AMCG00013863


Basic Information

Item Value
gene id AMCG00013863
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 45720220 ~ 45740542 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013863
GCACAGGTGAGGCTTAGCTTAAATACAGGCAGGAGGAGTGGCAGAGCACCATACCCGAGACTCACTACACACAGAGCACAACCACTGCCATCTCCAAACACTGCGCAACGTAACACACCAGGAGCTGGTGgtgcaaaagaaaagaaactcaAGATGTGGACTCTACTCCCGTTAGTAGtGCTGGTGGCCCTTTCTGTGGCCCAGGAAGACTGCAATCGAGGCGCCTGTTACCCGCCCACCGGAGACCTGCTTATCGGCCGAGCCAGTCAACTAGAAGCCTCTTCCACCTGCGGCATGACCGGCCCCGAGGTCTTCTGTAGCCCCCTGGGACAGTGGAAGATGAAGTGCTGCCCATGTGACTCCAGGGACCCTTCTTCCCAAAACGCCCATCGCATCCAGAACGTGCTCTCCCAGGCCGGGCCCGACAGGTGGTGGCAGTCCACGAAAGATGTGAATCCCGTCACCGTGCAGTTTGACCTTGATAGCACGTTCCAGCTCAGCGAGTTGGTCCTGGAGTTCAAGggacCCAGACCGAGCGCCTTGGTGATTGAGCGCTCCACAGATTTTGGCGTGACCTGGCAGCCCTATATGTACAGGGCGTGTGACTGCAGCTCCTCCTTCCCGTCCATCAGCACCTCTTCCCCCCGCACACTGCATGACACCCAGTGTACCAAAATGGCCCCTGTGCCCACCAACAACTTCTACCAGGATCATACGGTGCAATTTAGTCCTCTGCTTCAGCTGGCTGACGTCAATGTGCCACAGAGCCAGAAGATTGAGAgTATGGCAGACTTCACCAACTTGCGTGTGAACCTGACCAAATTGGGCCGGGCACCCCCTCTGAGCAATGCCCGTGCATCCAGCGCTCTGTACGCCCTGAAGGAGATGCGGGTACAGGGCACCTGTTTCTGCCACGGCCACGCCAACCGATGCCTGCCCAGCGCCACGCAGCCGTCCAGTGTACAGGTGAACAGCGTCTGCGATTGCCAGCACAACACAGCGGGGGTGAACTGCGAGCGCTGCGCCGACCTCTACAACGACCTGCCCTGGAGACCCGCCGAGGAGTTCAACACGCACCAGTGCAAGAGGTGCGAGTGCAATAACCATTCCCAGCGCTGCCGGTTTGATCCAGCGGTGTTTGAGGCCAGTGGTAGGGTGAGCGGTGGGGTGTGCGAGGACTGTCAGCACCATACGACCGGCCCCAAATGTGACAAGTGCGCCGCCTTTTACTACCGCAACCCTCGGAGCAGCATGAACCGACAGGACGCCTGCCTGCGGTGCCAGTGTGTGAACGACGGCAACGGGCAGGGAAGGATGTGCGATCCGGAGACGGGGGTCTGCCTCTGCAAGGCCAACGTGGAGGGACCCCGCTGTGATCGCTGCAAACAGGGATACTATGGCTTGAGCCCCTCGGACCCCATGGGATGCAAGAAATGCCCCTGCAGTGCGGTGGGCTCCAGCAGAGGTGCGACTTGTGATGCAGTGACCGGCCAGTGCCAGTGTCTGCCTCACTTCGTGGGCCAGACGTGTGAACGCTGTGCCGCCGGCTACTGGAACCCCTTGTCTGGCCAGGGCTGCGAGCGCTGCAACTGTGACCCCCGCAATTCCTACAGCTCCTCCTGCGACCAGTTAACAGGTCAGTGTCAGTGCCGGACAGGATATGGGGGACGGACCTGCACAGAATGCCCGGACAACACCTACGGAGACGTTCGCAGAGGCTGCAAGCCGTGTAACTGTGAGCAGGCGGGCACCATGAGGCCCGGCTGTGACAAGACCACGGGCGCTTGTCTGTGCCTGCTGGGCATGACTGGGCCTCGGTGCGACCGGTGCCAGCGAGGGCACTGCGATAACTACCCCAGATGCGTGCTCTGTCCCTCCTGCTTCTTCTCCTTGGACAACGATCTCAAAGGCTTCTCCAGCACCCTGGCCCGTCTCTCCTCCCAGGTCACAAACCTGCCAGGCTCCTCTGGGCAGGACTTGGGCCCCAGGATCGTTGGGCTGGAGGCCATCCTCCGACAGATCAGGGACCAGCTGCCCTACCCAAACCCCATTGACAGAGAGATCACTGACAGCATCACAACACTGAACAGACTGAAggCTGAGGCTGGCCGTTTGAACCCTGACCTCTTCCCTACGGATCAGAGCCGGGCTCTGGACCGACAGATTGATGACCTGAGGGCCTCGCTGCTTCTCCTCACCCAGCAGTACAACATCAAGAGGGAACAGGTCACCAAAACTGTGACCACAGACCCTAGTGGAGCCTACTCTACCATCACCACAGCCTACAAGGAGTCCACAGACGCGATGAAGAGCGTGGAGGGCAGCCAAGGGGTGGTGGACCAGTCCGCCAAGTTGCGGGGCGATGCCATCGACCTGGAGGGGCAGGTGCAGCCGGGCAACACAAGAGCTCTGGAGGACCTCAACAACCAGCTCCGCACACAGCCCAACCTCACTCCCACCGCCCgcaagGTGTGTGGCAGCACCCGGACCGCCCCCTGCACCCCCAAGGAGTGTGGTGGGCAATTGTGCCCTGGCCCAGATGCGCCCCCTTGTGACGGCAGGAGGACCTGCACTGGAGCTCTGCCTCTCGGGAAGAAGGCCCTGGCTGACAGCGAGGAGGCCCGGTCCAGACTGAGGGAGCTCACCTCGAGAATCCAGCAGGCAGCGGCAGAGATCCAGGACACGCAGGATTCGGCCAATCAGGCGAGACTCTCTACAGACCAGCTGGCCAATCGGATCAAACAAGCCAGAACTGACATGGACGCAGACATGCAGGACACACGGAACTTTGTCAGGCAGCTGAGGGACTTCCTGACTGACCCCACCACCGACCCTGCCACCATCCAGAGAGTGAGTGAAGAAGTCCTGGACACCCAGCTGCCCCAGAGCATGGACGCCCTGCGCAGGAAGTTGGACGAAATCAGGCGTATTGCTGCAACCCTGCCTGACAGCACCGATGTCTTGAGCAAGACTGGCCCAGAGCTGGATCGTGCCCGAAAGCTGCTATTGGAGGCAGAGAAGGCCCGGGACAAGGCCAATCAGATGAATGAGAACGTGGAGGGGCTGCTGGACAACCTGGGCAGCGTGGAGAGCTCGCTGGGCGAAGTGGAGAAGAAGATCCGCAGCAGCACTGACATCGTGAAGCAAGTGCAGGACAACATTGCAAACGATCTGGTGAAGAAGAACGCCGGCCTGGCCACACAGGCGGACACAGATGCCGATCTGGCCCAAACTGAGGCTGATCAGGCTGCATGGgacCTGAAGGACCTGGAGAAGCAGTACAGCGTGCTACAGCAGAAGGCATCAGAAAGTTCGAGCAGAGGGGAGTCGGGCCCCATGGACGACAAACTGCGGCAGCTCCAGGGGCAGGCTGGGGTCCTGATCCAGGACAGCATGGACATGATCAATAGACTCTCAGGCAAAGAAGGTGCTCTCCTGCAAGCCAACGAGGAGCTGATCCAGAAGTCCCAAAGTCTGCTCAACCTGGACACAAAAATGGAAGGCATCCTGGCAGACATCCGCGAGAAGCAACGGCGCCTTAGCATCTGCCAGGGATAATTGCAGCCCAACCCCGTTCAGGGAACTGTCCGGCACCTCCCAGCCCATCTGTTGACTGTTCAGCACGATGCACAGCTTCACCTGTCGCTGAcaacatcattatttattctattttcaattgaaaaataaaacactatcaGTTAGTAGCTCTCCTTTAGGCAACCGACTAACAAACACATTGGAGCAGTTCAGTGTTGAGAGAGATTATATCTTACAGTATCTATAGACCTACAGACGATCCCCACCGTTCTCTCCAGCAACCTTAAAATAATCTCCTCCATCACTCCTGCACATTGTTTTCTCTGCAGGTTTGTTGGGAAGCTATCGCCCCCTGGTGGCAATTAACTCCCTCACACTGTTGACAGCAACTGTACTCTTCTCAAGCACTCAAGTACATTAACTGGCCTCTGGTCTGTGCTGAAACCAAGCAGGAAATAGCGATGCCTGCAAACCTCTGGTTTGTCTTTTCTcaataaaagca

Function

GO: NA

KEGG:

id description
K06244 LAMB3; laminin, beta 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013863 True 4039 mRNA 0.58 23 45720220 45740542

Neighbor

gene id symbol gene type direction distance location
AMCG00013862 NA coding upstream 25192 45682080 ~ 45695028 (+)
AMCG00013852 guca1b,LOC107562461,LOC107657012 coding upstream 63848 45653353 ~ 45656372 (+)
AMCG00013855 NA coding upstream 83651 45635112 ~ 45636569 (+)
AMCG00013853 NA coding upstream 86744 45628387 ~ 45633476 (+)
AMCG00013854 gstm3,LOC106946564,LOC103151067,LOC106525860,LOC105931784,LOC103467185 coding upstream 118028 45598723 ~ 45602192 (+)
AMCG00013873 NA coding downstream 52993 45793535 ~ 45798941 (+)
AMCG00013869 NA coding downstream 60376 45800918 ~ 45802811 (+)
AMCG00013871 LOC103358259 coding downstream 93279 45833821 ~ 45846136 (+)
AMCG00013870 NA coding downstream 114910 45855452 ~ 45876895 (+)
AMCG00013868 NA coding downstream 137556 45878098 ~ 45885313 (+)
G47264 irf6 non-coding upstream 78583 45639864 ~ 45641637 (+)
G47262 NA non-coding upstream 95649 45624372 ~ 45624571 (+)
G47258 NA non-coding upstream 97414 45622587 ~ 45622806 (+)
G47255 atp5f1,LOC107679218,LOC107731279,LOC107711984 non-coding upstream 99988 45616133 ~ 45620232 (+)
G47232 NA non-coding upstream 145907 45569409 ~ 45574313 (+)
G47320 NA non-coding downstream 41484 45782026 ~ 45800423 (+)
G47336 NA non-coding downstream 85770 45826312 ~ 45826652 (+)
G47322 NA non-coding downstream 110553 45851095 ~ 45854769 (+)
G47383 NA non-coding downstream 161325 45901867 ~ 45903185 (+)
G47387 NA non-coding downstream 165560 45906102 ~ 45906399 (+)
G47206 NA other upstream 359338 45326658 ~ 45360882 (+)
AMCG00013838 si:ch211-240g9.1,LOC107598959,LOC107653411,LOC108264952,LOC108438565,LOC102786421,LOC100700110 other upstream 624551 45034772 ~ 45095669 (+)
G46945 NA other upstream 2279522 43438492 ~ 43440698 (+)
G46862 NA other upstream 2630577 43087289 ~ 43089643 (+)
G46840 LOC107711852,LOC107679810,LOC107594520,LOC108425079,LOC108265838 other upstream 2675784 43039984 ~ 43044436 (+)
AMCG00013872 NA other downstream 75830 45816372 ~ 45823228 (+)
G47398 NA other downstream 194117 45934659 ~ 45941906 (+)
AMCG00013879 dennd2d other downstream 203029 45943571 ~ 45959194 (+)
AMCG00013919 LOC102792503,LOC106583503,LOC106565096 other downstream 1296553 47037095 ~ 47073708 (+)
AMCG00013927 LOC108435245,LOC102295207,LOC101474852,LOC101474572,LOC102198786 other downstream 1479377 47219919 ~ 47227969 (+)

Expression


Co-expression Network