AMCG00013899


Basic Information

Item Value
gene id AMCG00013899
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 46179141 ~ 46197897 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013899
CGGAGGGAGACGCGCTGCTCGGACTGCCCGTGGGCCGCGGCGCAGGCGCAGTGAGGCCGCAGTGCTCTCGCCAGCTCTCCCCTCCCCTTACTTTATTAGTCTTTCCTCCCcgccctcccctctctcctctctctctcttttcagtcTCTCAGGCTGGTTGAGAGCACACACACCCTCAAgacagcagctgctgcagccgAGCACTGAGCCGCAGAGTCACTACGGTCGCACACGAGTCGAGCATCCTTTGAGTTTCCCTCCCCTGCCTGGGACGAGAGGACCCAGGGACATGCTCTGGGCAGTCACTCTTCAGAGACCTGCAgtcgtgtgagagagagagagagagagagagagagaAGCCAGAGCTTGATCTTCTCGGGGTCAGTGTGGCAGCTGCGTCGACATGACGCCCCACGAGACTTCGAACCGGTCCCATGAGCTCTTCGACCGCTTCCTTCAGGGGCAGAGATGCAAGGACGTGCTACTCAACTTCAGCCAGCTCTGCCAGCACCTGGAGGTTGACCCCAGTGACTATCGCAACTTCTACGTCAAACTGAAGGAACGGCTGAACTACTGGAGGGCCAAGGCGCTGTGGGCCAAGCTAGACAAGCGGGCGTCGCACCAGGACTACCAGCAGGGTCATGCCTGTGCCAAGAACAAGtgtttagTGCTGGGGGCGGGACCATGTGGCCTGCGCACGGCTATCGAGCTGGCCTTCATGGGTGCCAAGGTGGTCCTGATCGAGAAACGGGACACCTTCTCCCGGAACAATGTACTGCACCTCTGGCCCTACACCATCCACGACCTGAGGGGCCTGGCAGCCAAGAAGTTCTACGGCAAGTTCTGCTCCGGTTCCCTGGACCACATCAGTATCCGTCAGCTGCAGCTGATCCTGCTGAAGGTGGCTCTGATCTTGGGGGTAGAGGTGCACACTTGTGTGGAGTACAAGGGCCTCATTGAGCCCCAGCGCGGGGCCACAGGATGGCATGCAGATATATGCCCAGAGTCCCACCCAGCTGCGCAGTTCCAGTTCGATGTCTTCATCTCTGCTGGAGGAGGGCGCTTTGTCCCTGAAgGGTTTAAGAGGAAGGAGCTGCGGGGGAAGCTGGCGATCGGCATCACCGCCAACTTCGTCAACCACCACACCGCAGCCGAGGGCCAGGTCTCCGAGATCAGTGGCGTGGCACGCATCTACAACCAGAAGTTCTTTCAGAGCCTCCTCAACGAGACAGgcaTCGATCTGGAAAACATTGTCTATTACAAAGACGACACTCACTATTTCGTCATGACAGCCAAGaagaagagccttctgaccaaGGGAGTCATTAAGCAGGACGACAGCGTCGCGGAGAAGCTGCTCTCCCCCGCAAACGTGAACGCCGAGGCCCTGCGCCGGTATGCCTACGAGGCCGCCCACTTCTCCACCAACAAGCAGCTGCCCGGCCTGGAGTTTGCGCTCAACCATGCCAGCCAGCCGGACGTCGCCATGTTCGACTTCACCTGCATGTACCGCGCCGAGACCGCCTCGCTGGTGAGGGAGAGGCACGGGCACCGGCTTCTGGTGGGCCTGGTGGGAGACTGTCTGGTGGAGcccTTCTGGCCTCTGGGCACAGGCATTGCCCGGGGGTTCCTGGCTGCTTTTGATGCTGCCTGGATGGTCCGGCGCTGGGGCCAGGGAACCCCACCTCTGGAAGTCATGGCAGAACGGGAGAGCATCTACCAGTTACTATCTCAGACCACCCCGGAAAATACCAGCAAGAACTATAATGCTTACAGCATCGATCCTACCACGCGCTACCCCAACATCAACCTCCACTCCATAAAGCCCAAACAGGTGCAGCACTTGTACGACGTGGGGGATCAGCGAGACGGACGCCGACCCAGCAAGAAACCGAAGGAGAAGCTGCCGCACCTACGGCAAGACTCCATCGGTGGGTGTGAGGAGCTCCTGGCCTGGTGCCAACAGCACACAGCCGGGTACAAGCGGGTGAAGGTGACAGACCTGACTCACTCCTGGAAGTCTGGGCTGGCGCTGTGTGCCCTTATTCACCGTTTCAAACCACACCTCATtgactttacttcGCTGGACGAGACAAACACGGCCTACAACAACCAGCTGGCCTTTGACATGGCCGAGCGAGAGCTGGGCATAACGCCCATCATGTCAGGCAGCGACTTGGCGGCCCAGTCGCAGCCTGACAAGCTGGCCATGGTGCTGTACCTCACCCAGTTCTACAATGCCTTCCAGGAAACAGCGCCCCCTCCAGATCCCGACCACCTCCTCTCGTCATCCAAGCCCGTCTCCCTCTCCACCACCAAGTCTGCCAtcttcttcctgagcaaactcaAACATAACTCTCTGCAGAGGCGCAAGGAAAAAATGTCTGCTGAAAAAGATGCCAAAGAGAGATGCAAGATGTCGGAGACAGAAGTCAGCCCCACTAAAGATATGCCCCTGTCCCCGGGCAGTCCCGGTAGCCCCTGCAGCAGTGATCTGTGTTATTTCTGTGGTAACCGGGTCTACGTGTTGGAGCGGttttttgttcccACAGGCCAGTTCTTCTGCATGCAGCACTCTGAGGAATGTCCTTCTGAGAGTGGAAAGCAATCTCCAATCAGCCAGGACTTTACAAATCTCATTGTGCCAGTCTTACAGACTGTGGAAAAGAGCAACGGAGGACACGGTCCACTCCAGCCCCCCTCTCACGTTCCCACTAAGGTTGAAGAAACTTCAGATCAGCCTAGCCTCCCGGAAAATGTTGACCATTCAATTTCTAGCCGCACGGACGAAACTGTTCAGGAGTCGTCATGCAAAGATAGTGAAGGTACACCCCGAGGTGAAGACCATGTAGTGCTCCCACCCCTGCCTACAGCACGAACCGATGACATCCTGGAAACAACTGAGAGGGAAGCTACTGTACCTGACTGTGTCACCACCGTGATCGGTTCTTCAGATGAACAACAGGAGGACAGTGGCACCAGACAACCCCCTGCCCCCGCTGTACGGACTTCACTCCTCAAACCAGGGCCTGGGGGGCCTGGATGTCCACCGGTACCCAAACCTCGCATCATCACCCCAAAGACACCAGCTGTGTCCTTTCCCAATGAAAACGAGAGCCAGAGCACCAAGAGGCAAGACGATCACACCCCACCTGAGGATGACCAAGGCGGCCAGATGTCCTTGACTGGAGAGGATCAATCCCTGCCACAGGCCAGCCCAGAGTCTCATGTCGACGAGGGGCCCCCGAAGCCCACCATGAAGAAGCTGCAACTGACCGAAGAAGAGAAGAGCCAGCTGATCAGTCTCAATTTAGTCTCCGATGCGGATGCTGAAAGTCAGCACCCGGGAGAACCTCCATCCGGGGATCAGGCCAAGGGTCCTCCCACTCTCCTCATCCCAAGCGGGTGTGAAGAACAGCTGGGCATTTGGACCGGGCCCAGGGGCAGTGTCAGAGAGCAGACCAACCGGAGATCTTTTAGGAGGAAAGAGGTGCAACCTGAGCAGCCCACTGCGCAACCGCCTGCGCAGCTCCAGCTGCACCCCAACCACAAGCCCAAGCCCAAATTCTCCCCTTGGAACCTGTCATCGCCTCGACTGGGGAGGGAGCACAGAGACCGGGGTGCTCCGGCTTTAGACACCCAGGAACCTGAGTTTGGTTTGTCTGAAGGtgaagatgaggaggaggaagacgacGATGAAGATGTCTTCAATCTAGACGAGGAGGATTTTCTGTTCAATGAGAAGTTCCAGGCCATCCCTGATGACCCAGTCGAAGCCCAGAAGCTGGAGTTGATGAAGATGAGGACCCTGGAGCGCCGCGTCAAGCTGTGCGAGATGCAGAGGTTCCACAAGGCCCAGTCCATACAGCGCCGTCTGGAGGAGATCGAGGTGACGTTCAAAGACCTTGAGGAGAAGGGAGTTATTCTGGAGAGGGCGCTGCGTGGGGAGAGCGGCTCTGGTGGATCTCCAGAGATGATAGACCAGTGGATTCAGCTGGTGCAGGAGAAGAACGCTCTGGTCTCGGAGGAGTCGGACCTCATGGTGGCGTCTCGACAACTGGAGCTGGAGGACAAACAGACCATGCTGGAGAAGGAGTTCAGACGCTACATAGAAATGGACGactCTAAGAAGACGGCCCAGGACCGGGCGGAGGAGGAAAGGGTGCTGGCGGAAATGGTGGAGGTGGTGGATATGAGGAACTCGCTGGTCACCTTCCTAGAGGAGAAGAGGCTAAAGGAAATCAATGAGTGTCTGCATGGCCTGGCTGTGCTGGATCCCAAGAGACCCCATTCAGGAGGGGCCCAGGTCCACTGGGAATGACGGCCATAGACGAGACACGACTCGTATGACTGAGTGGATTGCACATTagtcctacacacacacacacacaggcactcgCTATAGGGAGGGAACCAGTTAGGTTCTGCGTTCCACCTTGGAGAGACGGAGAAAAAAGGATTCAACGCTGAGCACATGAATGGGATATGGATTTGGGCCCAATCGGCAGACACAGACCTCTCACCTGACTTGTTGGCTCAAACAGAGCTGCGGAAACTCTCTACTGCGTGGGACCGGATCTTTCTCTGTACCTCAATAAAGAACGCTTGTTTAATTAGTCAGAAATCAAGATATTTCAGGGAGGCACCACCTTAGACAAGATTGAGTGGGCTTCAACCTCTACTGAGAACTTCTAACAGCTGTCCTGAATTGTCACGGAACAGGGTGGACTTGTCTGCTTCAGCTACAATCTGTTACTACCTGTTAAACATTTCTGAGTCTTTGCCATTTCTGCTTTGGTCTAAAtgacactgtaaatatatataagtatttacTCAGGTACACATAACCTTTTCATTGTTCCTTTTTggttcttaaatgtattttttgtagaaATGCCCCTGTATGCTGCACTTGATCGAAATAGTCATGAAAAACTGCTTGTGTTCATTATCAAAATACTTACATCATACTTAAATAATATGTGCAGGTATAGGGGGGGAACTTACTGTTCCAGTGCAATACAATGCGAACCAAAGAGTGTCAGCCTACCAAAGACGTATGTGGTATTAAGTCTTTTCCGTTAATTAAAAGCTTTAAGCACTGGtgtcacagacccagattagcacgaGTCTGTGACTAGCCAATGCTATTTTGCATAGGGTAGTGCAAaccaaggtctgtgaaaccagctgttaCTGTGTATGTATAATGCCACGCCATTGAGTGCATAATTGCAGTCACAGATGAATGGGGTGTAAAGTTTTCTGTGGCCCttgcaaaaatatatgcaaattgtGCAACTTGACtcttatacataaataaacaatgaaaaacattgtatttaaaatgtgccaCGTCATCACAAGCATCTTTACTACCTGAATATATCTGTTTAAAATCTCCTAGTTTTCCCCAGTGCACTTTACGAAAGCCCAGAGGAACTGCTTGTCTGCTTATTTCAGttgaaagacattttatttttgtatgtttgtgaaTTGTAAGTAGCCTGTATGTTGCTGCTCATATGCTCACACAGAACGTCTGTAAATATgagttgtttttataataaatatttctaaCTTATGAGAAAAGGGGCCAATACGTTTCAGAGCAGATTTATCACTGTGTAATCAGCTTTTCTGCATCAATAATGGACACGTTTCCTGTGTCGAAAGTTAACCATAATCTAAGCCTAACGTTATCAGTTCTACACCTACCAACTAGTCAAGCCTAAATAGGGGAATGCAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013899 True 5750 mRNA 0.53 25 46179141 46197897

Neighbor

gene id symbol gene type direction distance location
AMCG00013893 NA coding upstream 2260 46165651 ~ 46176881 (+)
AMCG00013897 rpl10a,LOC105016832,LOC103141192 coding upstream 15642 46160628 ~ 46163499 (+)
AMCG00013896 NA coding upstream 18725 46156424 ~ 46160416 (+)
AMCG00013892 NA coding upstream 23534 46150583 ~ 46155607 (+)
AMCG00013894 ppard,LOC100136526,LOC107549971 coding upstream 34537 46133626 ~ 46144604 (+)
AMCG00013900 NA coding downstream 1817 46199714 ~ 46207783 (+)
AMCG00013901 NA coding downstream 17839 46215736 ~ 46217211 (+)
AMCG00013902 NA coding downstream 62081 46259978 ~ 46270819 (+)
AMCG00013904 NA coding downstream 195912 46393809 ~ 46404685 (+)
AMCG00013909 fam72a,zgc:101564,LOC107656018,LOC108425783,LOC107548849,LOC107675824,LOC107590148,LOC105017400 coding downstream 355134 46553031 ~ 46557951 (+)
G47390 NA non-coding upstream 257243 45921140 ~ 45921898 (+)
G47387 NA non-coding upstream 272742 45906102 ~ 45906399 (+)
G47383 NA non-coding upstream 275956 45901867 ~ 45903185 (+)
G47322 NA non-coding upstream 324372 45851095 ~ 45854769 (+)
G47336 NA non-coding upstream 352489 45826312 ~ 45826652 (+)
G47546 NA non-coding downstream 98736 46296633 ~ 46302869 (+)
G47580 NA non-coding downstream 221235 46419132 ~ 46470471 (+)
G47669 NA non-coding downstream 732570 46930467 ~ 46934777 (+)
G47681 NA non-coding downstream 771841 46969738 ~ 46971538 (+)
G47684 NA non-coding downstream 777619 46975516 ~ 46976186 (+)
AMCG00013879 dennd2d other upstream 219947 45943571 ~ 45959194 (+)
G47398 NA other upstream 237235 45934659 ~ 45941906 (+)
AMCG00013872 NA other upstream 355913 45816372 ~ 45823228 (+)
G47206 NA other upstream 818259 45326658 ~ 45360882 (+)
AMCG00013838 si:ch211-240g9.1,LOC107598959,LOC107653411,LOC108264952,LOC108438565,LOC102786421,LOC100700110 other upstream 1083472 45034772 ~ 45095669 (+)
AMCG00013919 LOC102792503,LOC106583503,LOC106565096 other downstream 839198 47037095 ~ 47073708 (+)
AMCG00013927 LOC108435245,LOC102295207,LOC101474852,LOC101474572,LOC102198786 other downstream 1022022 47219919 ~ 47227969 (+)
AMCG00013943 NA other downstream 1554317 47752214 ~ 47819723 (+)
AMCG00013961 NA other downstream 2041803 48239700 ~ 48258433 (+)
G48018 NA other downstream 2070857 48268754 ~ 48269272 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location