGTACCATCACACATCACAGCAGGATCAAAGAAACGATCGAGGACAGGAAAAGGAAGCGTCCTGGTCAGAGAGGGTCCTGTGAGATCTTGGCTTAGAGTTTGATCCCTGAAGCACCTGTATgatcgtattattattattattattattatttttttaaaggtgcagAATTTACTAAAACTCGGCCTGGGCGTCTGGGGTTTGAAACAGGTCTGCCATGGGCCGTCACCCCCATGTGTGTCACGGCAGGGGACGGGGTGGGAGGGGTCTCTCTGAGTGACAGCCCTTTAAAACCCCTGAGGTGATATTGTACACATTCTCTGATGCTTTAAAAGCCAATGTGTCCCGTCTGCAGTTTGATCTGCGCTGTGACGTTTCAGAGGGGGTCCtactgaataaatatatacacactcgCACGGACACATATGTACGTAtctatgggtgtgtgtatatgtatatgtacatattagtgtttgtgtgtctttagaTATTGTTGAAATAGTTGTGAATGCAGCAGCACATgcctgtatatgtatatacatatacagaacattttttttgtattttttttatgatactgtgcaaatgtgtgtgtgtgtgtgtatatataatacatgttgatcagattattatttttgtctccGCGTAGTAGGAGCTTTACCAGCAACACAAAACACTTCTCTGATGATGGGATTTCAGTCTTGAAGGTCCTGATCTTTTAGAAATCCCTGGAGTGATTATTTATGCCCCTACCATTAACTGTAGATCCATTGTGATTGGCTCTGCCATTATAGTCAGAATCGGGATTCCTAGCAAGGAACTCTGGAAAGACTTTCTCTTTTGGTCCCTATCCATGTGTGGCTCCTGTAGCTGGCTTTCACTAcgctgtttttgtttatttgtttaagttttttttgcTCAACATCCTCCACTGAAGACCTGGGGGTTCACACGCACTGCTGTGTCTTTCTTGCTTGTAAACTCACCATGCCAAAACCAGCAGAATTAGGTTTCTCATTCCAGCCCCGTGTTGTCTGGTTTCCTAGTGTCGGAGCAGTGGATGCCTTCTGTGAGCAGTTTATCACGGGTGTCAGATCGTGGGGtatatcattgttttaaaatctgaaacaaaatggCCTCCTGTCATCATGTCTGAAGGCAGTCACTTACTTTCACCCTGCCTTTCCAAAGGGCCAAAAacgtgtttttttatgtaaatctatataaaaacaaaaaatagatattttcaaatgaagaaaaaaaagttgcatCAGTCTCCTCTATAACAAGTTCAAGGGaaagatgcattaaaaaaaggttttttttttttataaccacTTCACAACAATAACCCAGTTTCAGATGTGAGgggaaaacataattaaaaataaagcagttggTGTATTGCTATTGCTATACAACGCTATTGCTTTTTGATTCCCTTGACTAGAAACACAATTGTTTGCATTGAAACTGCAGATTGATTCCACACAGTTGGAATGAATGGGTAATTTTCATCCTCCATTCAATAGACTATACAGTACATAtgaatttgcttttttattattatttatttaatgttttctgtataaGGTATCAAACCTTCAGAATATGTTTGTTGAGTTATTTACCTGCTACAAACCCTTTGTCTTCATATTTGACTAAACTACTCCCGACCACAAAAATCCAAAATGACAAAAGTTTTGTGAAAACGTCGCATTTCTCTTGCCATTCACACACCAGGAGGCAGCTGGCCTGGGAAAGTGTACAATTTGGCTTCTACCCATCGCAGCAGATCTGCACTGTATGGCACAGGTCCTATATTCTGAAATCTAGACCTGAATTGAAGAGCATAGTCTGTCCGTCGTGCTCTTGTCCGGTGAAGAAACCCCTTGATCCTCAcctttcagaaaaaataagaatccCTTAGATGTCTAGAAAATGACTGAGGGGAAAATGATTTGCATTGAATTCCTTCTGTCCTTTGCCTGTAAAATGCGTAATGCACTGGTAAATCCACAAGACACTGTATATGAAGTATAAATGGCAATTAATGAGCCAGGACAGGGTACAAGTGTGCCCTTCTCTCTAGTGCAACACTTTAATACATGCTGACAGAGCCAGCACTGAAGTGGAAATGTATTTGGTATATCGCCCCCCCCCAGCAGCACTAACTTGTGAATTACTGTGAAAAGTCTGCTTTGAAAACTCCttgatgtatatttgtgttttatgtttaggTTATAAAATCTCAAGAGTCAGTCACCCCTCACAGAAGGGAaggcatatatttttttgaaaatttctttataaaaaataaaatcaaacctgCGCTTGGGGGTGTAGGGTATCGGGCCATGGTGGTGTTGTGTATTGTAGAGTTAATTacatgttatttgtgttttccagaatcttttaatgtagattttttttttttttgtaagaagaAATTGAACTAtctatattgtttgtttcttttttgggggggaaaagtTTCTAGATGACAAAACTATGAAAAGAATAAAACCAATACATTcttatactgtgtgtgtatatatatatatagatatatatatatatatatatcctctgCCCTAAACTGTACTGTCCATTAGTGCTTAATCAGGTTGA

Function

GO:

id name namespace
GO:0005248 voltage-gated sodium channel activity molecular_function
GO:0005272 sodium channel activity molecular_function

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU58997 True 3273 lncRNA 0.38 2 45851095 45854769
TU58998 False 3248 lncRNA 0.38 3 45851095 45854769
TU58999 False 3268 lncRNA 0.38 3 45851095 45854769

Neighbor

gene id symbol gene type direction distance location
AMCG00013871 LOC103358259 coding upstream 4959 45833821 ~ 45846136 (+)
AMCG00013869 NA coding upstream 48284 45800918 ~ 45802811 (+)
AMCG00013873 NA coding upstream 52154 45793535 ~ 45798941 (+)
AMCG00013863 NA coding upstream 110553 45720220 ~ 45740542 (+)
AMCG00013862 NA coding upstream 156067 45682080 ~ 45695028 (+)
AMCG00013870 NA coding downstream 683 45855452 ~ 45876895 (+)
AMCG00013868 NA coding downstream 23329 45878098 ~ 45885313 (+)
AMCG00013878 NA coding downstream 34526 45889295 ~ 45893895 (+)
AMCG00013881 NA coding downstream 40378 45895147 ~ 45901581 (+)
AMCG00013880 NA coding downstream 121459 45976228 ~ 45978644 (+)
G47336 NA non-coding upstream 24443 45826312 ~ 45826652 (+)
G47320 NA non-coding upstream 50672 45782026 ~ 45800423 (+)
G47264 irf6 non-coding upstream 209458 45639864 ~ 45641637 (+)
G47262 NA non-coding upstream 226524 45624372 ~ 45624571 (+)
G47258 NA non-coding upstream 228289 45622587 ~ 45622806 (+)
G47383 NA non-coding downstream 47098 45901867 ~ 45903185 (+)
G47387 NA non-coding downstream 51333 45906102 ~ 45906399 (+)
G47390 NA non-coding downstream 66371 45921140 ~ 45921898 (+)
G47546 NA non-coding downstream 441864 46296633 ~ 46302869 (+)
G47580 NA non-coding downstream 564363 46419132 ~ 46470471 (+)
AMCG00013872 NA other upstream 27867 45816372 ~ 45823228 (+)
G47206 NA other upstream 490213 45326658 ~ 45360882 (+)
AMCG00013838 si:ch211-240g9.1,LOC107598959,LOC107653411,LOC108264952,LOC108438565,LOC102786421,LOC100700110 other upstream 755426 45034772 ~ 45095669 (+)
G46945 NA other upstream 2410397 43438492 ~ 43440698 (+)
G46862 NA other upstream 2761452 43087289 ~ 43089643 (+)
G47398 NA other downstream 79890 45934659 ~ 45941906 (+)
AMCG00013879 dennd2d other downstream 88802 45943571 ~ 45959194 (+)
AMCG00013919 LOC102792503,LOC106583503,LOC106565096 other downstream 1182326 47037095 ~ 47073708 (+)
AMCG00013927 LOC108435245,LOC102295207,LOC101474852,LOC101474572,LOC102198786 other downstream 1365150 47219919 ~ 47227969 (+)
AMCG00013943 NA other downstream 1897445 47752214 ~ 47819723 (+)

Expression


Co-expression Network