RNA id: AMCG00013899


Basic Information

Item Value
RNA id AMCG00013899
length 5750
RNA type mRNA
GC content 0.53
exon number 25
gene id AMCG00013899
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 46179141 ~ 46197897 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGAGGGAGACGCGCTGCTCGGACTGCCCGTGGGCCGCGGCGCAGGCGCAGTGAGGCCGCAGTGCTCTCGCCAGCTCTCCCCTCCCCTTACTTTATTAGTCTTTCCTCCCcgccctcccctctctcctctctctctcttttcagtcTCTCAGGCTGGTTGAGAGCACACACACCCTCAAgacagcagctgctgcagccgAGCACTGAGCCGCAGAGTCACTACGGTCGCACACGAGTCGAGCATCCTTTGAGTTTCCCTCCCCTGCCTGGGACGAGAGGACCCAGGGACATGCTCTGGGCAGTCACTCTTCAGAGACCTGCAgtcgtgtgagagagagagagagagagagagagagaAGCCAGAGCTTGATCTTCTCGGGGTCAGTGTGGCAGCTGCGTCGACATGACGCCCCACGAGACTTCGAACCGGTCCCATGAGCTCTTCGACCGCTTCCTTCAGGGGCAGAGATGCAAGGACGTGCTACTCAACTTCAGCCAGCTCTGCCAGCACCTGGAGGTTGACCCCAGTGACTATCGCAACTTCTACGTCAAACTGAAGGAACGGCTGAACTACTGGAGGGCCAAGGCGCTGTGGGCCAAGCTAGACAAGCGGGCGTCGCACCAGGACTACCAGCAGGGTCATGCCTGTGCCAAGAACAAGtgtttagTGCTGGGGGCGGGACCATGTGGCCTGCGCACGGCTATCGAGCTGGCCTTCATGGGTGCCAAGGTGGTCCTGATCGAGAAACGGGACACCTTCTCCCGGAACAATGTACTGCACCTCTGGCCCTACACCATCCACGACCTGAGGGGCCTGGCAGCCAAGAAGTTCTACGGCAAGTTCTGCTCCGGTTCCCTGGACCACATCAGTATCCGTCAGCTGCAGCTGATCCTGCTGAAGGTGGCTCTGATCTTGGGGGTAGAGGTGCACACTTGTGTGGAGTACAAGGGCCTCATTGAGCCCCAGCGCGGGGCCACAGGATGGCATGCAGATATATGCCCAGAGTCCCACCCAGCTGCGCAGTTCCAGTTCGATGTCTTCATCTCTGCTGGAGGAGGGCGCTTTGTCCCTGAAgGGTTTAAGAGGAAGGAGCTGCGGGGGAAGCTGGCGATCGGCATCACCGCCAACTTCGTCAACCACCACACCGCAGCCGAGGGCCAGGTCTCCGAGATCAGTGGCGTGGCACGCATCTACAACCAGAAGTTCTTTCAGAGCCTCCTCAACGAGACAGgcaTCGATCTGGAAAACATTGTCTATTACAAAGACGACACTCACTATTTCGTCATGACAGCCAAGaagaagagccttctgaccaaGGGAGTCATTAAGCAGGACGACAGCGTCGCGGAGAAGCTGCTCTCCCCCGCAAACGTGAACGCCGAGGCCCTGCGCCGGTATGCCTACGAGGCCGCCCACTTCTCCACCAACAAGCAGCTGCCCGGCCTGGAGTTTGCGCTCAACCATGCCAGCCAGCCGGACGTCGCCATGTTCGACTTCACCTGCATGTACCGCGCCGAGACCGCCTCGCTGGTGAGGGAGAGGCACGGGCACCGGCTTCTGGTGGGCCTGGTGGGAGACTGTCTGGTGGAGcccTTCTGGCCTCTGGGCACAGGCATTGCCCGGGGGTTCCTGGCTGCTTTTGATGCTGCCTGGATGGTCCGGCGCTGGGGCCAGGGAACCCCACCTCTGGAAGTCATGGCAGAACGGGAGAGCATCTACCAGTTACTATCTCAGACCACCCCGGAAAATACCAGCAAGAACTATAATGCTTACAGCATCGATCCTACCACGCGCTACCCCAACATCAACCTCCACTCCATAAAGCCCAAACAGGTGCAGCACTTGTACGACGTGGGGGATCAGCGAGACGGACGCCGACCCAGCAAGAAACCGAAGGAGAAGCTGCCGCACCTACGGCAAGACTCCATCGGTGGGTGTGAGGAGCTCCTGGCCTGGTGCCAACAGCACACAGCCGGGTACAAGCGGGTGAAGGTGACAGACCTGACTCACTCCTGGAAGTCTGGGCTGGCGCTGTGTGCCCTTATTCACCGTTTCAAACCACACCTCATtgactttacttcGCTGGACGAGACAAACACGGCCTACAACAACCAGCTGGCCTTTGACATGGCCGAGCGAGAGCTGGGCATAACGCCCATCATGTCAGGCAGCGACTTGGCGGCCCAGTCGCAGCCTGACAAGCTGGCCATGGTGCTGTACCTCACCCAGTTCTACAATGCCTTCCAGGAAACAGCGCCCCCTCCAGATCCCGACCACCTCCTCTCGTCATCCAAGCCCGTCTCCCTCTCCACCACCAAGTCTGCCAtcttcttcctgagcaaactcaAACATAACTCTCTGCAGAGGCGCAAGGAAAAAATGTCTGCTGAAAAAGATGCCAAAGAGAGATGCAAGATGTCGGAGACAGAAGTCAGCCCCACTAAAGATATGCCCCTGTCCCCGGGCAGTCCCGGTAGCCCCTGCAGCAGTGATCTGTGTTATTTCTGTGGTAACCGGGTCTACGTGTTGGAGCGGttttttgttcccACAGGCCAGTTCTTCTGCATGCAGCACTCTGAGGAATGTCCTTCTGAGAGTGGAAAGCAATCTCCAATCAGCCAGGACTTTACAAATCTCATTGTGCCAGTCTTACAGACTGTGGAAAAGAGCAACGGAGGACACGGTCCACTCCAGCCCCCCTCTCACGTTCCCACTAAGGTTGAAGAAACTTCAGATCAGCCTAGCCTCCCGGAAAATGTTGACCATTCAATTTCTAGCCGCACGGACGAAACTGTTCAGGAGTCGTCATGCAAAGATAGTGAAGGTACACCCCGAGGTGAAGACCATGTAGTGCTCCCACCCCTGCCTACAGCACGAACCGATGACATCCTGGAAACAACTGAGAGGGAAGCTACTGTACCTGACTGTGTCACCACCGTGATCGGTTCTTCAGATGAACAACAGGAGGACAGTGGCACCAGACAACCCCCTGCCCCCGCTGTACGGACTTCACTCCTCAAACCAGGGCCTGGGGGGCCTGGATGTCCACCGGTACCCAAACCTCGCATCATCACCCCAAAGACACCAGCTGTGTCCTTTCCCAATGAAAACGAGAGCCAGAGCACCAAGAGGCAAGACGATCACACCCCACCTGAGGATGACCAAGGCGGCCAGATGTCCTTGACTGGAGAGGATCAATCCCTGCCACAGGCCAGCCCAGAGTCTCATGTCGACGAGGGGCCCCCGAAGCCCACCATGAAGAAGCTGCAACTGACCGAAGAAGAGAAGAGCCAGCTGATCAGTCTCAATTTAGTCTCCGATGCGGATGCTGAAAGTCAGCACCCGGGAGAACCTCCATCCGGGGATCAGGCCAAGGGTCCTCCCACTCTCCTCATCCCAAGCGGGTGTGAAGAACAGCTGGGCATTTGGACCGGGCCCAGGGGCAGTGTCAGAGAGCAGACCAACCGGAGATCTTTTAGGAGGAAAGAGGTGCAACCTGAGCAGCCCACTGCGCAACCGCCTGCGCAGCTCCAGCTGCACCCCAACCACAAGCCCAAGCCCAAATTCTCCCCTTGGAACCTGTCATCGCCTCGACTGGGGAGGGAGCACAGAGACCGGGGTGCTCCGGCTTTAGACACCCAGGAACCTGAGTTTGGTTTGTCTGAAGGtgaagatgaggaggaggaagacgacGATGAAGATGTCTTCAATCTAGACGAGGAGGATTTTCTGTTCAATGAGAAGTTCCAGGCCATCCCTGATGACCCAGTCGAAGCCCAGAAGCTGGAGTTGATGAAGATGAGGACCCTGGAGCGCCGCGTCAAGCTGTGCGAGATGCAGAGGTTCCACAAGGCCCAGTCCATACAGCGCCGTCTGGAGGAGATCGAGGTGACGTTCAAAGACCTTGAGGAGAAGGGAGTTATTCTGGAGAGGGCGCTGCGTGGGGAGAGCGGCTCTGGTGGATCTCCAGAGATGATAGACCAGTGGATTCAGCTGGTGCAGGAGAAGAACGCTCTGGTCTCGGAGGAGTCGGACCTCATGGTGGCGTCTCGACAACTGGAGCTGGAGGACAAACAGACCATGCTGGAGAAGGAGTTCAGACGCTACATAGAAATGGACGactCTAAGAAGACGGCCCAGGACCGGGCGGAGGAGGAAAGGGTGCTGGCGGAAATGGTGGAGGTGGTGGATATGAGGAACTCGCTGGTCACCTTCCTAGAGGAGAAGAGGCTAAAGGAAATCAATGAGTGTCTGCATGGCCTGGCTGTGCTGGATCCCAAGAGACCCCATTCAGGAGGGGCCCAGGTCCACTGGGAATGACGGCCATAGACGAGACACGACTCGTATGACTGAGTGGATTGCACATTagtcctacacacacacacacacaggcactcgCTATAGGGAGGGAACCAGTTAGGTTCTGCGTTCCACCTTGGAGAGACGGAGAAAAAAGGATTCAACGCTGAGCACATGAATGGGATATGGATTTGGGCCCAATCGGCAGACACAGACCTCTCACCTGACTTGTTGGCTCAAACAGAGCTGCGGAAACTCTCTACTGCGTGGGACCGGATCTTTCTCTGTACCTCAATAAAGAACGCTTGTTTAATTAGTCAGAAATCAAGATATTTCAGGGAGGCACCACCTTAGACAAGATTGAGTGGGCTTCAACCTCTACTGAGAACTTCTAACAGCTGTCCTGAATTGTCACGGAACAGGGTGGACTTGTCTGCTTCAGCTACAATCTGTTACTACCTGTTAAACATTTCTGAGTCTTTGCCATTTCTGCTTTGGTCTAAAtgacactgtaaatatatataagtatttacTCAGGTACACATAACCTTTTCATTGTTCCTTTTTggttcttaaatgtattttttgtagaaATGCCCCTGTATGCTGCACTTGATCGAAATAGTCATGAAAAACTGCTTGTGTTCATTATCAAAATACTTACATCATACTTAAATAATATGTGCAGGTATAGGGGGGGAACTTACTGTTCCAGTGCAATACAATGCGAACCAAAGAGTGTCAGCCTACCAAAGACGTATGTGGTATTAAGTCTTTTCCGTTAATTAAAAGCTTTAAGCACTGGtgtcacagacccagattagcacgaGTCTGTGACTAGCCAATGCTATTTTGCATAGGGTAGTGCAAaccaaggtctgtgaaaccagctgttaCTGTGTATGTATAATGCCACGCCATTGAGTGCATAATTGCAGTCACAGATGAATGGGGTGTAAAGTTTTCTGTGGCCCttgcaaaaatatatgcaaattgtGCAACTTGACtcttatacataaataaacaatgaaaaacattgtatttaaaatgtgccaCGTCATCACAAGCATCTTTACTACCTGAATATATCTGTTTAAAATCTCCTAGTTTTCCCCAGTGCACTTTACGAAAGCCCAGAGGAACTGCTTGTCTGCTTATTTCAGttgaaagacattttatttttgtatgtttgtgaaTTGTAAGTAGCCTGTATGTTGCTGCTCATATGCTCACACAGAACGTCTGTAAATATgagttgtttttataataaatatttctaaCTTATGAGAAAAGGGGCCAATACGTTTCAGAGCAGATTTATCACTGTGTAATCAGCTTTTCTGCATCAATAATGGACACGTTTCCTGTGTCGAAAGTTAACCATAATCTAAGCCTAACGTTATCAGTTCTACACCTACCAACTAGTCAAGCCTAAATAGGGGAATGCAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59104 lncRNA upstream 231285 45943571 ~ 45947856 (+) False AMCG00013879
TU59094 lncRNA upstream 257243 45921140 ~ 45921898 (+) True G47390
TU59091 lncRNA upstream 272742 45906102 ~ 45906399 (+) True G47387
TU59087 lncRNA upstream 275956 45901867 ~ 45903185 (+) True G47383
TU58999 lncRNA upstream 324372 45851095 ~ 45854769 (+) False G47322
TU59322 lncRNA downstream 98736 46296633 ~ 46302869 (+) True G47546
TU59362 lncRNA downstream 221235 46419132 ~ 46470471 (+) True G47580
TU59479 lncRNA downstream 732570 46930467 ~ 46934777 (+) True G47669
TU59491 lncRNA downstream 771841 46969738 ~ 46971538 (+) True G47681
TU59494 lncRNA downstream 777619 46975516 ~ 46976186 (+) True G47684
AMCG00013893 mRNA upstream 2260 46165651 ~ 46176881 (+) True AMCG00013893
AMCG00013897 mRNA upstream 15642 46160628 ~ 46163499 (+) True AMCG00013897
AMCG00013896 mRNA upstream 18725 46156424 ~ 46160416 (+) True AMCG00013896
AMCG00013892 mRNA upstream 23534 46150583 ~ 46155607 (+) True AMCG00013892
AMCG00013894 mRNA upstream 34537 46133626 ~ 46144604 (+) True AMCG00013894
AMCG00013900 mRNA downstream 1817 46199714 ~ 46207783 (+) True AMCG00013900
AMCG00013901 mRNA downstream 17839 46215736 ~ 46217211 (+) True AMCG00013901
AMCG00013902 mRNA downstream 62081 46259978 ~ 46270819 (+) True AMCG00013902
AMCG00013904 mRNA downstream 195912 46393809 ~ 46404685 (+) True AMCG00013904
AMCG00013909 mRNA downstream 355134 46553031 ~ 46557951 (+) True AMCG00013909
TU59106 other upstream 237235 45934659 ~ 45941906 (+) True G47398
TU59011 other upstream 361186 45816372 ~ 45817955 (+) False AMCG00013872
TU58857 other upstream 818259 45326658 ~ 45360882 (+) True G47206
TU58815 other upstream 1083472 45034772 ~ 45095669 (+) True AMCG00013838
TU58527 other upstream 2738443 43438492 ~ 43440698 (+) True G46945
TU59522 other downstream 871804 47069701 ~ 47073708 (+) False AMCG00013919
TU59915 other downstream 2050170 48248067 ~ 48249713 (+) False AMCG00013961
TU59923 other downstream 2056397 48254294 ~ 48255821 (+) False AMCG00013961
TU59933 other downstream 2070857 48268754 ~ 48269272 (+) True G48018
TU59942 other downstream 2083166 48281063 ~ 48351285 (+) True G48026

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00055367 False 5885 mRNA 0.50 29 NC_007115.7 9724236 ~ 9764767 (-)